RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 PRDM15P57071 1507 aaPredicted RBP32.8■■■□□ 2.84
SNX1-206ENST00000559389 NAIPQ13075 1403 aa32.79■■■□□ 2.84
SNX1-206ENST00000559389 FAM135AQ9P2D6 1515 aa32.79■■■□□ 2.84
SNX1-206ENST00000559389 KDM4FA0A1W2PPD8 638 aa32.79■■■□□ 2.84
SNX1-206ENST00000559389 RIMS1Q86UR5 1692 aaKnown RBP32.78■■■□□ 2.84
SNX1-206ENST00000559389 UNC13BO14795 1591 aa32.75■■■□□ 2.83
SNX1-206ENST00000559389 KDM5DQ9BY66 1539 aa32.73■■■□□ 2.83
SNX1-206ENST00000559389 ZC3H13Q5T200 1668 aaKnown RBP32.72■■■□□ 2.83
SNX1-206ENST00000559389 GGT6Q6P531 493 aa32.72■■■□□ 2.83
SNX1-206ENST00000559389 MROH2AA6NES4 1674 aa32.71■■■□□ 2.83
SNX1-206ENST00000559389 CLTCQ00610 1675 aaKnown RBP32.71■■■□□ 2.83
SNX1-206ENST00000559389 CNTLNQ9NXG0 1405 aa32.69■■■□□ 2.82
SNX1-206ENST00000559389 VWDEQ8N2E2 1590 aa32.68■■■□□ 2.82
SNX1-206ENST00000559389 ABCC3O15438 1527 aa32.67■■■□□ 2.82
SNX1-206ENST00000559389 PPP6R1Q9UPN7 881 aa32.67■■■□□ 2.82
SNX1-206ENST00000559389 PTPRMP28827 1452 aa32.66■■■□□ 2.82
SNX1-206ENST00000559389 CEP152O94986 1710 aa32.65■■■□□ 2.82
SNX1-206ENST00000559389 C3P01024 1663 aa32.61■■■□□ 2.81
SNX1-206ENST00000559389 CAMSAP1Q5T5Y3 1602 aa32.59■■■□□ 2.81
SNX1-206ENST00000559389 ESF1Q9H501 851 aaKnown RBP32.59■■■□□ 2.81
SNX1-206ENST00000559389 LMTK2Q8IWU2 1503 aa32.59■■■□□ 2.81
SNX1-206ENST00000559389 IQGAP3Q86VI3 1631 aa32.59■■■□□ 2.81
SNX1-206ENST00000559389 KANK1Q14678 1352 aa32.58■■■□□ 2.81
SNX1-206ENST00000559389 TRIM26Q12899 539 aaPredicted RBP32.56■■■□□ 2.8
SNX1-206ENST00000559389 SETD5Q9C0A6 1442 aa32.56■■■□□ 2.8
SNX1-206ENST00000559389 WASHC2CQ9Y4E1 1318 aa32.55■■■□□ 2.8
SNX1-206ENST00000559389 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.54■■■□□ 2.89e-7■□□□□ 9.9
SNX1-206ENST00000559389 EFCAB6Q5THR3 1501 aa32.51■■■□□ 2.8
SNX1-206ENST00000559389 TET3O43151 1660 aa32.51■■■□□ 2.79
SNX1-206ENST00000559389 ZMYM3Q14202 1370 aa32.51■■■□□ 2.79
SNX1-206ENST00000559389 PZPP20742 1482 aa32.49■■■□□ 2.79
SNX1-206ENST00000559389 RAB3GAP2Q9H2M9 1393 aa32.47■■■□□ 2.79
SNX1-206ENST00000559389 NUP155O75694 1391 aa32.46■■■□□ 2.79
SNX1-206ENST00000559389 ARHGAP31Q2M1Z3 1444 aa32.45■■■□□ 2.79
SNX1-206ENST00000559389 CEBPAP49715 358 aaPredicted RBP32.43■■■□□ 2.78
SNX1-206ENST00000559389 NPATQ14207 1427 aa32.43■■■□□ 2.78
SNX1-206ENST00000559389 SPATA31D1Q6ZQQ2 1576 aa32.39■■■□□ 2.78
SNX1-206ENST00000559389 E9PCH4 1651 aa32.39■■■□□ 2.78
SNX1-206ENST00000559389 PREX1Q8TCU6 1659 aa32.39■■■□□ 2.78
SNX1-206ENST00000559389 RPRD2Q5VT52 1461 aaKnown RBP32.38■■■□□ 2.77
SNX1-206ENST00000559389 ERVK-7P63135 1459 aa32.37■■■□□ 2.77
SNX1-206ENST00000559389 PLPPR3Q6T4P5 718 aa32.37■■■□□ 2.77
SNX1-206ENST00000559389 ACIN1Q9UKV3 1341 aaKnown RBP32.35■■■□□ 2.77
SNX1-206ENST00000559389 TRIM52Q96A61 297 aa32.34■■■□□ 2.77
SNX1-206ENST00000559389 MYO3AQ8NEV4 1616 aa32.33■■■□□ 2.77
SNX1-206ENST00000559389 HRCP23327 699 aa32.3■■■□□ 2.76
SNX1-206ENST00000559389 FBXO31Q5XUX0 539 aaPredicted RBP32.28■■■□□ 2.76
SNX1-206ENST00000559389 NOS1P29475 1434 aa32.27■■■□□ 2.76
SNX1-206ENST00000559389 AEBP2Q6ZN18 517 aaPredicted RBP32.27■■■□□ 2.76
SNX1-206ENST00000559389 TNRQ92752 1358 aa32.27■■■□□ 2.76
SNX1-206ENST00000559389 SYNMO15061 1565 aa32.26■■■□□ 2.75
SNX1-206ENST00000559389 ZNF142P52746 1687 aaPredicted RBP32.25■■■□□ 2.75
SNX1-206ENST00000559389 SETD1BQ9UPS6 1966 aaKnown RBP32.23■■■□□ 2.75
SNX1-206ENST00000559389 CFAP65Q6ZU64 1925 aaKnown RBP32.23■■■□□ 2.75
SNX1-206ENST00000559389 SPHKAPQ2M3C7 1700 aa32.23■■■□□ 2.75
SNX1-206ENST00000559389 SLC4A1APQ9BWU0 796 aaKnown RBP32.22■■■□□ 2.75
SNX1-206ENST00000559389 UHRF1BP1Q6BDS2 1440 aa32.22■■■□□ 2.75
SNX1-206ENST00000559389 LMTK3Q96Q04 1460 aa32.22■■■□□ 2.75
SNX1-206ENST00000559389 NLRP1Q9C000 1473 aa32.2■■■□□ 2.75
SNX1-206ENST00000559389 CEP170BQ9Y4F5 1589 aaPredicted RBP32.19■■■□□ 2.74
SNX1-206ENST00000559389 MPHOSPH9Q99550 1183 aa32.17■■■□□ 2.74
SNX1-206ENST00000559389 PIK3C2BO00750 1634 aa32.16■■■□□ 2.74
SNX1-206ENST00000559389 PKD2Q13563 968 aa32.16■■■□□ 2.74
SNX1-206ENST00000559389 PTPRTO14522 1441 aa32.16■■■□□ 2.74
SNX1-206ENST00000559389 TRPM2O94759 1503 aa32.16■■■□□ 2.74
SNX1-206ENST00000559389 A2ML1A8K2U0 1454 aa32.15■■■□□ 2.74
SNX1-206ENST00000559389 PCGF6Q9BYE7 350 aa32.13■■■□□ 2.73
SNX1-206ENST00000559389 UGGT1Q9NYU2 1555 aa32.11■■■□□ 2.73
SNX1-206ENST00000559389 PLA2R1Q13018 1463 aa32.1■■■□□ 2.73
SNX1-206ENST00000559389 KDM5AP29375 1690 aaKnown RBP32.07■■■□□ 2.72
SNX1-206ENST00000559389 UBR1Q8IWV7 1749 aa32.06■■■□□ 2.72
SNX1-206ENST00000559389 CLTCL1P53675 1640 aa32.06■■■□□ 2.72
SNX1-206ENST00000559389 ADGRB3O60242 1522 aa32.05■■■□□ 2.72
SNX1-206ENST00000559389 FOXD1Q16676 465 aa32.04■■■□□ 2.72
SNX1-206ENST00000559389 SLC52A1Q9NWF4 448 aa32.02■■■□□ 2.72
SNX1-206ENST00000559389 IDI1Q13907 227 aa31.99■■■□□ 2.71
SNX1-206ENST00000559389 TMEM131LA2VDJ0 1609 aa31.99■■■□□ 2.71
SNX1-206ENST00000559389 HSPA2P54652 639 aa31.94■■■□□ 2.7
SNX1-206ENST00000559389 DHX57Q6P158 1386 aaKnown RBP31.94■■■□□ 2.7
SNX1-206ENST00000559389 MYO5BQ9ULV0 1848 aa31.93■■■□□ 2.7
SNX1-206ENST00000559389 CCDC144AA2RUR9 1427 aa31.92■■■□□ 2.7
SNX1-206ENST00000559389 ANKRD30BQ9BXX2 1392 aa31.92■■■□□ 2.7
SNX1-206ENST00000559389 KIF1BO60333 1816 aa31.91■■■□□ 2.7
SNX1-206ENST00000559389 SLIT1O75093 1534 aa31.9■■■□□ 2.7
SNX1-206ENST00000559389 ARHGAP23Q9P227 1491 aa31.89■■■□□ 2.7
SNX1-206ENST00000559389 THEMISQ8N1K5 641 aaPredicted RBP31.87■■■□□ 2.69
SNX1-206ENST00000559389 POLR1AO95602 1720 aaPredicted RBP31.86■■■□□ 2.69
SNX1-206ENST00000559389 STAG3Q9UJ98 1225 aa31.85■■■□□ 2.69
SNX1-206ENST00000559389 STRCQ7RTU9 1775 aa31.85■■■□□ 2.69
SNX1-206ENST00000559389 NEURL4Q96JN8 1562 aa31.84■■■□□ 2.69
SNX1-206ENST00000559389 TMEM2Q9UHN6 1383 aa31.82■■■□□ 2.69
SNX1-206ENST00000559389 ZFYVE9O95405 1425 aa31.8■■■□□ 2.68
SNX1-206ENST00000559389 CHGAP10645 457 aaKnown RBP31.79■■■□□ 2.68
SNX1-206ENST00000559389 SPATA31E1Q6ZUB1 1445 aa31.79■■■□□ 2.68
SNX1-206ENST00000559389 SCAF11Q99590 1463 aaKnown RBP31.77■■■□□ 2.68
SNX1-206ENST00000559389 NEXMIFQ5QGS0 1516 aa31.75■■■□□ 2.67
SNX1-206ENST00000559389 RIMS2Q9UQ26 1411 aa31.75■■■□□ 2.67
SNX1-206ENST00000559389 MED14O60244 1454 aa31.72■■■□□ 2.67
SNX1-206ENST00000559389 IFT172Q9UG01 1749 aa31.7■■■□□ 2.67
SNX1-206ENST00000559389 ANKLE2Q86XL3 938 aa31.7■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms