RNA–Protein interactions for RNA: ENST00000565453.1

CDH3-204, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-204ENST00000565453 PTPRTO14522 1441 aa24.61■■□□□ 1.53
CDH3-204ENST00000565453 CAMSAP1Q5T5Y3 1602 aa24.58■■□□□ 1.53
CDH3-204ENST00000565453 PTPN23Q9H3S7 1636 aa24.58■■□□□ 1.53
CDH3-204ENST00000565453 CEP170BQ9Y4F5 1589 aaPredicted RBP24.58■■□□□ 1.52
CDH3-204ENST00000565453 RNF17Q9BXT8 1623 aaKnown RBP24.57■■□□□ 1.52
CDH3-204ENST00000565453 CERKQ8TCT0 537 aa24.56■■□□□ 1.52
CDH3-204ENST00000565453 PZPP20742 1482 aa24.56■■□□□ 1.52
CDH3-204ENST00000565453 ABCC5O15440 1437 aa24.55■■□□□ 1.52
CDH3-204ENST00000565453 FGD6Q6ZV73 1430 aa24.55■■□□□ 1.52
CDH3-204ENST00000565453 EIF2AK4Q9P2K8 1649 aaKnown RBP24.55■■□□□ 1.52
CDH3-204ENST00000565453 TCOF1Q13428 1488 aaKnown RBP24.55■■□□□ 1.52
CDH3-204ENST00000565453 SHANK2Q9UPX8 1470 aa24.54■■□□□ 1.52
CDH3-204ENST00000565453 CROCC2H7BZ55 1655 aa24.53■■□□□ 1.52
CDH3-204ENST00000565453 WASHC2CQ9Y4E1 1318 aa24.53■■□□□ 1.52
CDH3-204ENST00000565453 PLA2R1Q13018 1463 aa24.52■■□□□ 1.52
CDH3-204ENST00000565453 DUOX2Q9NRD8 1548 aa24.51■■□□□ 1.51
CDH3-204ENST00000565453 MROH1Q8NDA8 1641 aa24.51■■□□□ 1.51
CDH3-204ENST00000565453 FBXO31Q5XUX0 539 aaPredicted RBP24.51■■□□□ 1.51
CDH3-204ENST00000565453 A2ML1A8K2U0 1454 aa24.51■■□□□ 1.51
CDH3-204ENST00000565453 DAPK1P53355 1430 aa24.5■■□□□ 1.51
CDH3-204ENST00000565453 ABCC3O15438 1527 aa24.5■■□□□ 1.51
CDH3-204ENST00000565453 DNMT1P26358 1616 aaKnown RBP24.5■■□□□ 1.51
CDH3-204ENST00000565453 TNRQ92752 1358 aa24.49■■□□□ 1.51
CDH3-204ENST00000565453 ZC3H13Q5T200 1668 aaKnown RBP24.47■■□□□ 1.51
CDH3-204ENST00000565453 NCKAP5LQ9HCH0 1330 aa24.47■■□□□ 1.51
CDH3-204ENST00000565453 KIF15Q9NS87 1388 aa24.46■■□□□ 1.51
CDH3-204ENST00000565453 LTBP4Q8N2S1 1624 aa24.46■■□□□ 1.51
CDH3-204ENST00000565453 PKD2Q13563 968 aa24.45■■□□□ 1.5
CDH3-204ENST00000565453 ERBINQ96RT1 1412 aa24.43■■□□□ 1.5
CDH3-204ENST00000565453 RRP7BPQ9NSQ0 103 aa24.41■■□□□ 1.5
CDH3-204ENST00000565453 SPATA31D1Q6ZQQ2 1576 aa24.41■■□□□ 1.5
CDH3-204ENST00000565453 PRDM15P57071 1507 aaPredicted RBP24.4■■□□□ 1.5
CDH3-204ENST00000565453 CEP152O94986 1710 aa24.4■■□□□ 1.5
CDH3-204ENST00000565453 NLRP1Q9C000 1473 aa24.39■■□□□ 1.5
CDH3-204ENST00000565453 ERVK-7P63135 1459 aa24.37■■□□□ 1.49
CDH3-204ENST00000565453 DEPDC5O75140 1603 aa24.36■■□□□ 1.49
CDH3-204ENST00000565453 ANKRD30AQ9BXX3 1397 aa24.35■■□□□ 1.49
CDH3-204ENST00000565453 NEURL4Q96JN8 1562 aa24.34■■□□□ 1.49
CDH3-204ENST00000565453 ADGRL2O95490 1459 aa24.34■■□□□ 1.49
CDH3-204ENST00000565453 CHIC2Q9UKJ5 165 aa24.34■■□□□ 1.49
CDH3-204ENST00000565453 UGGT1Q9NYU2 1555 aa24.33■■□□□ 1.49
CDH3-204ENST00000565453 POLR1AO95602 1720 aaPredicted RBP24.32■■□□□ 1.48
CDH3-204ENST00000565453 IQSEC2Q5JU85 1478 aa24.32■■□□□ 1.48
CDH3-204ENST00000565453 ARHGAP31Q2M1Z3 1444 aa24.32■■□□□ 1.48
CDH3-204ENST00000565453 ZNF335Q9H4Z2 1342 aaPredicted RBP24.32■■□□□ 1.48
CDH3-204ENST00000565453 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.3■■□□□ 1.48
CDH3-204ENST00000565453 THEMISQ8N1K5 641 aaPredicted RBP24.3■■□□□ 1.48
CDH3-204ENST00000565453 VWDEQ8N2E2 1590 aa24.29■■□□□ 1.48
CDH3-204ENST00000565453 FAM50AQ14320 339 aaKnown RBP24.29■■□□□ 1.48
CDH3-204ENST00000565453 LMTK2Q8IWU2 1503 aa24.27■■□□□ 1.48
CDH3-204ENST00000565453 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.26■■□□□ 1.47
CDH3-204ENST00000565453 ANKLE2Q86XL3 938 aa24.25■■□□□ 1.47
CDH3-204ENST00000565453 MED14O60244 1454 aa24.25■■□□□ 1.47
CDH3-204ENST00000565453 KANK1Q14678 1352 aa24.24■■□□□ 1.47
CDH3-204ENST00000565453 CFAP65Q6ZU64 1925 aaKnown RBP24.23■■□□□ 1.47
CDH3-204ENST00000565453 UBR1Q8IWV7 1749 aa24.22■■□□□ 1.47
CDH3-204ENST00000565453 NPHP4O75161 1426 aaPredicted RBP24.2■■□□□ 1.46
CDH3-204ENST00000565453 ANKRD50Q9ULJ7 1429 aa24.19■■□□□ 1.46
CDH3-204ENST00000565453 EFCAB6Q5THR3 1501 aa24.17■■□□□ 1.46
CDH3-204ENST00000565453 IQGAP1P46940 1657 aa24.16■■□□□ 1.46
CDH3-204ENST00000565453 ARHGAP23Q9P227 1491 aa24.16■■□□□ 1.46
CDH3-204ENST00000565453 SLIT1O75093 1534 aa24.15■■□□□ 1.46
CDH3-204ENST00000565453 PIK3C2BO00750 1634 aa24.14■■□□□ 1.46
CDH3-204ENST00000565453 CPS1P31327 1500 aa24.14■■□□□ 1.45
CDH3-204ENST00000565453 SYNMO15061 1565 aa24.13■■□□□ 1.45
CDH3-204ENST00000565453 NOS1P29475 1434 aa24.13■■□□□ 1.45
CDH3-204ENST00000565453 ROCK1Q13464 1354 aa24.13■■□□□ 1.45
CDH3-204ENST00000565453 PPARGC1BQ86YN6 1023 aaKnown RBP24.11■■□□□ 1.45
CDH3-204ENST00000565453 SCAF11Q99590 1463 aaKnown RBP24.11■■□□□ 1.45
CDH3-204ENST00000565453 UNC13BO14795 1591 aa24.1■■□□□ 1.45
CDH3-204ENST00000565453 KDM5AP29375 1690 aaKnown RBP24.09■■□□□ 1.45
CDH3-204ENST00000565453 LTKP29376 864 aa24.09■■□□□ 1.45
CDH3-204ENST00000565453 IDI1Q13907 227 aa24.08■■□□□ 1.45
CDH3-204ENST00000565453 RPRD2Q5VT52 1461 aaKnown RBP24.07■■□□□ 1.44
CDH3-204ENST00000565453 UBAP1LF5GYI3 381 aa24.07■■□□□ 1.44
CDH3-204ENST00000565453 TET3O43151 1660 aa24.07■■□□□ 1.44
CDH3-204ENST00000565453 TMEM2Q9UHN6 1383 aa24.06■■□□□ 1.44
CDH3-204ENST00000565453 TXNDC2Q86VQ3 553 aa24.05■■□□□ 1.44
CDH3-204ENST00000565453 STRCP1A6NGW2 1772 aa24.05■■□□□ 1.44
CDH3-204ENST00000565453 GCC2Q8IWJ2 1684 aa24.02■■□□□ 1.44
CDH3-204ENST00000565453 ADGRB3O60242 1522 aa24.02■■□□□ 1.44
CDH3-204ENST00000565453 ITGAEP38570 1179 aa24■■□□□ 1.43
CDH3-204ENST00000565453 SLC52A1Q9NWF4 448 aa24■■□□□ 1.43
CDH3-204ENST00000565453 STAG3Q9UJ98 1225 aa24■■□□□ 1.43
CDH3-204ENST00000565453 EID1Q9Y6B2 187 aa24■■□□□ 1.43
CDH3-204ENST00000565453 IQGAP3Q86VI3 1631 aa23.99■■□□□ 1.43
CDH3-204ENST00000565453 RRBP1Q9P2E9 1410 aaKnown RBP23.99■■□□□ 1.43
CDH3-204ENST00000565453 LRRC7Q96NW7 1537 aa23.99■■□□□ 1.43
CDH3-204ENST00000565453 E9PCH4 1651 aa23.97■■□□□ 1.43
CDH3-204ENST00000565453 ALKQ9UM73 1620 aa23.96■■□□□ 1.43
CDH3-204ENST00000565453 NUP155O75694 1391 aa23.92■■□□□ 1.42
CDH3-204ENST00000565453 TOM1O60784 492 aa23.92■■□□□ 1.42
CDH3-204ENST00000565453 TMEM131LA2VDJ0 1609 aa23.92■■□□□ 1.42
CDH3-204ENST00000565453 ZFYVE9O95405 1425 aa23.91■■□□□ 1.42
CDH3-204ENST00000565453 MYO5BQ9ULV0 1848 aa23.9■■□□□ 1.42
CDH3-204ENST00000565453 PIP4K2BP78356 416 aa23.87■■□□□ 1.41
CDH3-204ENST00000565453 RIMS2Q9UQ26 1411 aa23.85■■□□□ 1.41
CDH3-204ENST00000565453 XIRP1Q702N8 1843 aaKnown RBP23.85■■□□□ 1.41
CDH3-204ENST00000565453 DISP3Q9P2K9 1392 aa23.85■■□□□ 1.41
CDH3-204ENST00000565453 SLC26A8Q96RN1 970 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms