RNA–Protein interactions for RNA: ENST00000558500.5

LRRC28-207, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-207ENST00000558500 CASKIN1Q8WXD9 1431 aa11.17□□□□□ -0.62
LRRC28-207ENST00000558500 ATP7AQ04656 1500 aa11.16□□□□□ -0.62
LRRC28-207ENST00000558500 GPATCH8Q9UKJ3 1502 aaKnown RBP11.16□□□□□ -0.62
LRRC28-207ENST00000558500 KIAA1107Q9UPP5 1409 aa11.16□□□□□ -0.62
LRRC28-207ENST00000558500 DNMT1P26358 1616 aaKnown RBP11.15□□□□□ -0.62
LRRC28-207ENST00000558500 LRRIQ1Q96JM4 1722 aa11.15□□□□□ -0.63
LRRC28-207ENST00000558500 ANKLE2Q86XL3 938 aa11.14□□□□□ -0.63
LRRC28-207ENST00000558500 SLC4A1APQ9BWU0 796 aaKnown RBP11.14□□□□□ -0.63
LRRC28-207ENST00000558500 NEURL4Q96JN8 1562 aa11.14□□□□□ -0.63
LRRC28-207ENST00000558500 SUPT6HQ7KZ85 1726 aaKnown RBP11.14□□□□□ -0.63
LRRC28-207ENST00000558500 TNRQ92752 1358 aa11.14□□□□□ -0.63
LRRC28-207ENST00000558500 PLEKHH2Q8IVE3 1493 aa11.13□□□□□ -0.63
LRRC28-207ENST00000558500 INO80Q9ULG1 1556 aaPredicted RBP11.13□□□□□ -0.63
LRRC28-207ENST00000558500 FBXO31Q5XUX0 539 aaPredicted RBP11.13□□□□□ -0.63
LRRC28-207ENST00000558500 CFDP1Q9UEE9 299 aaPredicted RBP11.13□□□□□ -0.63
LRRC28-207ENST00000558500 ALKQ9UM73 1620 aa11.13□□□□□ -0.63
LRRC28-207ENST00000558500 CDC42BPAQ5VT25 1732 aa11.12□□□□□ -0.63
LRRC28-207ENST00000558500 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.12□□□□□ -0.63
LRRC28-207ENST00000558500 VWDEQ8N2E2 1590 aa11.11□□□□□ -0.63
LRRC28-207ENST00000558500 THEMISQ8N1K5 641 aaPredicted RBP11.11□□□□□ -0.63
LRRC28-207ENST00000558500 RGS17Q9UGC6 210 aaPredicted RBP11.11□□□□□ -0.63
LRRC28-207ENST00000558500 NPHP4O75161 1426 aaPredicted RBP11.1□□□□□ -0.63
LRRC28-207ENST00000558500 MED14O60244 1454 aa11.09□□□□□ -0.63
LRRC28-207ENST00000558500 PZPP20742 1482 aa11.09□□□□□ -0.63
LRRC28-207ENST00000558500 DHX29Q7Z478 1369 aaKnown RBP11.09□□□□□ -0.63
LRRC28-207ENST00000558500 CCNB3Q8WWL7 1395 aa11.09□□□□□ -0.63
LRRC28-207ENST00000558500 FYCO1Q9BQS8 1478 aa11.08□□□□□ -0.64
LRRC28-207ENST00000558500 RTEL1-TNFRSF6BF6WH68 1400 aa11.08□□□□□ -0.64
LRRC28-207ENST00000558500 MIA2Q96PC5 1412 aa11.08□□□□□ -0.64
LRRC28-207ENST00000558500 LRRC7Q96NW7 1537 aa11.07□□□□□ -0.64
LRRC28-207ENST00000558500 ZNF644Q9H582 1327 aaPredicted RBP11.07□□□□□ -0.64
LRRC28-207ENST00000558500 WASHC2CQ9Y4E1 1318 aa11.07□□□□□ -0.64
LRRC28-207ENST00000558500 POLR1AO95602 1720 aaPredicted RBP11.06□□□□□ -0.64
LRRC28-207ENST00000558500 NLRP1Q9C000 1473 aa11.06□□□□□ -0.64
LRRC28-207ENST00000558500 MBD5Q9P267 1494 aa11.06□□□□□ -0.64
LRRC28-207ENST00000558500 KIF3BO15066 747 aa11.06□□□□□ -0.64
LRRC28-207ENST00000558500 KDM5DQ9BY66 1539 aa11.05□□□□□ -0.64
LRRC28-207ENST00000558500 FAM135AQ9P2D6 1515 aa11.05□□□□□ -0.64
LRRC28-207ENST00000558500 UGGT1Q9NYU2 1555 aa11.05□□□□□ -0.64
LRRC28-207ENST00000558500 ADGBQ8N7X0 1667 aa11.04□□□□□ -0.64
LRRC28-207ENST00000558500 DEPDC5O75140 1603 aa11.03□□□□□ -0.64
LRRC28-207ENST00000558500 POTEAQ6S8J7 498 aa11.03□□□□□ -0.64
LRRC28-207ENST00000558500 RNF17Q9BXT8 1623 aaKnown RBP11.02□□□□□ -0.64
LRRC28-207ENST00000558500 MTUS2Q5JR59 1369 aa11.02□□□□□ -0.65
LRRC28-207ENST00000558500 SYNMO15061 1565 aa11□□□□□ -0.65
LRRC28-207ENST00000558500 IQGAP1P46940 1657 aa10.99□□□□□ -0.65
LRRC28-207ENST00000558500 FAM135BQ49AJ0 1406 aa10.99□□□□□ -0.65
LRRC28-207ENST00000558500 RSPH4AQ5TD94 716 aa10.98□□□□□ -0.65
LRRC28-207ENST00000558500 CCDC141Q6ZP82 1450 aa10.98□□□□□ -0.65
LRRC28-207ENST00000558500 TIAM1Q13009 1591 aa10.98□□□□□ -0.65
LRRC28-207ENST00000558500 STRCP1A6NGW2 1772 aa10.98□□□□□ -0.65
LRRC28-207ENST00000558500 CEP162Q5TB80 1403 aa10.96□□□□□ -0.65
LRRC28-207ENST00000558500 LTKP29376 864 aa10.96□□□□□ -0.65
LRRC28-207ENST00000558500 ERVK-7P63135 1459 aa10.95□□□□□ -0.66
LRRC28-207ENST00000558500 SCAF11Q99590 1463 aaKnown RBP10.95□□□□□ -0.66
LRRC28-207ENST00000558500 TXNDC2Q86VQ3 553 aa10.94□□□□□ -0.66
LRRC28-207ENST00000558500 ABCC3O15438 1527 aa10.94□□□□□ -0.66
LRRC28-207ENST00000558500 EHBP1L1Q8N3D4 1523 aa10.94□□□□□ -0.66
LRRC28-207ENST00000558500 NCOA2Q15596 1464 aa10.93□□□□□ -0.66
LRRC28-207ENST00000558500 ZC3H13Q5T200 1668 aaKnown RBP10.93□□□□□ -0.66
LRRC28-207ENST00000558500 TSPY4P0CV99 314 aa10.93□□□□□ -0.66
LRRC28-207ENST00000558500 TSPY10P0CW01 314 aa10.93□□□□□ -0.66
LRRC28-207ENST00000558500 CAMSAP2Q08AD1 1489 aa10.93□□□□□ -0.66
LRRC28-207ENST00000558500 ARHGAP23Q9P227 1491 aa10.93□□□□□ -0.66
LRRC28-207ENST00000558500 TMEM94Q12767 1356 aa10.92□□□□□ -0.66
LRRC28-207ENST00000558500 SLIT1O75093 1534 aa10.91□□□□□ -0.66
LRRC28-207ENST00000558500 EID1Q9Y6B2 187 aa10.91□□□□□ -0.66
LRRC28-207ENST00000558500 KCNA6P17658 529 aa10.89□□□□□ -0.67
LRRC28-207ENST00000558500 ARHGEF5Q12774 1597 aa10.88□□□□□ -0.67
LRRC28-207ENST00000558500 UPF1Q92900 1129 aaKnown RBP eCLIP10.88□□□□□ -0.67
LRRC28-207ENST00000558500 TMEM2Q9UHN6 1383 aa10.88□□□□□ -0.67
LRRC28-207ENST00000558500 UBR1Q8IWV7 1749 aa10.87□□□□□ -0.67
LRRC28-207ENST00000558500 PROSER2Q86WR7 435 aaPredicted RBP10.87□□□□□ -0.67
LRRC28-207ENST00000558500 RBM33Q96EV2 1170 aaKnown RBP10.87□□□□□ -0.67
LRRC28-207ENST00000558500 MAP3K1Q13233 1512 aa10.87□□□□□ -0.67
LRRC28-207ENST00000558500 JCADQ9P266 1359 aa10.87□□□□□ -0.67
LRRC28-207ENST00000558500 LRRC9Q6ZRR7 1453 aa10.87□□□□□ -0.67
LRRC28-207ENST00000558500 ARHGAP31Q2M1Z3 1444 aa10.86□□□□□ -0.67
LRRC28-207ENST00000558500 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.86□□□□□ -0.67
LRRC28-207ENST00000558500 XIRP1Q702N8 1843 aaKnown RBP10.86□□□□□ -0.67
LRRC28-207ENST00000558500 ROBO1Q9Y6N7 1651 aa10.85□□□□□ -0.67
LRRC28-207ENST00000558500 MROH1Q8NDA8 1641 aa10.85□□□□□ -0.67
LRRC28-207ENST00000558500 SLC26A8Q96RN1 970 aa10.85□□□□□ -0.67
LRRC28-207ENST00000558500 SLAIN2Q9P270 581 aa10.85□□□□□ -0.67
LRRC28-207ENST00000558500 SETD1AO15047 1707 aaKnown RBP10.84□□□□□ -0.67
LRRC28-207ENST00000558500 STAG3Q9UJ98 1225 aa10.84□□□□□ -0.67
LRRC28-207ENST00000558500 PRDM15P57071 1507 aaPredicted RBP10.84□□□□□ -0.67
LRRC28-207ENST00000558500 MAST1Q9Y2H9 1570 aa10.83□□□□□ -0.68
LRRC28-207ENST00000558500 MSH6P52701 1360 aa10.83□□□□□ -0.68
LRRC28-207ENST00000558500 ZNF772Q68DY9 489 aaPredicted RBP10.83□□□□□ -0.68
LRRC28-207ENST00000558500 EIF2AK4Q9P2K8 1649 aaKnown RBP10.83□□□□□ -0.68
LRRC28-207ENST00000558500 NKTRP30414 1462 aaKnown RBP10.82□□□□□ -0.68
LRRC28-207ENST00000558500 TRIM52Q96A61 297 aa10.82□□□□□ -0.68
LRRC28-207ENST00000558500 SPATA31A6Q5VVP1 1343 aa10.82□□□□□ -0.68
LRRC28-207ENST00000558500 IDI1Q13907 227 aa10.81□□□□□ -0.68
LRRC28-207ENST00000558500 TET3O43151 1660 aa10.81□□□□□ -0.68
LRRC28-207ENST00000558500 LRP6O75581 1613 aa10.8□□□□□ -0.68
LRRC28-207ENST00000558500 EFCAB6Q5THR3 1501 aa10.8□□□□□ -0.68
LRRC28-207ENST00000558500 MEX3CQ5U5Q3 659 aaKnown RBP10.8□□□□□ -0.68
LRRC28-207ENST00000558500 FGD6Q6ZV73 1430 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms