RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 GGT6Q6P531 493 aa25.54■■□□□ 1.68
CLK3-207ENST00000562389 PPP6R1Q9UPN7 881 aa25.54■■□□□ 1.68
CLK3-207ENST00000562389 CLTCQ00610 1675 aaKnown RBP25.53■■□□□ 1.68
CLK3-207ENST00000562389 ESF1Q9H501 851 aaKnown RBP25.52■■□□□ 1.68
CLK3-207ENST00000562389 ROCK1Q13464 1354 aa25.52■■□□□ 1.68
CLK3-207ENST00000562389 C3P01024 1663 aa25.52■■□□□ 1.68
CLK3-207ENST00000562389 MROH1Q8NDA8 1641 aa25.49■■□□□ 1.67
CLK3-207ENST00000562389 KDM5DQ9BY66 1539 aa25.48■■□□□ 1.67
CLK3-207ENST00000562389 DEPDC5O75140 1603 aa25.48■■□□□ 1.67
CLK3-207ENST00000562389 ZC3H13Q5T200 1668 aaKnown RBP25.46■■□□□ 1.67
CLK3-207ENST00000562389 ITGAEP38570 1179 aa25.46■■□□□ 1.67
CLK3-207ENST00000562389 PRDM15P57071 1507 aaPredicted RBP25.46■■□□□ 1.67
CLK3-207ENST00000562389 ANKRD50Q9ULJ7 1429 aa25.44■■□□□ 1.66
CLK3-207ENST00000562389 ZMYM3Q14202 1370 aa25.43■■□□□ 1.66
CLK3-207ENST00000562389 CEBPAP49715 358 aaPredicted RBP25.42■■□□□ 1.66
CLK3-207ENST00000562389 PLPPR3Q6T4P5 718 aa25.41■■□□□ 1.66
CLK3-207ENST00000562389 ABCC3O15438 1527 aa25.41■■□□□ 1.66
CLK3-207ENST00000562389 WASHC2CQ9Y4E1 1318 aa25.39■■□□□ 1.66
CLK3-207ENST00000562389 CEP152O94986 1710 aa25.39■■□□□ 1.65
CLK3-207ENST00000562389 PREX1Q8TCU6 1659 aa25.38■■□□□ 1.65
CLK3-207ENST00000562389 SETD1BQ9UPS6 1966 aaKnown RBP25.38■■□□□ 1.65
CLK3-207ENST00000562389 NPATQ14207 1427 aa25.37■■□□□ 1.65
CLK3-207ENST00000562389 GCC2Q8IWJ2 1684 aa25.36■■□□□ 1.65
CLK3-207ENST00000562389 VWDEQ8N2E2 1590 aa25.36■■□□□ 1.65
CLK3-207ENST00000562389 CAMSAP1Q5T5Y3 1602 aa25.35■■□□□ 1.65
CLK3-207ENST00000562389 UNC13BO14795 1591 aa25.35■■□□□ 1.65
CLK3-207ENST00000562389 PZPP20742 1482 aa25.34■■□□□ 1.65
CLK3-207ENST00000562389 LMTK3Q96Q04 1460 aa25.33■■□□□ 1.65
CLK3-207ENST00000562389 KANK1Q14678 1352 aa25.32■■□□□ 1.64
CLK3-207ENST00000562389 LMTK2Q8IWU2 1503 aa25.32■■□□□ 1.64
CLK3-207ENST00000562389 HFM1A2PYH4 1435 aa25.29■■□□□ 1.64
CLK3-207ENST00000562389 NAIPQ13075 1403 aa25.29■■□□□ 1.64
CLK3-207ENST00000562389 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.29■■□□□ 1.643e-9■■■■■ 27.4
CLK3-207ENST00000562389 UHRF1BP1Q6BDS2 1440 aa25.28■■□□□ 1.64
CLK3-207ENST00000562389 ARHGAP31Q2M1Z3 1444 aa25.26■■□□□ 1.63
CLK3-207ENST00000562389 MYO3AQ8NEV4 1616 aa25.26■■□□□ 1.63
CLK3-207ENST00000562389 IQGAP3Q86VI3 1631 aa25.24■■□□□ 1.63
CLK3-207ENST00000562389 ZNF142P52746 1687 aaPredicted RBP25.23■■□□□ 1.63
CLK3-207ENST00000562389 SPATA31D1Q6ZQQ2 1576 aa25.23■■□□□ 1.63
CLK3-207ENST00000562389 EFCAB6Q5THR3 1501 aa25.23■■□□□ 1.63
CLK3-207ENST00000562389 TET3O43151 1660 aa25.23■■□□□ 1.63
CLK3-207ENST00000562389 ERVK-7P63135 1459 aa25.21■■□□□ 1.63
CLK3-207ENST00000562389 FBXO31Q5XUX0 539 aaPredicted RBP25.2■■□□□ 1.62
CLK3-207ENST00000562389 TNRQ92752 1358 aa25.19■■□□□ 1.62
CLK3-207ENST00000562389 CFAP65Q6ZU64 1925 aaKnown RBP25.19■■□□□ 1.62
CLK3-207ENST00000562389 CEP170BQ9Y4F5 1589 aaPredicted RBP25.18■■□□□ 1.62
CLK3-207ENST00000562389 NUP155O75694 1391 aa25.16■■□□□ 1.62
CLK3-207ENST00000562389 RPRD2Q5VT52 1461 aaKnown RBP25.15■■□□□ 1.62
CLK3-207ENST00000562389 A2ML1A8K2U0 1454 aa25.14■■□□□ 1.61
CLK3-207ENST00000562389 NLRP1Q9C000 1473 aa25.14■■□□□ 1.61
CLK3-207ENST00000562389 HSPA2P54652 639 aa25.12■■□□□ 1.61
CLK3-207ENST00000562389 E9PCH4 1651 aa25.12■■□□□ 1.61
CLK3-207ENST00000562389 NOS1P29475 1434 aa25.09■■□□□ 1.61
CLK3-207ENST00000562389 SYNMO15061 1565 aa25.07■■□□□ 1.6
CLK3-207ENST00000562389 SETD5Q9C0A6 1442 aa25.06■■□□□ 1.6
CLK3-207ENST00000562389 STRCQ7RTU9 1775 aa25.04■■□□□ 1.6
CLK3-207ENST00000562389 UGGT1Q9NYU2 1555 aa25.04■■□□□ 1.6
CLK3-207ENST00000562389 PLA2R1Q13018 1463 aa25.03■■□□□ 1.6
CLK3-207ENST00000562389 UBR1Q8IWV7 1749 aa25.01■■□□□ 1.59
CLK3-207ENST00000562389 PIK3C2BO00750 1634 aa25.01■■□□□ 1.59
CLK3-207ENST00000562389 TRIM52Q96A61 297 aa25■■□□□ 1.59
CLK3-207ENST00000562389 ACIN1Q9UKV3 1341 aaKnown RBP25■■□□□ 1.59
CLK3-207ENST00000562389 KDM5AP29375 1690 aaKnown RBP25■■□□□ 1.59
CLK3-207ENST00000562389 SPHKAPQ2M3C7 1700 aa24.98■■□□□ 1.59
CLK3-207ENST00000562389 RAB3GAP2Q9H2M9 1393 aa24.97■■□□□ 1.59
CLK3-207ENST00000562389 THEMISQ8N1K5 641 aaPredicted RBP24.95■■□□□ 1.58
CLK3-207ENST00000562389 SLC52A1Q9NWF4 448 aa24.95■■□□□ 1.58
CLK3-207ENST00000562389 POLR1AO95602 1720 aaPredicted RBP24.95■■□□□ 1.58
CLK3-207ENST00000562389 PTPRTO14522 1441 aa24.94■■□□□ 1.58
CLK3-207ENST00000562389 ADGRB3O60242 1522 aa24.93■■□□□ 1.58
CLK3-207ENST00000562389 IDI1Q13907 227 aa24.93■■□□□ 1.58
CLK3-207ENST00000562389 SLC4A1APQ9BWU0 796 aaKnown RBP24.92■■□□□ 1.58
CLK3-207ENST00000562389 PKD2Q13563 968 aa24.91■■□□□ 1.58
CLK3-207ENST00000562389 TRPM2O94759 1503 aa24.9■■□□□ 1.58
CLK3-207ENST00000562389 HRCP23327 699 aa24.89■■□□□ 1.58
CLK3-207ENST00000562389 SLIT1O75093 1534 aa24.89■■□□□ 1.57
CLK3-207ENST00000562389 ARHGAP23Q9P227 1491 aa24.89■■□□□ 1.57
CLK3-207ENST00000562389 DMRT2Q9Y5R5 561 aa24.88■■□□□ 1.57
CLK3-207ENST00000562389 TMEM131LA2VDJ0 1609 aa24.87■■□□□ 1.57
CLK3-207ENST00000562389 MYO5BQ9ULV0 1848 aa24.87■■□□□ 1.57
CLK3-207ENST00000562389 NEURL4Q96JN8 1562 aa24.87■■□□□ 1.57
CLK3-207ENST00000562389 NCKAP5LQ9HCH0 1330 aa24.86■■□□□ 1.57
CLK3-207ENST00000562389 MPHOSPH9Q99550 1183 aa24.85■■□□□ 1.57
CLK3-207ENST00000562389 STAG3Q9UJ98 1225 aa24.85■■□□□ 1.57
CLK3-207ENST00000562389 CLTCL1P53675 1640 aa24.83■■□□□ 1.57
CLK3-207ENST00000562389 ANKLE2Q86XL3 938 aa24.83■■□□□ 1.57
CLK3-207ENST00000562389 MED14O60244 1454 aa24.83■■□□□ 1.56
CLK3-207ENST00000562389 TMEM2Q9UHN6 1383 aa24.82■■□□□ 1.56
CLK3-207ENST00000562389 TRIM26Q12899 539 aaPredicted RBP24.8■■□□□ 1.56
CLK3-207ENST00000562389 SCAF11Q99590 1463 aaKnown RBP24.8■■□□□ 1.56
CLK3-207ENST00000562389 IQGAP1P46940 1657 aa24.78■■□□□ 1.56
CLK3-207ENST00000562389 KIF1BO60333 1816 aa24.78■■□□□ 1.56
CLK3-207ENST00000562389 NPHP4O75161 1426 aaPredicted RBP24.77■■□□□ 1.56
CLK3-207ENST00000562389 FOXD1Q16676 465 aa24.76■■□□□ 1.55
CLK3-207ENST00000562389 ZFYVE9O95405 1425 aa24.75■■□□□ 1.55
CLK3-207ENST00000562389 CHGAP10645 457 aaKnown RBP24.74■■□□□ 1.55
CLK3-207ENST00000562389 LTKP29376 864 aa24.74■■□□□ 1.55
CLK3-207ENST00000562389 TXNDC2Q86VQ3 553 aa24.74■■□□□ 1.55
CLK3-207ENST00000562389 EID1Q9Y6B2 187 aa24.74■■□□□ 1.55
CLK3-207ENST00000562389 RIMS2Q9UQ26 1411 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms