RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 PTPRMP28827 1452 aa20.66■□□□□ 0.9
SHMT2-234ENST00000557703 MADDQ8WXG6 1647 aa20.65■□□□□ 0.9
SHMT2-234ENST00000557703 RNF17Q9BXT8 1623 aaKnown RBP20.65■□□□□ 0.9
SHMT2-234ENST00000557703 ITGAEP38570 1179 aa20.65■□□□□ 0.9
SHMT2-234ENST00000557703 FER1L4A9Z1Z3 1794 aa20.64■□□□□ 0.9
SHMT2-234ENST00000557703 WASHC2CQ9Y4E1 1318 aa20.63■□□□□ 0.89
SHMT2-234ENST00000557703 KANK1Q14678 1352 aa20.62■□□□□ 0.89
SHMT2-234ENST00000557703 MROH2AA6NES4 1674 aa20.61■□□□□ 0.89
SHMT2-234ENST00000557703 KDM5DQ9BY66 1539 aa20.61■□□□□ 0.89
SHMT2-234ENST00000557703 HFM1A2PYH4 1435 aa20.61■□□□□ 0.89
SHMT2-234ENST00000557703 SETD1BQ9UPS6 1966 aaKnown RBP20.6■□□□□ 0.89
SHMT2-234ENST00000557703 ZMYM3Q14202 1370 aa20.59■□□□□ 0.89
SHMT2-234ENST00000557703 PRDM15P57071 1507 aaPredicted RBP20.58■□□□□ 0.89
SHMT2-234ENST00000557703 RIMS1Q86UR5 1692 aaKnown RBP20.58■□□□□ 0.89
SHMT2-234ENST00000557703 DEPDC5O75140 1603 aa20.58■□□□□ 0.89
SHMT2-234ENST00000557703 ZC3H13Q5T200 1668 aaKnown RBP20.58■□□□□ 0.88
SHMT2-234ENST00000557703 NAIPQ13075 1403 aa20.56■□□□□ 0.88
SHMT2-234ENST00000557703 NPATQ14207 1427 aa20.55■□□□□ 0.88
SHMT2-234ENST00000557703 MROH1Q8NDA8 1641 aa20.53■□□□□ 0.88
SHMT2-234ENST00000557703 LMTK2Q8IWU2 1503 aa20.53■□□□□ 0.88
SHMT2-234ENST00000557703 ARHGAP31Q2M1Z3 1444 aa20.53■□□□□ 0.88
SHMT2-234ENST00000557703 VWDEQ8N2E2 1590 aa20.52■□□□□ 0.88
SHMT2-234ENST00000557703 ABCC3O15438 1527 aa20.52■□□□□ 0.87
SHMT2-234ENST00000557703 CLTCQ00610 1675 aaKnown RBP20.51■□□□□ 0.87
SHMT2-234ENST00000557703 GCC2Q8IWJ2 1684 aa20.51■□□□□ 0.87
SHMT2-234ENST00000557703 PZPP20742 1482 aa20.5■□□□□ 0.87
SHMT2-234ENST00000557703 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.5■□□□□ 0.87
SHMT2-234ENST00000557703 HRCP23327 699 aa20.49■□□□□ 0.87
SHMT2-234ENST00000557703 UNC13BO14795 1591 aa20.49■□□□□ 0.87
SHMT2-234ENST00000557703 C3P01024 1663 aa20.48■□□□□ 0.87
SHMT2-234ENST00000557703 CEBPAP49715 358 aaPredicted RBP20.47■□□□□ 0.87
SHMT2-234ENST00000557703 RPRD2Q5VT52 1461 aaKnown RBP20.46■□□□□ 0.87
SHMT2-234ENST00000557703 NUP155O75694 1391 aa20.46■□□□□ 0.87
SHMT2-234ENST00000557703 SETD5Q9C0A6 1442 aa20.44■□□□□ 0.86
SHMT2-234ENST00000557703 CAMSAP1Q5T5Y3 1602 aa20.42■□□□□ 0.86
SHMT2-234ENST00000557703 IQGAP3Q86VI3 1631 aa20.42■□□□□ 0.86
SHMT2-234ENST00000557703 TRIM26Q12899 539 aaPredicted RBP20.41■□□□□ 0.86
SHMT2-234ENST00000557703 UHRF1BP1Q6BDS2 1440 aa20.41■□□□□ 0.86
SHMT2-234ENST00000557703 TET3O43151 1660 aa20.4■□□□□ 0.86
SHMT2-234ENST00000557703 CEP152O94986 1710 aa20.39■□□□□ 0.86
SHMT2-234ENST00000557703 EFCAB6Q5THR3 1501 aa20.39■□□□□ 0.85
SHMT2-234ENST00000557703 TNRQ92752 1358 aa20.39■□□□□ 0.85
SHMT2-234ENST00000557703 PREX1Q8TCU6 1659 aa20.38■□□□□ 0.85
SHMT2-234ENST00000557703 SPATA31D1Q6ZQQ2 1576 aa20.38■□□□□ 0.85
SHMT2-234ENST00000557703 NLRP1Q9C000 1473 aa20.38■□□□□ 0.85
SHMT2-234ENST00000557703 PLPPR3Q6T4P5 718 aa20.37■□□□□ 0.85
SHMT2-234ENST00000557703 ERVK-7P63135 1459 aa20.37■□□□□ 0.85
SHMT2-234ENST00000557703 FBXO31Q5XUX0 539 aaPredicted RBP20.36■□□□□ 0.85
SHMT2-234ENST00000557703 TRIM52Q96A61 297 aa20.36■□□□□ 0.85
SHMT2-234ENST00000557703 SLC52A1Q9NWF4 448 aa20.36■□□□□ 0.85
SHMT2-234ENST00000557703 LMTK3Q96Q04 1460 aa20.34■□□□□ 0.85
SHMT2-234ENST00000557703 NOS1P29475 1434 aa20.34■□□□□ 0.85
SHMT2-234ENST00000557703 RAB3GAP2Q9H2M9 1393 aa20.33■□□□□ 0.84
SHMT2-234ENST00000557703 A2ML1A8K2U0 1454 aa20.31■□□□□ 0.84
SHMT2-234ENST00000557703 SLC4A1APQ9BWU0 796 aaKnown RBP20.31■□□□□ 0.84
SHMT2-234ENST00000557703 THEMISQ8N1K5 641 aaPredicted RBP20.3■□□□□ 0.84
SHMT2-234ENST00000557703 ZNF142P52746 1687 aaPredicted RBP20.29■□□□□ 0.84
SHMT2-234ENST00000557703 MYO3AQ8NEV4 1616 aa20.27■□□□□ 0.84
SHMT2-234ENST00000557703 CFAP65Q6ZU64 1925 aaKnown RBP20.27■□□□□ 0.84
SHMT2-234ENST00000557703 CEP170BQ9Y4F5 1589 aaPredicted RBP20.27■□□□□ 0.84
SHMT2-234ENST00000557703 PTPRTO14522 1441 aa20.27■□□□□ 0.83
SHMT2-234ENST00000557703 MPHOSPH9Q99550 1183 aa20.26■□□□□ 0.83
SHMT2-234ENST00000557703 E9PCH4 1651 aa20.26■□□□□ 0.83
SHMT2-234ENST00000557703 PKD2Q13563 968 aa20.25■□□□□ 0.83
SHMT2-234ENST00000557703 PLA2R1Q13018 1463 aa20.24■□□□□ 0.83
SHMT2-234ENST00000557703 KDM5AP29375 1690 aaKnown RBP20.24■□□□□ 0.83
SHMT2-234ENST00000557703 DMRT2Q9Y5R5 561 aa20.24■□□□□ 0.83
SHMT2-234ENST00000557703 IDI1Q13907 227 aa20.23■□□□□ 0.83
SHMT2-234ENST00000557703 UGGT1Q9NYU2 1555 aa20.23■□□□□ 0.83
SHMT2-234ENST00000557703 STAG3Q9UJ98 1225 aa20.2■□□□□ 0.82
SHMT2-234ENST00000557703 SYNMO15061 1565 aa20.2■□□□□ 0.82
SHMT2-234ENST00000557703 HDGFP51858 240 aaKnown RBP20.19■□□□□ 0.82
SHMT2-234ENST00000557703 HSPA2P54652 639 aa20.18■□□□□ 0.82
SHMT2-234ENST00000557703 PIK3C2BO00750 1634 aa20.17■□□□□ 0.82
SHMT2-234ENST00000557703 SPHKAPQ2M3C7 1700 aa20.17■□□□□ 0.82
SHMT2-234ENST00000557703 ANKLE2Q86XL3 938 aa20.17■□□□□ 0.82
SHMT2-234ENST00000557703 TRPM2O94759 1503 aa20.17■□□□□ 0.82
SHMT2-234ENST00000557703 EID1Q9Y6B2 187 aa20.14■□□□□ 0.81
SHMT2-234ENST00000557703 UBR1Q8IWV7 1749 aa20.13■□□□□ 0.81
SHMT2-234ENST00000557703 SLIT1O75093 1534 aa20.13■□□□□ 0.81
SHMT2-234ENST00000557703 ADGRB3O60242 1522 aa20.12■□□□□ 0.81
SHMT2-234ENST00000557703 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.12■□□□□ 0.81
SHMT2-234ENST00000557703 ARHGAP23Q9P227 1491 aa20.11■□□□□ 0.81
SHMT2-234ENST00000557703 TMEM2Q9UHN6 1383 aa20.11■□□□□ 0.81
SHMT2-234ENST00000557703 CCDC144AA2RUR9 1427 aa20.1■□□□□ 0.81
SHMT2-234ENST00000557703 MED14O60244 1454 aa20.09■□□□□ 0.81
SHMT2-234ENST00000557703 TMEM131LA2VDJ0 1609 aa20.08■□□□□ 0.8
SHMT2-234ENST00000557703 RPGRIP1LQ68CZ1 1315 aa20.07■□□□□ 0.8
SHMT2-234ENST00000557703 STRCQ7RTU9 1775 aa20.07■□□□□ 0.8
SHMT2-234ENST00000557703 NEURL4Q96JN8 1562 aa20.07■□□□□ 0.8
SHMT2-234ENST00000557703 ANKRD30BQ9BXX2 1392 aa20.07■□□□□ 0.8
SHMT2-234ENST00000557703 TXNDC2Q86VQ3 553 aa20.06■□□□□ 0.8
SHMT2-234ENST00000557703 SCAF11Q99590 1463 aaKnown RBP20.05■□□□□ 0.8
SHMT2-234ENST00000557703 CHGAP10645 457 aaKnown RBP20.05■□□□□ 0.8
SHMT2-234ENST00000557703 KIF1BO60333 1816 aa20.04■□□□□ 0.8
SHMT2-234ENST00000557703 FOXD1Q16676 465 aa20.04■□□□□ 0.8
SHMT2-234ENST00000557703 NCKAP5LQ9HCH0 1330 aa20.03■□□□□ 0.8
SHMT2-234ENST00000557703 CLTCL1P53675 1640 aa20.03■□□□□ 0.8
SHMT2-234ENST00000557703 ZFYVE9O95405 1425 aa20.02■□□□□ 0.8
SHMT2-234ENST00000557703 POLR1AO95602 1720 aaPredicted RBP20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms