RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 WASHC2CQ9Y4E1 1318 aa13.18□□□□□ -0.3
VPS39-207ENST00000563692 MROH2AA6NES4 1674 aa13.18□□□□□ -0.3
VPS39-207ENST00000563692 SETD5Q9C0A6 1442 aa13.16□□□□□ -0.3
VPS39-207ENST00000563692 CLTCQ00610 1675 aaKnown RBP13.15□□□□□ -0.3
VPS39-207ENST00000563692 TCOF1Q13428 1488 aaKnown RBP13.15□□□□□ -0.3
VPS39-207ENST00000563692 CLSPNQ9HAW4 1339 aa13.14□□□□□ -0.31
VPS39-207ENST00000563692 PTPRKQ15262 1439 aa13.14□□□□□ -0.31
VPS39-207ENST00000563692 FAM135AQ9P2D6 1515 aa13.14□□□□□ -0.31
VPS39-207ENST00000563692 PTPN23Q9H3S7 1636 aa13.14□□□□□ -0.31
VPS39-207ENST00000563692 FBXO41Q8TF61 875 aa13.14□□□□□ -0.31
VPS39-207ENST00000563692 MAST1Q9Y2H9 1570 aa13.14□□□□□ -0.31
VPS39-207ENST00000563692 KDM5DQ9BY66 1539 aa13.13□□□□□ -0.31
VPS39-207ENST00000563692 KIF15Q9NS87 1388 aa13.12□□□□□ -0.31
VPS39-207ENST00000563692 RRP7BPQ9NSQ0 103 aa13.12□□□□□ -0.31
VPS39-207ENST00000563692 ABCC5O15440 1437 aa13.12□□□□□ -0.31
VPS39-207ENST00000563692 ACIN1Q9UKV3 1341 aaKnown RBP13.12□□□□□ -0.31
VPS39-207ENST00000563692 SHANK2Q9UPX8 1470 aa13.11□□□□□ -0.31
VPS39-207ENST00000563692 RAB3GAP2Q9H2M9 1393 aa13.11□□□□□ -0.31
VPS39-207ENST00000563692 TNRQ92752 1358 aa13.1□□□□□ -0.31
VPS39-207ENST00000563692 ANKRD30AQ9BXX3 1397 aa13.1□□□□□ -0.31
VPS39-207ENST00000563692 DUOX2Q9NRD8 1548 aa13.1□□□□□ -0.31
VPS39-207ENST00000563692 PTPRTO14522 1441 aa13.1□□□□□ -0.31
VPS39-207ENST00000563692 DAPK1P53355 1430 aa13.1□□□□□ -0.31
VPS39-207ENST00000563692 NCOA1Q15788 1441 aa13.1□□□□□ -0.31
VPS39-207ENST00000563692 PZPP20742 1482 aa13.1□□□□□ -0.31
VPS39-207ENST00000563692 PKD2Q13563 968 aa13.09□□□□□ -0.31
VPS39-207ENST00000563692 CERKQ8TCT0 537 aa13.09□□□□□ -0.31
VPS39-207ENST00000563692 FBXO31Q5XUX0 539 aaPredicted RBP13.08□□□□□ -0.32
VPS39-207ENST00000563692 CHIC2Q9UKJ5 165 aa13.08□□□□□ -0.32
VPS39-207ENST00000563692 CAMSAP1Q5T5Y3 1602 aa13.08□□□□□ -0.32
VPS39-207ENST00000563692 DHX57Q6P158 1386 aaKnown RBP13.07□□□□□ -0.32
VPS39-207ENST00000563692 CEP170BQ9Y4F5 1589 aaPredicted RBP13.07□□□□□ -0.32
VPS39-207ENST00000563692 ERBINQ96RT1 1412 aa13.07□□□□□ -0.32
VPS39-207ENST00000563692 MYO3AQ8NEV4 1616 aa13.07□□□□□ -0.32
VPS39-207ENST00000563692 EIF2AK4Q9P2K8 1649 aaKnown RBP13.07□□□□□ -0.32
VPS39-207ENST00000563692 KANK1Q14678 1352 aa13.07□□□□□ -0.32
VPS39-207ENST00000563692 A2ML1A8K2U0 1454 aa13.06□□□□□ -0.32
VPS39-207ENST00000563692 PLA2R1Q13018 1463 aa13.06□□□□□ -0.32
VPS39-207ENST00000563692 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.06□□□□□ -0.329e-6■■■□□ 18.9
VPS39-207ENST00000563692 NCKAP5LQ9HCH0 1330 aa13.06□□□□□ -0.32
VPS39-207ENST00000563692 DNMT1P26358 1616 aaKnown RBP13.06□□□□□ -0.32
VPS39-207ENST00000563692 RNF17Q9BXT8 1623 aaKnown RBP13.06□□□□□ -0.32
VPS39-207ENST00000563692 HFM1A2PYH4 1435 aa13.05□□□□□ -0.32
VPS39-207ENST00000563692 STRCQ7RTU9 1775 aa13.05□□□□□ -0.32
VPS39-207ENST00000563692 ABCC3O15438 1527 aa13.05□□□□□ -0.32
VPS39-207ENST00000563692 THEMISQ8N1K5 641 aaPredicted RBP13.04□□□□□ -0.32
VPS39-207ENST00000563692 ZNF142P52746 1687 aaPredicted RBP13.04□□□□□ -0.32
VPS39-207ENST00000563692 NLRP1Q9C000 1473 aa13.04□□□□□ -0.32
VPS39-207ENST00000563692 CROCC2H7BZ55 1655 aa13.03□□□□□ -0.32
VPS39-207ENST00000563692 ROCK1Q13464 1354 aa13.03□□□□□ -0.32
VPS39-207ENST00000563692 ZC3H13Q5T200 1668 aaKnown RBP13.02□□□□□ -0.32
VPS39-207ENST00000563692 ANKLE2Q86XL3 938 aa13.01□□□□□ -0.33
VPS39-207ENST00000563692 NAIPQ13075 1403 aa13.01□□□□□ -0.33
VPS39-207ENST00000563692 PRDM15P57071 1507 aaPredicted RBP12.99□□□□□ -0.33
VPS39-207ENST00000563692 ADGRL2O95490 1459 aa12.99□□□□□ -0.33
VPS39-207ENST00000563692 ERVK-7P63135 1459 aa12.99□□□□□ -0.33
VPS39-207ENST00000563692 MROH1Q8NDA8 1641 aa12.99□□□□□ -0.33
VPS39-207ENST00000563692 UGGT1Q9NYU2 1555 aa12.98□□□□□ -0.33
VPS39-207ENST00000563692 SPATA31D1Q6ZQQ2 1576 aa12.98□□□□□ -0.33
VPS39-207ENST00000563692 ARHGAP31Q2M1Z3 1444 aa12.97□□□□□ -0.33
VPS39-207ENST00000563692 ANKRD50Q9ULJ7 1429 aa12.97□□□□□ -0.33
VPS39-207ENST00000563692 TRIM52Q96A61 297 aa12.97□□□□□ -0.33
VPS39-207ENST00000563692 STAG3Q9UJ98 1225 aa12.97□□□□□ -0.33
VPS39-207ENST00000563692 ZNF335Q9H4Z2 1342 aaPredicted RBP12.96□□□□□ -0.33
VPS39-207ENST00000563692 TIMELESSQ9UNS1 1208 aa12.95□□□□□ -0.34
VPS39-207ENST00000563692 CEP152O94986 1710 aa12.95□□□□□ -0.34
VPS39-207ENST00000563692 DEPDC5O75140 1603 aa12.94□□□□□ -0.34
VPS39-207ENST00000563692 IQSEC2Q5JU85 1478 aa12.93□□□□□ -0.34
VPS39-207ENST00000563692 LTBP4Q8N2S1 1624 aa12.93□□□□□ -0.34
VPS39-207ENST00000563692 EID1Q9Y6B2 187 aa12.93□□□□□ -0.34
VPS39-207ENST00000563692 LMTK2Q8IWU2 1503 aa12.93□□□□□ -0.34
VPS39-207ENST00000563692 NPHP4O75161 1426 aaPredicted RBP12.92□□□□□ -0.34
VPS39-207ENST00000563692 GCC2Q8IWJ2 1684 aa12.91□□□□□ -0.34
VPS39-207ENST00000563692 TXNDC2Q86VQ3 553 aa12.9□□□□□ -0.34
VPS39-207ENST00000563692 VWDEQ8N2E2 1590 aa12.9□□□□□ -0.35
VPS39-207ENST00000563692 POLR1AO95602 1720 aaPredicted RBP12.89□□□□□ -0.35
VPS39-207ENST00000563692 UBAP1LF5GYI3 381 aa12.89□□□□□ -0.35
VPS39-207ENST00000563692 NEUROD1Q13562 356 aa12.89□□□□□ -0.35
VPS39-207ENST00000563692 MPHOSPH9Q99550 1183 aa12.89□□□□□ -0.35
VPS39-207ENST00000563692 SLC52A1Q9NWF4 448 aa12.89□□□□□ -0.35
VPS39-207ENST00000563692 MED14O60244 1454 aa12.89□□□□□ -0.35
VPS39-207ENST00000563692 SCAF11Q99590 1463 aaKnown RBP12.89□□□□□ -0.35
VPS39-207ENST00000563692 NEURL4Q96JN8 1562 aa12.89□□□□□ -0.35
VPS39-207ENST00000563692 EFCAB6Q5THR3 1501 aa12.88□□□□□ -0.35
VPS39-207ENST00000563692 CFAP65Q6ZU64 1925 aaKnown RBP12.88□□□□□ -0.35
VPS39-207ENST00000563692 IDI1Q13907 227 aa12.88□□□□□ -0.35
VPS39-207ENST00000563692 RPRD2Q5VT52 1461 aaKnown RBP12.88□□□□□ -0.35
VPS39-207ENST00000563692 CPS1P31327 1500 aa12.87□□□□□ -0.35
VPS39-207ENST00000563692 NUP155O75694 1391 aa12.86□□□□□ -0.35
VPS39-207ENST00000563692 TMEM2Q9UHN6 1383 aa12.86□□□□□ -0.35
VPS39-207ENST00000563692 NOS1P29475 1434 aa12.86□□□□□ -0.35
VPS39-207ENST00000563692 LTKP29376 864 aa12.85□□□□□ -0.35
VPS39-207ENST00000563692 SIN3AQ96ST3 1273 aa12.85□□□□□ -0.35
VPS39-207ENST00000563692 SLC4A1APQ9BWU0 796 aaKnown RBP12.85□□□□□ -0.35
VPS39-207ENST00000563692 UBR1Q8IWV7 1749 aa12.85□□□□□ -0.35
VPS39-207ENST00000563692 SLIT1O75093 1534 aa12.84□□□□□ -0.35
VPS39-207ENST00000563692 IQGAP1P46940 1657 aa12.84□□□□□ -0.35
VPS39-207ENST00000563692 ZNF316A6NFI3 1004 aaPredicted RBP12.84□□□□□ -0.35
VPS39-207ENST00000563692 TOM1O60784 492 aa12.84□□□□□ -0.35
VPS39-207ENST00000563692 HDGFP51858 240 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms