RNA–Protein interactions for RNA: ENST00000564387.5

USB1-209, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-209ENST00000564387 ERBINQ96RT1 1412 aa26.54■■□□□ 1.84
USB1-209ENST00000564387 CHIC2Q9UKJ5 165 aa26.53■■□□□ 1.84
USB1-209ENST00000564387 C3P01024 1663 aa26.51■■□□□ 1.83
USB1-209ENST00000564387 ESF1Q9H501 851 aaKnown RBP26.51■■□□□ 1.83
USB1-209ENST00000564387 ROCK1Q13464 1354 aa26.5■■□□□ 1.83
USB1-209ENST00000564387 ZMYM3Q14202 1370 aa26.49■■□□□ 1.83
USB1-209ENST00000564387 CLTCQ00610 1675 aaKnown RBP26.48■■□□□ 1.83
USB1-209ENST00000564387 MROH1Q8NDA8 1641 aa26.48■■□□□ 1.83
USB1-209ENST00000564387 CEBPAP49715 358 aaPredicted RBP26.48■■□□□ 1.83
USB1-209ENST00000564387 KDM5DQ9BY66 1539 aa26.45■■□□□ 1.83
USB1-209ENST00000564387 DEPDC5O75140 1603 aa26.43■■□□□ 1.82
USB1-209ENST00000564387 SETD1BQ9UPS6 1966 aaKnown RBP26.42■■□□□ 1.82
USB1-209ENST00000564387 NPATQ14207 1427 aa26.42■■□□□ 1.82
USB1-209ENST00000564387 PRDM15P57071 1507 aaPredicted RBP26.42■■□□□ 1.82
USB1-209ENST00000564387 LMTK3Q96Q04 1460 aa26.41■■□□□ 1.82
USB1-209ENST00000564387 ANKRD50Q9ULJ7 1429 aa26.4■■□□□ 1.82
USB1-209ENST00000564387 WASHC2CQ9Y4E1 1318 aa26.39■■□□□ 1.82
USB1-209ENST00000564387 ZC3H13Q5T200 1668 aaKnown RBP26.39■■□□□ 1.82
USB1-209ENST00000564387 ABCC3O15438 1527 aa26.39■■□□□ 1.81
USB1-209ENST00000564387 PLPPR3Q6T4P5 718 aa26.37■■□□□ 1.81
USB1-209ENST00000564387 PREX1Q8TCU6 1659 aa26.36■■□□□ 1.81
USB1-209ENST00000564387 VWDEQ8N2E2 1590 aa26.36■■□□□ 1.81
USB1-209ENST00000564387 PZPP20742 1482 aa26.35■■□□□ 1.81
USB1-209ENST00000564387 ITGAEP38570 1179 aa26.34■■□□□ 1.81
USB1-209ENST00000564387 LMTK2Q8IWU2 1503 aa26.31■■□□□ 1.8
USB1-209ENST00000564387 ARHGAP31Q2M1Z3 1444 aa26.3■■□□□ 1.8
USB1-209ENST00000564387 CEP152O94986 1710 aa26.29■■□□□ 1.8
USB1-209ENST00000564387 UHRF1BP1Q6BDS2 1440 aa26.29■■□□□ 1.8
USB1-209ENST00000564387 CAMSAP1Q5T5Y3 1602 aa26.28■■□□□ 1.8
USB1-209ENST00000564387 KANK1Q14678 1352 aa26.27■■□□□ 1.8
USB1-209ENST00000564387 UNC13BO14795 1591 aa26.26■■□□□ 1.79
USB1-209ENST00000564387 FBXO31Q5XUX0 539 aaPredicted RBP26.25■■□□□ 1.79
USB1-209ENST00000564387 NAIPQ13075 1403 aa26.24■■□□□ 1.79
USB1-209ENST00000564387 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.24■■□□□ 1.79
USB1-209ENST00000564387 SPATA31D1Q6ZQQ2 1576 aa26.23■■□□□ 1.79
USB1-209ENST00000564387 HFM1A2PYH4 1435 aa26.22■■□□□ 1.79
USB1-209ENST00000564387 MYO3AQ8NEV4 1616 aa26.21■■□□□ 1.79
USB1-209ENST00000564387 TNRQ92752 1358 aa26.2■■□□□ 1.79
USB1-209ENST00000564387 ZNF142P52746 1687 aaPredicted RBP26.2■■□□□ 1.78
USB1-209ENST00000564387 GCC2Q8IWJ2 1684 aa26.2■■□□□ 1.78
USB1-209ENST00000564387 ERVK-7P63135 1459 aa26.19■■□□□ 1.78
USB1-209ENST00000564387 HSPA2P54652 639 aa26.19■■□□□ 1.78
USB1-209ENST00000564387 EFCAB6Q5THR3 1501 aa26.17■■□□□ 1.78
USB1-209ENST00000564387 CEP170BQ9Y4F5 1589 aaPredicted RBP26.16■■□□□ 1.78
USB1-209ENST00000564387 IQGAP3Q86VI3 1631 aa26.15■■□□□ 1.78
USB1-209ENST00000564387 A2ML1A8K2U0 1454 aa26.15■■□□□ 1.78
USB1-209ENST00000564387 NLRP1Q9C000 1473 aa26.15■■□□□ 1.78
USB1-209ENST00000564387 TET3O43151 1660 aa26.14■■□□□ 1.78
USB1-209ENST00000564387 RPRD2Q5VT52 1461 aaKnown RBP26.13■■□□□ 1.77
USB1-209ENST00000564387 NUP155O75694 1391 aa26.1■■□□□ 1.77
USB1-209ENST00000564387 NOS1P29475 1434 aa26.1■■□□□ 1.77
USB1-209ENST00000564387 CFAP65Q6ZU64 1925 aaKnown RBP26.08■■□□□ 1.77
USB1-209ENST00000564387 STRCQ7RTU9 1775 aa26.08■■□□□ 1.77
USB1-209ENST00000564387 PLA2R1Q13018 1463 aa26.07■■□□□ 1.76
USB1-209ENST00000564387 SYNMO15061 1565 aa26.03■■□□□ 1.76
USB1-209ENST00000564387 E9PCH4 1651 aa26.03■■□□□ 1.76
USB1-209ENST00000564387 UGGT1Q9NYU2 1555 aa26.02■■□□□ 1.76
USB1-209ENST00000564387 THEMISQ8N1K5 641 aaPredicted RBP25.99■■□□□ 1.75
USB1-209ENST00000564387 UBR1Q8IWV7 1749 aa25.97■■□□□ 1.75
USB1-209ENST00000564387 KDM5AP29375 1690 aaKnown RBP25.97■■□□□ 1.75
USB1-209ENST00000564387 SLC52A1Q9NWF4 448 aa25.97■■□□□ 1.75
USB1-209ENST00000564387 PTPRTO14522 1441 aa25.97■■□□□ 1.75
USB1-209ENST00000564387 SETD5Q9C0A6 1442 aa25.97■■□□□ 1.75
USB1-209ENST00000564387 PKD2Q13563 968 aa25.96■■□□□ 1.75
USB1-209ENST00000564387 IDI1Q13907 227 aa25.96■■□□□ 1.75
USB1-209ENST00000564387 DMRT2Q9Y5R5 561 aa25.96■■□□□ 1.75
USB1-209ENST00000564387 ACIN1Q9UKV3 1341 aaKnown RBP25.95■■□□□ 1.75
USB1-209ENST00000564387 PIK3C2BO00750 1634 aa25.94■■□□□ 1.74
USB1-209ENST00000564387 ARHGAP23Q9P227 1491 aa25.91■■□□□ 1.74
USB1-209ENST00000564387 NCKAP5LQ9HCH0 1330 aa25.9■■□□□ 1.74
USB1-209ENST00000564387 SLIT1O75093 1534 aa25.9■■□□□ 1.74
USB1-209ENST00000564387 TRIM52Q96A61 297 aa25.89■■□□□ 1.74
USB1-209ENST00000564387 NEURL4Q96JN8 1562 aa25.87■■□□□ 1.73
USB1-209ENST00000564387 MED14O60244 1454 aa25.87■■□□□ 1.73
USB1-209ENST00000564387 ANKLE2Q86XL3 938 aa25.87■■□□□ 1.73
USB1-209ENST00000564387 ADGRB3O60242 1522 aa25.87■■□□□ 1.73
USB1-209ENST00000564387 POLR1AO95602 1720 aaPredicted RBP25.86■■□□□ 1.73
USB1-209ENST00000564387 RAB3GAP2Q9H2M9 1393 aa25.86■■□□□ 1.73
USB1-209ENST00000564387 HRCP23327 699 aa25.86■■□□□ 1.73
USB1-209ENST00000564387 SPHKAPQ2M3C7 1700 aa25.85■■□□□ 1.73
USB1-209ENST00000564387 TMEM2Q9UHN6 1383 aa25.84■■□□□ 1.73
USB1-209ENST00000564387 SLC4A1APQ9BWU0 796 aaKnown RBP25.84■■□□□ 1.73
USB1-209ENST00000564387 TMEM131LA2VDJ0 1609 aa25.83■■□□□ 1.73
USB1-209ENST00000564387 TRPM2O94759 1503 aa25.81■■□□□ 1.72
USB1-209ENST00000564387 MPHOSPH9Q99550 1183 aa25.8■■□□□ 1.72
USB1-209ENST00000564387 LTKP29376 864 aa25.79■■□□□ 1.72
USB1-209ENST00000564387 STAG3Q9UJ98 1225 aa25.79■■□□□ 1.72
USB1-209ENST00000564387 SCAF11Q99590 1463 aaKnown RBP25.79■■□□□ 1.72
USB1-209ENST00000564387 NPHP4O75161 1426 aaPredicted RBP25.77■■□□□ 1.72
USB1-209ENST00000564387 MYO5BQ9ULV0 1848 aa25.75■■□□□ 1.71
USB1-209ENST00000564387 ZFYVE9O95405 1425 aa25.75■■□□□ 1.71
USB1-209ENST00000564387 TXNDC2Q86VQ3 553 aa25.75■■□□□ 1.71
USB1-209ENST00000564387 CLTCL1P53675 1640 aa25.74■■□□□ 1.71
USB1-209ENST00000564387 EID1Q9Y6B2 187 aa25.73■■□□□ 1.71
USB1-209ENST00000564387 IQGAP1P46940 1657 aa25.73■■□□□ 1.71
USB1-209ENST00000564387 LTBP4Q8N2S1 1624 aa25.71■■□□□ 1.71
USB1-209ENST00000564387 FOXD1Q16676 465 aa25.68■■□□□ 1.7
USB1-209ENST00000564387 RIMS2Q9UQ26 1411 aa25.68■■□□□ 1.7
USB1-209ENST00000564387 HDGFP51858 240 aaKnown RBP25.66■■□□□ 1.7
USB1-209ENST00000564387 CHGAP10645 457 aaKnown RBP25.65■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms