RNA–Protein interactions for RNA: ENST00000564255.5

CHD9-209, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 5

Gene CHD9, Length 2,896 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-209	ENST00000564255	REPIN1	Q9BWE0	567 aa	Known RBP	4.98	□□□□□ -1.61
CHD9-209	ENST00000564255	KDM4F	A0A1W2PPD8	638 aa		4.97	□□□□□ -1.61
CHD9-209	ENST00000564255	FLII	Q13045	1269 aa		4.97	□□□□□ -1.61
CHD9-209	ENST00000564255	TTLL12	Q14166	644 aa	Predicted RBP	4.96	□□□□□ -1.62
CHD9-209	ENST00000564255	SH3D19	Q5HYK7	790 aa		4.96	□□□□□ -1.62
CHD9-209	ENST00000564255	PCMTD1	Q96MG8	357 aa	Predicted RBP	4.95	□□□□□ -1.62
CHD9-209	ENST00000564255	PCDHGA4	Q9Y5G9	962 aa		4.95	□□□□□ -1.62
CHD9-209	ENST00000564255	PCDHGA10	Q9Y5H3	936 aa		4.95	□□□□□ -1.62
CHD9-209	ENST00000564255	CLCN1	P35523	988 aa		4.95	□□□□□ -1.62
CHD9-209	ENST00000564255	TYW1B	Q6NUM6	668 aa		4.95	□□□□□ -1.62
CHD9-209	ENST00000564255	C3orf67	Q6ZVT6	689 aa		4.95	□□□□□ -1.62
CHD9-209	ENST00000564255	SLAIN1	Q8ND83	568 aa		4.94	□□□□□ -1.62
CHD9-209	ENST00000564255	METRN	Q9UJH8	293 aa		4.94	□□□□□ -1.62
CHD9-209	ENST00000564255	PHOX2B	Q99453	314 aa		4.94	□□□□□ -1.62
CHD9-209	ENST00000564255	GPCPD1	Q9NPB8	672 aa		4.94	□□□□□ -1.62
CHD9-209	ENST00000564255	FBXW7	Q969H0	707 aa		4.94	□□□□□ -1.62
CHD9-209	ENST00000564255	JPH4	Q96JJ6	628 aa		4.94	□□□□□ -1.62
CHD9-209	ENST00000564255	MAP3K7	O43318	606 aa		4.93	□□□□□ -1.62
CHD9-209	ENST00000564255	POTEI	P0CG38	1075 aa		4.93	□□□□□ -1.62
CHD9-209	ENST00000564255	TSR1	Q2NL82	804 aa	Known RBP	4.93	□□□□□ -1.62
CHD9-209	ENST00000564255	TTC13	Q8NBP0	860 aa		4.93	□□□□□ -1.62
CHD9-209	ENST00000564255	C1orf115	Q9H7X2	142 aa		4.93	□□□□□ -1.62
CHD9-209	ENST00000564255		A6NJR5	290 aa		4.93	□□□□□ -1.62
CHD9-209	ENST00000564255	SKIV2L	Q15477	1246 aa	Known RBP	4.92	□□□□□ -1.62
CHD9-209	ENST00000564255	CERK	Q8TCT0	537 aa		4.92	□□□□□ -1.62
CHD9-209	ENST00000564255	SSTR3	P32745	418 aa	Predicted RBP	4.92	□□□□□ -1.62
CHD9-209	ENST00000564255	MDM2	Q00987	491 aa	Predicted RBP	4.92	□□□□□ -1.62
CHD9-209	ENST00000564255	RBM33	Q96EV2	1170 aa	Known RBP	4.92	□□□□□ -1.62
CHD9-209	ENST00000564255	FAM217B	Q9NTX9	383 aa	Predicted RBP	4.91	□□□□□ -1.62
CHD9-209	ENST00000564255	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	4.91	□□□□□ -1.62
CHD9-209	ENST00000564255	OAT	P04181	439 aa		4.91	□□□□□ -1.62
CHD9-209	ENST00000564255	UBTF	P17480	764 aa	Known RBP	4.91	□□□□□ -1.62
CHD9-209	ENST00000564255	FOSB	P53539	338 aa		4.91	□□□□□ -1.62
CHD9-209	ENST00000564255	RBM27	Q9P2N5	1060 aa	Known RBP	4.91	□□□□□ -1.62
CHD9-209	ENST00000564255	ADGRG1	Q9Y653	693 aa		4.91	□□□□□ -1.62
CHD9-209	ENST00000564255	PADI6	Q6TGC4	694 aa		4.9	□□□□□ -1.62
CHD9-209	ENST00000564255	METTL3	Q86U44	580 aa	Known RBP	4.9	□□□□□ -1.62
CHD9-209	ENST00000564255	PXYLP1	Q8TE99	480 aa		4.9	□□□□□ -1.62
CHD9-209	ENST00000564255	MCM6	Q14566	821 aa		4.89	□□□□□ -1.63
CHD9-209	ENST00000564255	C6orf132	Q5T0Z8	1188 aa		4.89	□□□□□ -1.63
CHD9-209	ENST00000564255	TRAK2	O60296	914 aa		4.88	□□□□□ -1.63
CHD9-209	ENST00000564255	ZDHHC16	Q969W1	377 aa		4.88	□□□□□ -1.63
CHD9-209	ENST00000564255	BEGAIN	Q9BUH8	593 aa		4.88	□□□□□ -1.63
CHD9-209	ENST00000564255	FAM161A	Q3B820	660 aa		4.87	□□□□□ -1.63
CHD9-209	ENST00000564255	PROCA1	Q8NCQ7	364 aa	Predicted RBP	4.87	□□□□□ -1.63
CHD9-209	ENST00000564255	CLUAP1	Q96AJ1	413 aa		4.87	□□□□□ -1.63
CHD9-209	ENST00000564255	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	4.87	□□□□□ -1.63
CHD9-209	ENST00000564255	PRSS12	P56730	875 aa		4.86	□□□□□ -1.63
CHD9-209	ENST00000564255	MYSM1	Q5VVJ2	828 aa		4.86	□□□□□ -1.63
CHD9-209	ENST00000564255	ARID3C	A6NKF2	412 aa		4.86	□□□□□ -1.63
CHD9-209	ENST00000564255	HOXB3	P14651	431 aa	Predicted RBP	4.86	□□□□□ -1.63
CHD9-209	ENST00000564255	ADAM33	Q9BZ11	813 aa		4.86	□□□□□ -1.63
CHD9-209	ENST00000564255	ZSWIM6	Q9HCJ5	1215 aa		4.86	□□□□□ -1.63
CHD9-209	ENST00000564255	APBB1	O00213	710 aa		4.86	□□□□□ -1.63
CHD9-209	ENST00000564255	TUSC1	Q2TAM9	212 aa		4.86	□□□□□ -1.63
CHD9-209	ENST00000564255	ZNF454	Q8N9F8	522 aa		4.86	□□□□□ -1.63
CHD9-209	ENST00000564255	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	4.85	□□□□□ -1.63
CHD9-209	ENST00000564255	FNBP4	Q8N3X1	1017 aa	Predicted RBP	4.85	□□□□□ -1.63
CHD9-209	ENST00000564255	BANK1	Q8NDB2	785 aa		4.85	□□□□□ -1.63
CHD9-209	ENST00000564255	NLRP7	Q8WX94	980 aa		4.85	□□□□□ -1.63
CHD9-209	ENST00000564255	TBC1D2	Q9BYX2	928 aa		4.85	□□□□□ -1.63
CHD9-209	ENST00000564255	CLK2	P49760	499 aa	Known RBP	4.84	□□□□□ -1.63
CHD9-209	ENST00000564255	DOK7	Q18PE1	504 aa		4.84	□□□□□ -1.63
CHD9-209	ENST00000564255	RBM46	Q8TBY0	533 aa	Known RBP	4.84	□□□□□ -1.63
CHD9-209	ENST00000564255	EYA1	Q99502	592 aa		4.84	□□□□□ -1.63
CHD9-209	ENST00000564255	SPDYE5	A6NIY4	337 aa		4.84	□□□□□ -1.63
CHD9-209	ENST00000564255	DIXDC1	Q155Q3	683 aa		4.84	□□□□□ -1.63
CHD9-209	ENST00000564255	PPP2R2D	Q66LE6	453 aa		4.84	□□□□□ -1.63
CHD9-209	ENST00000564255	PROSER2	Q86WR7	435 aa	Predicted RBP	4.84	□□□□□ -1.63
CHD9-209	ENST00000564255	KHSRP	Q92945	711 aa	Known RBP eCLIP	4.84	□□□□□ -1.63	9e-7	■■■□□ 19.2
CHD9-209	ENST00000564255	CDCA7L	Q96GN5	454 aa		4.84	□□□□□ -1.63
CHD9-209	ENST00000564255	FAM198A	Q9UFP1	575 aa		4.84	□□□□□ -1.63
CHD9-209	ENST00000564255	NUDT7	P0C024	238 aa		4.83	□□□□□ -1.64
CHD9-209	ENST00000564255	ARSI	Q5FYB1	569 aa		4.83	□□□□□ -1.64
CHD9-209	ENST00000564255	GPR153	Q6NV75	609 aa		4.83	□□□□□ -1.64
CHD9-209	ENST00000564255	ARID3A	Q99856	593 aa		4.83	□□□□□ -1.64
CHD9-209	ENST00000564255	POLR3E	Q9NVU0	708 aa		4.83	□□□□□ -1.64
CHD9-209	ENST00000564255	FBXO31	Q5XUX0	539 aa	Predicted RBP	4.83	□□□□□ -1.64
CHD9-209	ENST00000564255	CD46	P15529	392 aa		4.83	□□□□□ -1.64
CHD9-209	ENST00000564255	RFC5	P40937	340 aa		4.83	□□□□□ -1.64
CHD9-209	ENST00000564255	SPIRE2	Q8WWL2	714 aa		4.83	□□□□□ -1.64
CHD9-209	ENST00000564255	POTEJ	P0CG39	1038 aa		4.82	□□□□□ -1.64
CHD9-209	ENST00000564255	COL9A1	P20849	921 aa		4.82	□□□□□ -1.64
CHD9-209	ENST00000564255	POM121	Q96HA1	1249 aa		4.82	□□□□□ -1.64
CHD9-209	ENST00000564255	SOCS7	O14512	581 aa		4.82	□□□□□ -1.64
CHD9-209	ENST00000564255	LIMD1	Q9UGP4	676 aa		4.82	□□□□□ -1.64
CHD9-209	ENST00000564255	RCCD1	A6NED2	376 aa		4.81	□□□□□ -1.64
CHD9-209	ENST00000564255	SPTLC1	O15269	473 aa		4.81	□□□□□ -1.64
CHD9-209	ENST00000564255	TMEM259	Q4ZIN3	620 aa		4.81	□□□□□ -1.64
CHD9-209	ENST00000564255	RIC3	Q7Z5B4	369 aa		4.81	□□□□□ -1.64
CHD9-209	ENST00000564255	CCDC82	Q8N4S0	544 aa		4.81	□□□□□ -1.64
CHD9-209	ENST00000564255	BCL2L12	Q9HB09	334 aa		4.81	□□□□□ -1.64
CHD9-209	ENST00000564255	LHX6	Q9UPM6	363 aa		4.81	□□□□□ -1.64
CHD9-209	ENST00000564255	COG6	Q9Y2V7	657 aa		4.81	□□□□□ -1.64
CHD9-209	ENST00000564255	PSD	A5PKW4	1024 aa	Predicted RBP	4.8	□□□□□ -1.64
CHD9-209	ENST00000564255	RIMBP2	O15034	1052 aa		4.8	□□□□□ -1.64
CHD9-209	ENST00000564255	PPP4R3B	Q5MIZ7	849 aa		4.8	□□□□□ -1.64
CHD9-209	ENST00000564255	TSKS	Q9UJT2	592 aa		4.8	□□□□□ -1.64
CHD9-209	ENST00000564255	GJA5	P36382	358 aa		4.8	□□□□□ -1.64
CHD9-209	ENST00000564255	SNRK	Q9NRH2	765 aa		4.8	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms