RNA–Protein interactions for RNA: ENST00000563343.5

HERPUD1-206, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 4

Gene HERPUD1, Length 567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-206ENST00000563343 KIAA1107Q9UPP5 1409 aa12.96□□□□□ -0.34
HERPUD1-206ENST00000563343 RNF17Q9BXT8 1623 aaKnown RBP12.95□□□□□ -0.34
HERPUD1-206ENST00000563343 MED14O60244 1454 aa12.95□□□□□ -0.34
HERPUD1-206ENST00000563343 IQGAP1P46940 1657 aa12.95□□□□□ -0.34
HERPUD1-206ENST00000563343 XIRP1Q702N8 1843 aaKnown RBP12.95□□□□□ -0.34
HERPUD1-206ENST00000563343 HNRNPMP52272 730 aaKnown RBP eCLIP12.94□□□□□ -0.34
HERPUD1-206ENST00000563343 RGS17Q9UGC6 210 aaPredicted RBP12.94□□□□□ -0.34
HERPUD1-206ENST00000563343 SYNMO15061 1565 aa12.94□□□□□ -0.34
HERPUD1-206ENST00000563343 GGT6Q6P531 493 aa12.93□□□□□ -0.34
HERPUD1-206ENST00000563343 ZC3H13Q5T200 1668 aaKnown RBP12.93□□□□□ -0.34
HERPUD1-206ENST00000563343 PLEKHH2Q8IVE3 1493 aa12.91□□□□□ -0.34
HERPUD1-206ENST00000563343 LRRC7Q96NW7 1537 aa12.91□□□□□ -0.34
HERPUD1-206ENST00000563343 PZPP20742 1482 aa12.91□□□□□ -0.34
HERPUD1-206ENST00000563343 FAM135AQ9P2D6 1515 aa12.9□□□□□ -0.34
HERPUD1-206ENST00000563343 ZNF777Q9ULD5 760 aaPredicted RBP12.9□□□□□ -0.34
HERPUD1-206ENST00000563343 TNRQ92752 1358 aa12.9□□□□□ -0.34
HERPUD1-206ENST00000563343 KDM5DQ9BY66 1539 aa12.89□□□□□ -0.35
HERPUD1-206ENST00000563343 UBTFP17480 764 aaKnown RBP12.89□□□□□ -0.35
HERPUD1-206ENST00000563343 FYCO1Q9BQS8 1478 aa12.89□□□□□ -0.35
HERPUD1-206ENST00000563343 NPHP4O75161 1426 aaPredicted RBP12.88□□□□□ -0.35
HERPUD1-206ENST00000563343 FBXO31Q5XUX0 539 aaPredicted RBP12.88□□□□□ -0.35
HERPUD1-206ENST00000563343 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.88□□□□□ -0.35
HERPUD1-206ENST00000563343 UGGT1Q9NYU2 1555 aa12.88□□□□□ -0.35
HERPUD1-206ENST00000563343 MBD5Q9P267 1494 aa12.87□□□□□ -0.35
HERPUD1-206ENST00000563343 SETD1AO15047 1707 aaKnown RBP12.87□□□□□ -0.35
HERPUD1-206ENST00000563343 NLRP1Q9C000 1473 aa12.86□□□□□ -0.35
HERPUD1-206ENST00000563343 EHMT2Q96KQ7 1210 aa12.86□□□□□ -0.35
HERPUD1-206ENST00000563343 TIAM1Q13009 1591 aa12.86□□□□□ -0.35
HERPUD1-206ENST00000563343 ANKLE2Q86XL3 938 aa12.85□□□□□ -0.35
HERPUD1-206ENST00000563343 RTEL1-TNFRSF6BF6WH68 1400 aa12.85□□□□□ -0.35
HERPUD1-206ENST00000563343 DHX29Q7Z478 1369 aaKnown RBP12.84□□□□□ -0.35
HERPUD1-206ENST00000563343 MIA2Q96PC5 1412 aa12.84□□□□□ -0.35
HERPUD1-206ENST00000563343 UBR1Q8IWV7 1749 aa12.83□□□□□ -0.36
HERPUD1-206ENST00000563343 THEMISQ8N1K5 641 aaPredicted RBP12.82□□□□□ -0.36
HERPUD1-206ENST00000563343 CFDP1Q9UEE9 299 aaPredicted RBP12.82□□□□□ -0.36
HERPUD1-206ENST00000563343 POTEAQ6S8J7 498 aa12.81□□□□□ -0.36
HERPUD1-206ENST00000563343 ZNF644Q9H582 1327 aaPredicted RBP12.81□□□□□ -0.36
HERPUD1-206ENST00000563343 CFAP65Q6ZU64 1925 aaKnown RBP12.8□□□□□ -0.36
HERPUD1-206ENST00000563343 CCNB3Q8WWL7 1395 aa12.8□□□□□ -0.36
HERPUD1-206ENST00000563343 KIF3BO15066 747 aa12.78□□□□□ -0.36
HERPUD1-206ENST00000563343 ROBO1Q9Y6N7 1651 aa12.77□□□□□ -0.36
HERPUD1-206ENST00000563343 MROH1Q8NDA8 1641 aa12.77□□□□□ -0.37
HERPUD1-206ENST00000563343 CEP152O94986 1710 aa12.76□□□□□ -0.37
HERPUD1-206ENST00000563343 FAM135BQ49AJ0 1406 aa12.76□□□□□ -0.37
HERPUD1-206ENST00000563343 ABCC3O15438 1527 aa12.76□□□□□ -0.37
HERPUD1-206ENST00000563343 SLIT1O75093 1534 aa12.75□□□□□ -0.37
HERPUD1-206ENST00000563343 ERVK-7P63135 1459 aa12.75□□□□□ -0.37
HERPUD1-206ENST00000563343 NCOA2Q15596 1464 aa12.75□□□□□ -0.37
HERPUD1-206ENST00000563343 CCDC141Q6ZP82 1450 aa12.75□□□□□ -0.37
HERPUD1-206ENST00000563343 ARHGAP23Q9P227 1491 aa12.75□□□□□ -0.37
HERPUD1-206ENST00000563343 WASHC2CQ9Y4E1 1318 aa12.75□□□□□ -0.37
HERPUD1-206ENST00000563343 EHBP1L1Q8N3D4 1523 aa12.74□□□□□ -0.37
HERPUD1-206ENST00000563343 SCAF11Q99590 1463 aaKnown RBP12.74□□□□□ -0.37
HERPUD1-206ENST00000563343 EIF2AK4Q9P2K8 1649 aaKnown RBP12.73□□□□□ -0.37
HERPUD1-206ENST00000563343 ARHGEF5Q12774 1597 aa12.73□□□□□ -0.37
HERPUD1-206ENST00000563343 MAP3K1Q13233 1512 aa12.72□□□□□ -0.37
HERPUD1-206ENST00000563343 CAMSAP2Q08AD1 1489 aa12.72□□□□□ -0.37
HERPUD1-206ENST00000563343 MTUS2Q5JR59 1369 aa12.71□□□□□ -0.37
HERPUD1-206ENST00000563343 CEP162Q5TB80 1403 aa12.71□□□□□ -0.38
HERPUD1-206ENST00000563343 PHLPP1O60346 1717 aa12.7□□□□□ -0.38
HERPUD1-206ENST00000563343 MAST1Q9Y2H9 1570 aa12.69□□□□□ -0.38
HERPUD1-206ENST00000563343 LTKP29376 864 aa12.69□□□□□ -0.38
HERPUD1-206ENST00000563343 PIK3C2BO00750 1634 aa12.69□□□□□ -0.38
HERPUD1-206ENST00000563343 KDM5AP29375 1690 aaKnown RBP12.68□□□□□ -0.38
HERPUD1-206ENST00000563343 NWD1Q149M9 1564 aa12.67□□□□□ -0.38
HERPUD1-206ENST00000563343 TET3O43151 1660 aa12.67□□□□□ -0.38
HERPUD1-206ENST00000563343 COL16A1Q07092 1604 aaPredicted RBP12.66□□□□□ -0.38
HERPUD1-206ENST00000563343 LRRC9Q6ZRR7 1453 aa12.65□□□□□ -0.38
HERPUD1-206ENST00000563343 TMEM94Q12767 1356 aa12.65□□□□□ -0.38
HERPUD1-206ENST00000563343 RSPH4AQ5TD94 716 aa12.64□□□□□ -0.39
HERPUD1-206ENST00000563343 UPF1Q92900 1129 aaKnown RBP eCLIP12.64□□□□□ -0.39
HERPUD1-206ENST00000563343 PRDM15P57071 1507 aaPredicted RBP12.63□□□□□ -0.39
HERPUD1-206ENST00000563343 LRP6O75581 1613 aa12.63□□□□□ -0.39
HERPUD1-206ENST00000563343 TXNDC2Q86VQ3 553 aa12.63□□□□□ -0.39
HERPUD1-206ENST00000563343 CHD2O14647 1828 aaKnown RBP12.62□□□□□ -0.39
HERPUD1-206ENST00000563343 SHPRHQ149N8 1683 aa12.62□□□□□ -0.39
HERPUD1-206ENST00000563343 ARHGAP31Q2M1Z3 1444 aa12.62□□□□□ -0.39
HERPUD1-206ENST00000563343 NKTRP30414 1462 aaKnown RBP12.61□□□□□ -0.39
HERPUD1-206ENST00000563343 JCADQ9P266 1359 aa12.6□□□□□ -0.39
HERPUD1-206ENST00000563343 TMEM2Q9UHN6 1383 aa12.6□□□□□ -0.39
HERPUD1-206ENST00000563343 EFCAB6Q5THR3 1501 aa12.58□□□□□ -0.4
HERPUD1-206ENST00000563343 KCNA6P17658 529 aa12.58□□□□□ -0.4
HERPUD1-206ENST00000563343 MYO5BQ9ULV0 1848 aa12.58□□□□□ -0.4
HERPUD1-206ENST00000563343 DUOX2Q9NRD8 1548 aa12.57□□□□□ -0.4
HERPUD1-206ENST00000563343 RBM33Q96EV2 1170 aaKnown RBP12.57□□□□□ -0.4
HERPUD1-206ENST00000563343 AHDC1Q5TGY3 1603 aaPredicted RBP12.56□□□□□ -0.4
HERPUD1-206ENST00000563343 TSPY4P0CV99 314 aa12.56□□□□□ -0.4
HERPUD1-206ENST00000563343 TSPY10P0CW01 314 aa12.56□□□□□ -0.4
HERPUD1-206ENST00000563343 EID1Q9Y6B2 187 aa12.56□□□□□ -0.4
HERPUD1-206ENST00000563343 CROCC2H7BZ55 1655 aa12.56□□□□□ -0.4
HERPUD1-206ENST00000563343 DIP2AQ14689 1571 aa12.56□□□□□ -0.4
HERPUD1-206ENST00000563343 FGD6Q6ZV73 1430 aa12.55□□□□□ -0.4
HERPUD1-206ENST00000563343 CDK12Q9NYV4 1490 aaPredicted RBP12.55□□□□□ -0.4
HERPUD1-206ENST00000563343 PROSER2Q86WR7 435 aaPredicted RBP12.55□□□□□ -0.4
HERPUD1-206ENST00000563343 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.54□□□□□ -0.4
HERPUD1-206ENST00000563343 MSH6P52701 1360 aa12.54□□□□□ -0.4
HERPUD1-206ENST00000563343 SRCAPQ6ZRS2 3230 aa12.54□□□□□ -0.4
HERPUD1-206ENST00000563343 ADGRB3O60242 1522 aa12.53□□□□□ -0.4
HERPUD1-206ENST00000563343 SLC26A8Q96RN1 970 aa12.53□□□□□ -0.4
HERPUD1-206ENST00000563343 SLAIN2Q9P270 581 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms