RNA–Protein interactions for RNA: ENST00000560483.1

LRRC28-219, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 535 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-219ENST00000560483 SCAPERQ9BY12 1400 aa12.48□□□□□ -0.41
LRRC28-219ENST00000560483 ARID4BQ4LE39 1312 aaPredicted RBP12.48□□□□□ -0.41
LRRC28-219ENST00000560483 SLC39A7Q92504 469 aa12.48□□□□□ -0.41
LRRC28-219ENST00000560483 KIF12Q96FN5 646 aa12.48□□□□□ -0.41
LRRC28-219ENST00000560483 BMP2KQ9NSY1 1161 aaPredicted RBP12.48□□□□□ -0.41
LRRC28-219ENST00000560483 CFDP1Q9UEE9 299 aaPredicted RBP12.48□□□□□ -0.41
LRRC28-219ENST00000560483 TIAM1Q13009 1591 aa12.47□□□□□ -0.41
LRRC28-219ENST00000560483 RASEFQ8IZ41 740 aa12.47□□□□□ -0.41
LRRC28-219ENST00000560483 SUPT6HQ7KZ85 1726 aaKnown RBP12.47□□□□□ -0.41
LRRC28-219ENST00000560483 CDC42BPAQ5VT25 1732 aa12.46□□□□□ -0.41
LRRC28-219ENST00000560483 CDC42BPBQ9Y5S2 1711 aa12.46□□□□□ -0.41
LRRC28-219ENST00000560483 PREX2Q70Z35 1606 aa12.46□□□□□ -0.41
LRRC28-219ENST00000560483 C7P10643 843 aa12.45□□□□□ -0.42
LRRC28-219ENST00000560483 ITSN2Q9NZM3 1697 aa12.43□□□□□ -0.42
LRRC28-219ENST00000560483 MAP3K13O43283 966 aa12.43□□□□□ -0.42
LRRC28-219ENST00000560483 NCOA2Q15596 1464 aa12.42□□□□□ -0.42
LRRC28-219ENST00000560483 LRRC9Q6ZRR7 1453 aa12.42□□□□□ -0.42
LRRC28-219ENST00000560483 KANK4Q5T7N3 995 aaPredicted RBP12.42□□□□□ -0.42
LRRC28-219ENST00000560483 RICTORQ6R327 1708 aa12.42□□□□□ -0.42
LRRC28-219ENST00000560483 GPATCH8Q9UKJ3 1502 aaKnown RBP12.42□□□□□ -0.42
LRRC28-219ENST00000560483 HNRNPMP52272 730 aaKnown RBP eCLIP12.41□□□□□ -0.42
LRRC28-219ENST00000560483 POGZQ7Z3K3 1410 aa12.41□□□□□ -0.42
LRRC28-219ENST00000560483 AFAP1Q8N556 730 aa12.41□□□□□ -0.42
LRRC28-219ENST00000560483 ZNF518AQ6AHZ1 1483 aa12.4□□□□□ -0.42
LRRC28-219ENST00000560483 FRMPD1Q5SYB0 1578 aa12.4□□□□□ -0.42
LRRC28-219ENST00000560483 ZFYVE16Q7Z3T8 1539 aa12.39□□□□□ -0.43
LRRC28-219ENST00000560483 MLECQ14165 292 aa12.39□□□□□ -0.43
LRRC28-219ENST00000560483 ABCC1P33527 1531 aa12.38□□□□□ -0.43
LRRC28-219ENST00000560483 SYCP2Q9BX26 1530 aa12.38□□□□□ -0.43
LRRC28-219ENST00000560483 PPARGC1BQ86YN6 1023 aaKnown RBP12.38□□□□□ -0.43
LRRC28-219ENST00000560483 MAP3K1Q13233 1512 aa12.37□□□□□ -0.43
LRRC28-219ENST00000560483 COLQQ9Y215 455 aaPredicted RBP12.37□□□□□ -0.43
LRRC28-219ENST00000560483 PLEKHH2Q8IVE3 1493 aa12.37□□□□□ -0.43
LRRC28-219ENST00000560483 SAMD9LQ8IVG5 1584 aa12.37□□□□□ -0.43
LRRC28-219ENST00000560483 ZNF644Q9H582 1327 aaPredicted RBP12.37□□□□□ -0.43
LRRC28-219ENST00000560483 ARHGEF40Q8TER5 1519 aa12.36□□□□□ -0.43
LRRC28-219ENST00000560483 YEATS2Q9ULM3 1422 aa12.36□□□□□ -0.43
LRRC28-219ENST00000560483 TRAPPC8Q9Y2L5 1435 aa12.36□□□□□ -0.43
LRRC28-219ENST00000560483 SPAG9O60271 1321 aaKnown RBP12.36□□□□□ -0.43
LRRC28-219ENST00000560483 ZMYM4Q5VZL5 1548 aa12.35□□□□□ -0.43
LRRC28-219ENST00000560483 HECW2Q9P2P5 1572 aa12.35□□□□□ -0.43
LRRC28-219ENST00000560483 MAGI2Q86UL8 1455 aa12.34□□□□□ -0.43
LRRC28-219ENST00000560483 KDM4FA0A1W2PPD8 638 aa12.34□□□□□ -0.43
LRRC28-219ENST00000560483 ARHGEF12Q9NZN5 1544 aa12.33□□□□□ -0.44
LRRC28-219ENST00000560483 CAMSAP2Q08AD1 1489 aa12.33□□□□□ -0.44
LRRC28-219ENST00000560483 TSPY4P0CV99 314 aa12.32□□□□□ -0.44
LRRC28-219ENST00000560483 TSPY10P0CW01 314 aa12.32□□□□□ -0.44
LRRC28-219ENST00000560483 ESF1Q9H501 851 aaKnown RBP12.32□□□□□ -0.44
LRRC28-219ENST00000560483 ATP10AO60312 1499 aa12.32□□□□□ -0.44
LRRC28-219ENST00000560483 MYOM3Q5VTT5 1437 aa12.31□□□□□ -0.44
LRRC28-219ENST00000560483 C9orf84Q5VXU9 1444 aa12.31□□□□□ -0.44
LRRC28-219ENST00000560483 KIAA1107Q9UPP5 1409 aa12.31□□□□□ -0.44
LRRC28-219ENST00000560483 TTLL13PA6NNM8 815 aa12.31□□□□□ -0.44
LRRC28-219ENST00000560483 FAM50AQ14320 339 aaKnown RBP12.31□□□□□ -0.44
LRRC28-219ENST00000560483 MIER1Q8N108 512 aa12.31□□□□□ -0.44
LRRC28-219ENST00000560483 FAM163AQ96GL9 167 aaPredicted RBP12.31□□□□□ -0.44
LRRC28-219ENST00000560483 KDM5CP41229 1560 aa12.3□□□□□ -0.44
LRRC28-219ENST00000560483 CCDC141Q6ZP82 1450 aa12.28□□□□□ -0.44
LRRC28-219ENST00000560483 MLH3Q9UHC1 1453 aa12.28□□□□□ -0.44
LRRC28-219ENST00000560483 ATP7AQ04656 1500 aa12.28□□□□□ -0.44
LRRC28-219ENST00000560483 TIE1P35590 1138 aa12.28□□□□□ -0.44
LRRC28-219ENST00000560483 RSPH4AQ5TD94 716 aa12.28□□□□□ -0.44
LRRC28-219ENST00000560483 ABCA6Q8N139 1617 aa12.28□□□□□ -0.44
LRRC28-219ENST00000560483 DIP2CQ9Y2E4 1556 aa12.27□□□□□ -0.44
LRRC28-219ENST00000560483 MAMSTRQ6ZN01 415 aa12.27□□□□□ -0.45
LRRC28-219ENST00000560483 BCORL1Q5H9F3 1711 aa12.27□□□□□ -0.45
LRRC28-219ENST00000560483 KIDINS220Q9ULH0 1771 aa12.27□□□□□ -0.45
LRRC28-219ENST00000560483 MIA2Q96PC5 1412 aa12.27□□□□□ -0.45
LRRC28-219ENST00000560483 PTPN23Q9H3S7 1636 aa12.26□□□□□ -0.45
LRRC28-219ENST00000560483 SCUBE2Q9NQ36 999 aa12.26□□□□□ -0.45
LRRC28-219ENST00000560483 MADDQ8WXG6 1647 aa12.25□□□□□ -0.45
LRRC28-219ENST00000560483 RIMS1Q86UR5 1692 aaKnown RBP12.25□□□□□ -0.45
LRRC28-219ENST00000560483 FER1L4A9Z1Z3 1794 aa12.24□□□□□ -0.45
LRRC28-219ENST00000560483 ITGAEP38570 1179 aa12.24□□□□□ -0.45
LRRC28-219ENST00000560483 GGT6Q6P531 493 aa12.24□□□□□ -0.45
LRRC28-219ENST00000560483 FGD6Q6ZV73 1430 aa12.24□□□□□ -0.45
LRRC28-219ENST00000560483 MBD5Q9P267 1494 aa12.24□□□□□ -0.45
LRRC28-219ENST00000560483 NUBP1P53384 320 aa12.23□□□□□ -0.45
LRRC28-219ENST00000560483 CHIC2Q9UKJ5 165 aa12.23□□□□□ -0.45
LRRC28-219ENST00000560483 SIGLEC1Q9BZZ2 1709 aa12.23□□□□□ -0.45
LRRC28-219ENST00000560483 INO80Q9ULG1 1556 aaPredicted RBP12.22□□□□□ -0.45
LRRC28-219ENST00000560483 A2MP01023 1474 aa12.22□□□□□ -0.45
LRRC28-219ENST00000560483 TRIM35Q9UPQ4 493 aa12.22□□□□□ -0.45
LRRC28-219ENST00000560483 ADAMTSL3P82987 1691 aa12.22□□□□□ -0.45
LRRC28-219ENST00000560483 ADGBQ8N7X0 1667 aa12.22□□□□□ -0.45
LRRC28-219ENST00000560483 ARHGEF5Q12774 1597 aa12.22□□□□□ -0.45
LRRC28-219ENST00000560483 KIF3BO15066 747 aa12.2□□□□□ -0.46
LRRC28-219ENST00000560483 IFNL1Q8IU54 200 aa12.2□□□□□ -0.46
LRRC28-219ENST00000560483 PTPRMP28827 1452 aa12.2□□□□□ -0.46
LRRC28-219ENST00000560483 RTEL1-TNFRSF6BF6WH68 1400 aa12.2□□□□□ -0.46
LRRC28-219ENST00000560483 RRP7BPQ9NSQ0 103 aa12.19□□□□□ -0.46
LRRC28-219ENST00000560483 PCDHB13Q9Y5F0 798 aa12.19□□□□□ -0.46
LRRC28-219ENST00000560483 REREQ9P2R6 1566 aa12.18□□□□□ -0.46
LRRC28-219ENST00000560483 CEBPAP49715 358 aaPredicted RBP12.17□□□□□ -0.46
LRRC28-219ENST00000560483 PLCD3Q8N3E9 789 aa12.17□□□□□ -0.46
LRRC28-219ENST00000560483 DAPK1P53355 1430 aa12.17□□□□□ -0.46
LRRC28-219ENST00000560483 DHX29Q7Z478 1369 aaKnown RBP12.17□□□□□ -0.46
LRRC28-219ENST00000560483 DNMT1P26358 1616 aaKnown RBP12.16□□□□□ -0.46
LRRC28-219ENST00000560483 AGLP35573 1532 aa12.16□□□□□ -0.46
LRRC28-219ENST00000560483 CROCC2H7BZ55 1655 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms