RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 KIF15Q9NS87 1388 aa14.98□□□□□ -0.01
CLK3-208ENST00000562626 CFAP65Q6ZU64 1925 aaKnown RBP14.98□□□□□ -0.01
CLK3-208ENST00000562626 DISP3Q9P2K9 1392 aa14.98□□□□□ -0.01
CLK3-208ENST00000562626 C3P01024 1663 aa14.97□□□□□ -0.01
CLK3-208ENST00000562626 RRP7BPQ9NSQ0 103 aa14.97□□□□□ -0.01
CLK3-208ENST00000562626 ARID4BQ4LE39 1312 aaPredicted RBP14.96□□□□□ -0.01
CLK3-208ENST00000562626 MLECQ14165 292 aa14.96□□□□□ -0.01
CLK3-208ENST00000562626 ANKRD30AQ9BXX3 1397 aa14.95□□□□□ -0.02
CLK3-208ENST00000562626 MROH2AA6NES4 1674 aa14.94□□□□□ -0.02
CLK3-208ENST00000562626 ROCK1Q13464 1354 aa14.94□□□□□ -0.02
CLK3-208ENST00000562626 UNC13BO14795 1591 aa14.94□□□□□ -0.02
CLK3-208ENST00000562626 ERBINQ96RT1 1412 aa14.92□□□□□ -0.02
CLK3-208ENST00000562626 PRDM15P57071 1507 aaPredicted RBP14.92□□□□□ -0.02
CLK3-208ENST00000562626 ZC3H13Q5T200 1668 aaKnown RBP14.92□□□□□ -0.02
CLK3-208ENST00000562626 CAMSAP1Q5T5Y3 1602 aa14.92□□□□□ -0.02
CLK3-208ENST00000562626 NAIPQ13075 1403 aa14.91□□□□□ -0.02
CLK3-208ENST00000562626 KIF3BO15066 747 aa14.9□□□□□ -0.02
CLK3-208ENST00000562626 ANKRD50Q9ULJ7 1429 aa14.9□□□□□ -0.02
CLK3-208ENST00000562626 VWDEQ8N2E2 1590 aa14.9□□□□□ -0.02
CLK3-208ENST00000562626 PTPRMP28827 1452 aa14.89□□□□□ -0.03
CLK3-208ENST00000562626 ABCC3O15438 1527 aa14.88□□□□□ -0.03
CLK3-208ENST00000562626 KDM5DQ9BY66 1539 aa14.87□□□□□ -0.03
CLK3-208ENST00000562626 HFM1A2PYH4 1435 aa14.87□□□□□ -0.03
CLK3-208ENST00000562626 GGT6Q6P531 493 aa14.87□□□□□ -0.03
CLK3-208ENST00000562626 IQGAP3Q86VI3 1631 aa14.87□□□□□ -0.03
CLK3-208ENST00000562626 E9PCH4 1651 aa14.85□□□□□ -0.03
CLK3-208ENST00000562626 TET3O43151 1660 aa14.84□□□□□ -0.03
CLK3-208ENST00000562626 PREX1Q8TCU6 1659 aa14.84□□□□□ -0.03
CLK3-208ENST00000562626 FAM135AQ9P2D6 1515 aa14.83□□□□□ -0.04
CLK3-208ENST00000562626 CEBPAP49715 358 aaPredicted RBP14.82□□□□□ -0.04
CLK3-208ENST00000562626 SETD1BQ9UPS6 1966 aaKnown RBP14.81□□□□□ -0.04
CLK3-208ENST00000562626 EFCAB6Q5THR3 1501 aa14.81□□□□□ -0.04
CLK3-208ENST00000562626 PLPPR3Q6T4P5 718 aa14.8□□□□□ -0.04
CLK3-208ENST00000562626 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.8□□□□□ -0.04
CLK3-208ENST00000562626 LMTK2Q8IWU2 1503 aa14.8□□□□□ -0.04
CLK3-208ENST00000562626 MYO3AQ8NEV4 1616 aa14.79□□□□□ -0.04
CLK3-208ENST00000562626 CNTLNQ9NXG0 1405 aa14.79□□□□□ -0.04
CLK3-208ENST00000562626 MYO5BQ9ULV0 1848 aa14.79□□□□□ -0.04
CLK3-208ENST00000562626 SETD5Q9C0A6 1442 aa14.77□□□□□ -0.04
CLK3-208ENST00000562626 ZMYM3Q14202 1370 aa14.77□□□□□ -0.04
CLK3-208ENST00000562626 PZPP20742 1482 aa14.76□□□□□ -0.05
CLK3-208ENST00000562626 WASHC2CQ9Y4E1 1318 aa14.76□□□□□ -0.05
CLK3-208ENST00000562626 SPHKAPQ2M3C7 1700 aa14.76□□□□□ -0.05
CLK3-208ENST00000562626 RAB3GAP2Q9H2M9 1393 aa14.75□□□□□ -0.05
CLK3-208ENST00000562626 ZNF142P52746 1687 aaPredicted RBP14.75□□□□□ -0.05
CLK3-208ENST00000562626 SYNMO15061 1565 aa14.75□□□□□ -0.05
CLK3-208ENST00000562626 SPATA31D1Q6ZQQ2 1576 aa14.75□□□□□ -0.05
CLK3-208ENST00000562626 NPATQ14207 1427 aa14.75□□□□□ -0.05
CLK3-208ENST00000562626 PPP6R1Q9UPN7 881 aa14.74□□□□□ -0.05
CLK3-208ENST00000562626 NUP155O75694 1391 aa14.73□□□□□ -0.05
CLK3-208ENST00000562626 FBXO31Q5XUX0 539 aaPredicted RBP14.73□□□□□ -0.05
CLK3-208ENST00000562626 ERVK-7P63135 1459 aa14.73□□□□□ -0.05
CLK3-208ENST00000562626 KANK1Q14678 1352 aa14.73□□□□□ -0.05
CLK3-208ENST00000562626 TRIM26Q12899 539 aaPredicted RBP14.72□□□□□ -0.05
CLK3-208ENST00000562626 ESF1Q9H501 851 aaKnown RBP14.72□□□□□ -0.05
CLK3-208ENST00000562626 ARHGAP31Q2M1Z3 1444 aa14.72□□□□□ -0.05
CLK3-208ENST00000562626 PIK3C2BO00750 1634 aa14.7□□□□□ -0.06
CLK3-208ENST00000562626 UBR1Q8IWV7 1749 aa14.7□□□□□ -0.06
CLK3-208ENST00000562626 UGGT1Q9NYU2 1555 aa14.7□□□□□ -0.06
CLK3-208ENST00000562626 CEP170BQ9Y4F5 1589 aaPredicted RBP14.68□□□□□ -0.06
CLK3-208ENST00000562626 CLTCL1P53675 1640 aa14.67□□□□□ -0.06
CLK3-208ENST00000562626 STRCQ7RTU9 1775 aa14.67□□□□□ -0.06
CLK3-208ENST00000562626 NOS1P29475 1434 aa14.66□□□□□ -0.06
CLK3-208ENST00000562626 RPRD2Q5VT52 1461 aaKnown RBP14.66□□□□□ -0.06
CLK3-208ENST00000562626 TRIM52Q96A61 297 aa14.66□□□□□ -0.06
CLK3-208ENST00000562626 TNRQ92752 1358 aa14.65□□□□□ -0.06
CLK3-208ENST00000562626 KIF1BO60333 1816 aa14.65□□□□□ -0.06
CLK3-208ENST00000562626 POLR1AO95602 1720 aaPredicted RBP14.63□□□□□ -0.07
CLK3-208ENST00000562626 PLA2R1Q13018 1463 aa14.63□□□□□ -0.07
CLK3-208ENST00000562626 KDM5AP29375 1690 aaKnown RBP14.63□□□□□ -0.07
CLK3-208ENST00000562626 FOXD1Q16676 465 aa14.63□□□□□ -0.07
CLK3-208ENST00000562626 TMEM131LA2VDJ0 1609 aa14.63□□□□□ -0.07
CLK3-208ENST00000562626 TRPM2O94759 1503 aa14.62□□□□□ -0.07
CLK3-208ENST00000562626 A2ML1A8K2U0 1454 aa14.62□□□□□ -0.07
CLK3-208ENST00000562626 UHRF1BP1Q6BDS2 1440 aa14.61□□□□□ -0.07
CLK3-208ENST00000562626 CERKQ8TCT0 537 aa14.61□□□□□ -0.07
CLK3-208ENST00000562626 PTPRTO14522 1441 aa14.6□□□□□ -0.07
CLK3-208ENST00000562626 PKD2Q13563 968 aa14.6□□□□□ -0.07
CLK3-208ENST00000562626 MPHOSPH9Q99550 1183 aa14.6□□□□□ -0.07
CLK3-208ENST00000562626 ADGRB3O60242 1522 aa14.6□□□□□ -0.07
CLK3-208ENST00000562626 NLRP1Q9C000 1473 aa14.59□□□□□ -0.07
CLK3-208ENST00000562626 HSPA2P54652 639 aa14.59□□□□□ -0.07
CLK3-208ENST00000562626 SLC4A1APQ9BWU0 796 aaKnown RBP14.59□□□□□ -0.07
CLK3-208ENST00000562626 PCGF6Q9BYE7 350 aa14.59□□□□□ -0.07
CLK3-208ENST00000562626 HRCP23327 699 aa14.57□□□□□ -0.08
CLK3-208ENST00000562626 IFT172Q9UG01 1749 aa14.57□□□□□ -0.08
CLK3-208ENST00000562626 NEURL4Q96JN8 1562 aa14.56□□□□□ -0.08
CLK3-208ENST00000562626 PPLO60437 1756 aa14.55□□□□□ -0.08
CLK3-208ENST00000562626 IDI1Q13907 227 aa14.55□□□□□ -0.08
CLK3-208ENST00000562626 SLIT1O75093 1534 aa14.51□□□□□ -0.09
CLK3-208ENST00000562626 ARHGAP23Q9P227 1491 aa14.51□□□□□ -0.09
CLK3-208ENST00000562626 DHX57Q6P158 1386 aaKnown RBP14.51□□□□□ -0.09
CLK3-208ENST00000562626 IQGAP1P46940 1657 aa14.5□□□□□ -0.09
CLK3-208ENST00000562626 ANKRD30BQ9BXX2 1392 aa14.49□□□□□ -0.09
CLK3-208ENST00000562626 NEXMIFQ5QGS0 1516 aa14.49□□□□□ -0.09
CLK3-208ENST00000562626 SLC52A1Q9NWF4 448 aa14.48□□□□□ -0.09
CLK3-208ENST00000562626 ZFYVE9O95405 1425 aa14.48□□□□□ -0.09
CLK3-208ENST00000562626 ACIN1Q9UKV3 1341 aaKnown RBP14.47□□□□□ -0.09
CLK3-208ENST00000562626 NRXN3Q9Y4C0 1643 aa14.47□□□□□ -0.09
CLK3-208ENST00000562626 STRCP1A6NGW2 1772 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms