RNA–Protein interactions for RNA: ENST00000561395.5

TPM1-231, Transcript of tropomyosin 1, human

TSL 5

Gene TPM1, Length 673 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-231	ENST00000561395	CPS1	P31327	1500 aa		11.4	□□□□□ -0.58
TPM1-231	ENST00000561395	NEURL4	Q96JN8	1562 aa		11.4	□□□□□ -0.58
TPM1-231	ENST00000561395	DNMT1	P26358	1616 aa	Known RBP	11.39	□□□□□ -0.59
TPM1-231	ENST00000561395	ALK	Q9UM73	1620 aa		11.39	□□□□□ -0.59
TPM1-231	ENST00000561395	PIP4K2B	P78356	416 aa		11.39	□□□□□ -0.59
TPM1-231	ENST00000561395	TRO	Q12816	1431 aa	Predicted RBP	11.39	□□□□□ -0.59
TPM1-231	ENST00000561395	PKD2	Q13563	968 aa		11.39	□□□□□ -0.59
TPM1-231	ENST00000561395	SAMD9L	Q8IVG5	1584 aa		11.38	□□□□□ -0.59
TPM1-231	ENST00000561395	FGD6	Q6ZV73	1430 aa		11.38	□□□□□ -0.59
TPM1-231	ENST00000561395	ZMYM3	Q14202	1370 aa		11.38	□□□□□ -0.59
TPM1-231	ENST00000561395	PLXNC1	O60486	1568 aa		11.37	□□□□□ -0.59
TPM1-231	ENST00000561395	MYOM3	Q5VTT5	1437 aa		11.37	□□□□□ -0.59
TPM1-231	ENST00000561395	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.36	□□□□□ -0.59
TPM1-231	ENST00000561395	PTPRK	Q15262	1439 aa		11.35	□□□□□ -0.59
TPM1-231	ENST00000561395	TOM1	O60784	492 aa		11.35	□□□□□ -0.59
TPM1-231	ENST00000561395	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.35	□□□□□ -0.59
TPM1-231	ENST00000561395	INO80	Q9ULG1	1556 aa	Predicted RBP	11.35	□□□□□ -0.59
TPM1-231	ENST00000561395	ADGB	Q8N7X0	1667 aa		11.35	□□□□□ -0.59
TPM1-231	ENST00000561395	STRCP1	A6NGW2	1772 aa		11.35	□□□□□ -0.59
TPM1-231	ENST00000561395	RNF17	Q9BXT8	1623 aa	Known RBP	11.35	□□□□□ -0.59
TPM1-231	ENST00000561395	PTPN23	Q9H3S7	1636 aa		11.35	□□□□□ -0.59
TPM1-231	ENST00000561395	VWDE	Q8N2E2	1590 aa		11.34	□□□□□ -0.59
TPM1-231	ENST00000561395	SHANK2	Q9UPX8	1470 aa		11.34	□□□□□ -0.59
TPM1-231	ENST00000561395	HRC	P23327	699 aa		11.34	□□□□□ -0.59
TPM1-231	ENST00000561395	ATP7A	Q04656	1500 aa		11.34	□□□□□ -0.59
TPM1-231	ENST00000561395	SYCP2	Q9BX26	1530 aa		11.34	□□□□□ -0.59
TPM1-231	ENST00000561395	A2ML1	A8K2U0	1454 aa		11.33	□□□□□ -0.6
TPM1-231	ENST00000561395	SETD1A	O15047	1707 aa	Known RBP	11.32	□□□□□ -0.6
TPM1-231	ENST00000561395	SYNM	O15061	1565 aa		11.32	□□□□□ -0.6
TPM1-231	ENST00000561395	IQGAP1	P46940	1657 aa		11.31	□□□□□ -0.6
TPM1-231	ENST00000561395	MIA2	Q96PC5	1412 aa		11.31	□□□□□ -0.6
TPM1-231	ENST00000561395	DEPDC5	O75140	1603 aa		11.3	□□□□□ -0.6
TPM1-231	ENST00000561395	XIRP1	Q702N8	1843 aa	Known RBP	11.29	□□□□□ -0.6
TPM1-231	ENST00000561395	A2M	P01023	1474 aa		11.28	□□□□□ -0.6
TPM1-231	ENST00000561395	FAM50A	Q14320	339 aa	Known RBP	11.28	□□□□□ -0.6
TPM1-231	ENST00000561395	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.28	□□□□□ -0.6
TPM1-231	ENST00000561395	GPATCH8	Q9UKJ3	1502 aa	Known RBP	11.26	□□□□□ -0.61
TPM1-231	ENST00000561395	RGS17	Q9UGC6	210 aa	Predicted RBP	11.25	□□□□□ -0.61
TPM1-231	ENST00000561395	SPAG9	O60271	1321 aa	Known RBP	11.25	□□□□□ -0.61
TPM1-231	ENST00000561395	ZC3H13	Q5T200	1668 aa	Known RBP	11.24	□□□□□ -0.61
TPM1-231	ENST00000561395	ITGAE	P38570	1179 aa		11.24	□□□□□ -0.61
TPM1-231	ENST00000561395	CAMSAP2	Q08AD1	1489 aa		11.24	□□□□□ -0.61
TPM1-231	ENST00000561395	LRRC7	Q96NW7	1537 aa		11.24	□□□□□ -0.61
TPM1-231	ENST00000561395	GGT6	Q6P531	493 aa		11.23	□□□□□ -0.61
TPM1-231	ENST00000561395	MED14	O60244	1454 aa		11.23	□□□□□ -0.61
TPM1-231	ENST00000561395	CROCC2	H7BZ55	1655 aa		11.22	□□□□□ -0.61
TPM1-231	ENST00000561395	NPHP4	O75161	1426 aa	Predicted RBP	11.22	□□□□□ -0.61
TPM1-231	ENST00000561395	ZEB1	P37275	1124 aa	Predicted RBP	11.22	□□□□□ -0.61
TPM1-231	ENST00000561395	GCC2	Q8IWJ2	1684 aa		11.22	□□□□□ -0.61
TPM1-231	ENST00000561395	TNR	Q92752	1358 aa		11.22	□□□□□ -0.61
TPM1-231	ENST00000561395	KDM5D	Q9BY66	1539 aa		11.22	□□□□□ -0.61
TPM1-231	ENST00000561395	UGGT1	Q9NYU2	1555 aa		11.22	□□□□□ -0.61
TPM1-231	ENST00000561395	PZP	P20742	1482 aa		11.21	□□□□□ -0.61
TPM1-231	ENST00000561395	SETD5	Q9C0A6	1442 aa		11.21	□□□□□ -0.61
TPM1-231	ENST00000561395	CCER1	Q8TC90	406 aa	Predicted RBP	11.21	□□□□□ -0.61
TPM1-231	ENST00000561395	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.21	□□□□□ -0.61
TPM1-231	ENST00000561395	FAM135A	Q9P2D6	1515 aa		11.2	□□□□□ -0.62
TPM1-231	ENST00000561395	PLEKHH2	Q8IVE3	1493 aa		11.2	□□□□□ -0.62
TPM1-231	ENST00000561395	CFAP65	Q6ZU64	1925 aa	Known RBP	11.2	□□□□□ -0.62
TPM1-231	ENST00000561395	RNF216	Q9NWF9	866 aa	Predicted RBP	11.2	□□□□□ -0.62
TPM1-231	ENST00000561395	HFM1	A2PYH4	1435 aa		11.19	□□□□□ -0.62
TPM1-231	ENST00000561395	DAPK1	P53355	1430 aa		11.19	□□□□□ -0.62
TPM1-231	ENST00000561395	RAB3GAP2	Q9H2M9	1393 aa		11.19	□□□□□ -0.62
TPM1-231	ENST00000561395	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
TPM1-231	ENST00000561395	NLRP1	Q9C000	1473 aa		11.19	□□□□□ -0.62
TPM1-231	ENST00000561395	KIAA1107	Q9UPP5	1409 aa		11.18	□□□□□ -0.62
TPM1-231	ENST00000561395	ANKLE2	Q86XL3	938 aa		11.18	□□□□□ -0.62
TPM1-231	ENST00000561395	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.18	□□□□□ -0.62
TPM1-231	ENST00000561395	UBR1	Q8IWV7	1749 aa		11.18	□□□□□ -0.62
TPM1-231	ENST00000561395	ROBO1	Q9Y6N7	1651 aa		11.17	□□□□□ -0.62
TPM1-231	ENST00000561395	ABCC5	O15440	1437 aa		11.17	□□□□□ -0.62
TPM1-231	ENST00000561395	NAIP	Q13075	1403 aa		11.17	□□□□□ -0.62
TPM1-231	ENST00000561395	ARHGEF5	Q12774	1597 aa		11.16	□□□□□ -0.62
TPM1-231	ENST00000561395	ZNF644	Q9H582	1327 aa	Predicted RBP	11.16	□□□□□ -0.62
TPM1-231	ENST00000561395	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.16	□□□□□ -0.62
TPM1-231	ENST00000561395	POTEA	Q6S8J7	498 aa		11.16	□□□□□ -0.62
TPM1-231	ENST00000561395	DHX57	Q6P158	1386 aa	Known RBP	11.16	□□□□□ -0.62
TPM1-231	ENST00000561395	ROCK1	Q13464	1354 aa		11.15	□□□□□ -0.63
TPM1-231	ENST00000561395	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.14	□□□□□ -0.63
TPM1-231	ENST00000561395	ADGRL2	O95490	1459 aa		11.13	□□□□□ -0.63
TPM1-231	ENST00000561395	PHLPP1	O60346	1717 aa		11.13	□□□□□ -0.63
TPM1-231	ENST00000561395	CEP152	O94986	1710 aa		11.12	□□□□□ -0.63
TPM1-231	ENST00000561395	MBD5	Q9P267	1494 aa		11.12	□□□□□ -0.63
TPM1-231	ENST00000561395	CLSPN	Q9HAW4	1339 aa		11.11	□□□□□ -0.63
TPM1-231	ENST00000561395	HOXD11	P31277	338 aa	Predicted RBP	11.11	□□□□□ -0.63
TPM1-231	ENST00000561395	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.1	□□□□□ -0.63
TPM1-231	ENST00000561395	DHX29	Q7Z478	1369 aa	Known RBP	11.1	□□□□□ -0.63
TPM1-231	ENST00000561395	CCDC141	Q6ZP82	1450 aa		11.1	□□□□□ -0.63
TPM1-231	ENST00000561395	MAST1	Q9Y2H9	1570 aa		11.1	□□□□□ -0.63
TPM1-231	ENST00000561395	CHIC2	Q9UKJ5	165 aa		11.09	□□□□□ -0.63
TPM1-231	ENST00000561395	FAM135B	Q49AJ0	1406 aa		11.09	□□□□□ -0.63
TPM1-231	ENST00000561395	SCAF11	Q99590	1463 aa	Known RBP	11.08	□□□□□ -0.64
TPM1-231	ENST00000561395	KIF3B	O15066	747 aa		11.08	□□□□□ -0.64
TPM1-231	ENST00000561395	RRP7BP	Q9NSQ0	103 aa		11.07	□□□□□ -0.64
TPM1-231	ENST00000561395	ABCC3	O15438	1527 aa		11.07	□□□□□ -0.64
TPM1-231	ENST00000561395	WASHC2C	Q9Y4E1	1318 aa		11.07	□□□□□ -0.64
TPM1-231	ENST00000561395	ERVK-7	P63135	1459 aa		11.06	□□□□□ -0.64
TPM1-231	ENST00000561395	EIF2AK4	Q9P2K8	1649 aa	Known RBP	11.06	□□□□□ -0.64
TPM1-231	ENST00000561395	ANKRD30A	Q9BXX3	1397 aa		11.05	□□□□□ -0.64
TPM1-231	ENST00000561395	SLIT1	O75093	1534 aa		11.05	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms