RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 SPAG9O60271 1321 aaKnown RBP22.42■■□□□ 1.18
TMEM260-215ENST00000557626 ATP7AQ04656 1500 aa22.41■■□□□ 1.18
TMEM260-215ENST00000557626 FAM135AQ9P2D6 1515 aa22.41■■□□□ 1.18
TMEM260-215ENST00000557626 UGGT1Q9NYU2 1555 aa22.4■■□□□ 1.18
TMEM260-215ENST00000557626 XIRP1Q702N8 1843 aaKnown RBP22.39■■□□□ 1.17
TMEM260-215ENST00000557626 ROBO1Q9Y6N7 1651 aa22.37■■□□□ 1.17
TMEM260-215ENST00000557626 FBXO31Q5XUX0 539 aaPredicted RBP22.37■■□□□ 1.17
TMEM260-215ENST00000557626 SYCP2Q9BX26 1530 aa22.35■■□□□ 1.17
TMEM260-215ENST00000557626 NLRP1Q9C000 1473 aa22.34■■□□□ 1.17
TMEM260-215ENST00000557626 INO80Q9ULG1 1556 aaPredicted RBP22.34■■□□□ 1.17
TMEM260-215ENST00000557626 CSRNP3Q8WYN3 585 aa22.34■■□□□ 1.17
TMEM260-215ENST00000557626 CDC42BPAQ5VT25 1732 aa22.33■■□□□ 1.17
TMEM260-215ENST00000557626 PZPP20742 1482 aa22.33■■□□□ 1.16
TMEM260-215ENST00000557626 FMN1Q68DA7 1419 aa22.32■■□□□ 1.16
TMEM260-215ENST00000557626 ZC3H13Q5T200 1668 aaKnown RBP22.31■■□□□ 1.16
TMEM260-215ENST00000557626 ZNF772Q68DY9 489 aaPredicted RBP22.31■■□□□ 1.16
TMEM260-215ENST00000557626 ADGBQ8N7X0 1667 aa22.3■■□□□ 1.16
TMEM260-215ENST00000557626 ZNF777Q9ULD5 760 aaPredicted RBP22.29■■□□□ 1.16
TMEM260-215ENST00000557626 JCADQ9P266 1359 aa22.28■■□□□ 1.16
TMEM260-215ENST00000557626 MIA2Q96PC5 1412 aa22.28■■□□□ 1.16
TMEM260-215ENST00000557626 PHLPP1O60346 1717 aa22.26■■□□□ 1.15
TMEM260-215ENST00000557626 LRRIQ1Q96JM4 1722 aa22.26■■□□□ 1.15
TMEM260-215ENST00000557626 KDM5DQ9BY66 1539 aa22.26■■□□□ 1.15
TMEM260-215ENST00000557626 RXRBP28702 533 aa22.25■■□□□ 1.15
TMEM260-215ENST00000557626 HNRNPMP52272 730 aaKnown RBP eCLIP22.25■■□□□ 1.15
TMEM260-215ENST00000557626 MEX3CQ5U5Q3 659 aaKnown RBP22.25■■□□□ 1.15
TMEM260-215ENST00000557626 CDK12Q9NYV4 1490 aaPredicted RBP22.23■■□□□ 1.15
TMEM260-215ENST00000557626 LRRC9Q6ZRR7 1453 aa22.22■■□□□ 1.15
TMEM260-215ENST00000557626 LRP6O75581 1613 aa22.21■■□□□ 1.15
TMEM260-215ENST00000557626 ZRANB1Q9UGI0 708 aa22.17■■□□□ 1.14
TMEM260-215ENST00000557626 TMEM94Q12767 1356 aa22.16■■□□□ 1.14
TMEM260-215ENST00000557626 FOXD1Q16676 465 aa22.16■■□□□ 1.14
TMEM260-215ENST00000557626 SCAF11Q99590 1463 aaKnown RBP22.15■■□□□ 1.14
TMEM260-215ENST00000557626 KIAA1107Q9UPP5 1409 aa22.15■■□□□ 1.14
TMEM260-215ENST00000557626 SPATA31A6Q5VVP1 1343 aa22.15■■□□□ 1.14
TMEM260-215ENST00000557626 PLEKHH2Q8IVE3 1493 aa22.15■■□□□ 1.14
TMEM260-215ENST00000557626 WASHC2CQ9Y4E1 1318 aa22.14■■□□□ 1.14
TMEM260-215ENST00000557626 SETBP1Q9Y6X0 1596 aa22.13■■□□□ 1.13
TMEM260-215ENST00000557626 COL16A1Q07092 1604 aaPredicted RBP22.13■■□□□ 1.13
TMEM260-215ENST00000557626 MAP3K1Q13233 1512 aa22.11■■□□□ 1.13
TMEM260-215ENST00000557626 DHX29Q7Z478 1369 aaKnown RBP22.1■■□□□ 1.13
TMEM260-215ENST00000557626 KIF3BO15066 747 aa22.09■■□□□ 1.13
TMEM260-215ENST00000557626 FGD6Q6ZV73 1430 aa22.08■■□□□ 1.13
TMEM260-215ENST00000557626 GPATCH8Q9UKJ3 1502 aaKnown RBP22.08■■□□□ 1.13
TMEM260-215ENST00000557626 UBR1Q8IWV7 1749 aa22.08■■□□□ 1.12
TMEM260-215ENST00000557626 CCDC18Q5T9S5 1454 aa22.07■■□□□ 1.12
TMEM260-215ENST00000557626 ARHGAP35Q9NRY4 1499 aa22.07■■□□□ 1.12
TMEM260-215ENST00000557626 RGS12O14924 1447 aa22.06■■□□□ 1.12
TMEM260-215ENST00000557626 NUTM2BA6NNL0 878 aaPredicted RBP22.05■■□□□ 1.12
TMEM260-215ENST00000557626 NUTM2EB1AL46 878 aaPredicted RBP22.05■■□□□ 1.12
TMEM260-215ENST00000557626 NUTM2DQ5VT03 806 aaPredicted RBP22.05■■□□□ 1.12
TMEM260-215ENST00000557626 NUTM2AQ8IVF1 878 aaPredicted RBP22.05■■□□□ 1.12
TMEM260-215ENST00000557626 LTKP29376 864 aa22.04■■□□□ 1.12
TMEM260-215ENST00000557626 TXNDC2Q86VQ3 553 aa22.04■■□□□ 1.12
TMEM260-215ENST00000557626 SLAIN2Q9P270 581 aa22.04■■□□□ 1.12
TMEM260-215ENST00000557626 SHPRHQ149N8 1683 aa22.04■■□□□ 1.12
TMEM260-215ENST00000557626 PROSER2Q86WR7 435 aaPredicted RBP22.03■■□□□ 1.12
TMEM260-215ENST00000557626 RBM33Q96EV2 1170 aaKnown RBP22.03■■□□□ 1.12
TMEM260-215ENST00000557626 MSH6P52701 1360 aa22.02■■□□□ 1.12
TMEM260-215ENST00000557626 CFDP1Q9UEE9 299 aaPredicted RBP22.02■■□□□ 1.12
TMEM260-215ENST00000557626 TIAM1Q13009 1591 aa22.02■■□□□ 1.12
TMEM260-215ENST00000557626 EEA1Q15075 1411 aa22.01■■□□□ 1.11
TMEM260-215ENST00000557626 ARHGAP23Q9P227 1491 aa22.01■■□□□ 1.11
TMEM260-215ENST00000557626 SLIT1O75093 1534 aa22.01■■□□□ 1.11
TMEM260-215ENST00000557626 RTEL1-TNFRSF6BF6WH68 1400 aa21.99■■□□□ 1.11
TMEM260-215ENST00000557626 PRDM15P57071 1507 aaPredicted RBP21.99■■□□□ 1.11
TMEM260-215ENST00000557626 AFF2P51816 1311 aa21.99■■□□□ 1.11
TMEM260-215ENST00000557626 ATAD2Q6PL18 1390 aa21.99■■□□□ 1.11
TMEM260-215ENST00000557626 ERVK-7P63135 1459 aa21.98■■□□□ 1.11
TMEM260-215ENST00000557626 NCOA2Q15596 1464 aa21.98■■□□□ 1.11
TMEM260-215ENST00000557626 KCNA6P17658 529 aa21.98■■□□□ 1.11
TMEM260-215ENST00000557626 EID1Q9Y6B2 187 aa21.98■■□□□ 1.11
TMEM260-215ENST00000557626 EP400Q96L91 3159 aa21.97■■□□□ 1.11
TMEM260-215ENST00000557626 RBM6P78332 1123 aaKnown RBP21.95■■□□□ 1.1
TMEM260-215ENST00000557626 NKTRP30414 1462 aaKnown RBP21.94■■□□□ 1.1
TMEM260-215ENST00000557626 ABCC3O15438 1527 aa21.93■■□□□ 1.1
TMEM260-215ENST00000557626 CFAP65Q6ZU64 1925 aaKnown RBP21.92■■□□□ 1.1
TMEM260-215ENST00000557626 AHDC1Q5TGY3 1603 aaPredicted RBP21.91■■□□□ 1.1
TMEM260-215ENST00000557626 CCNB3Q8WWL7 1395 aa21.91■■□□□ 1.1
TMEM260-215ENST00000557626 CASKIN1Q8WXD9 1431 aa21.9■■□□□ 1.1
TMEM260-215ENST00000557626 QTRT2Q9H974 415 aaKnown RBP21.9■■□□□ 1.1
TMEM260-215ENST00000557626 MBD5Q9P267 1494 aa21.9■■□□□ 1.1
TMEM260-215ENST00000557626 KDM5AP29375 1690 aaKnown RBP21.89■■□□□ 1.1
TMEM260-215ENST00000557626 NWD1Q149M9 1564 aa21.89■■□□□ 1.09
TMEM260-215ENST00000557626 LRP5O75197 1615 aa21.87■■□□□ 1.09
TMEM260-215ENST00000557626 ZNF644Q9H582 1327 aaPredicted RBP21.86■■□□□ 1.09
TMEM260-215ENST00000557626 UBTFP17480 764 aaKnown RBP21.86■■□□□ 1.09
TMEM260-215ENST00000557626 SLC26A8Q96RN1 970 aa21.84■■□□□ 1.09
TMEM260-215ENST00000557626 DIP2AQ14689 1571 aa21.83■■□□□ 1.09
TMEM260-215ENST00000557626 NGLY1Q96IV0 654 aa21.83■■□□□ 1.09
TMEM260-215ENST00000557626 TMEM2Q9UHN6 1383 aa21.83■■□□□ 1.08
TMEM260-215ENST00000557626 EHMT2Q96KQ7 1210 aa21.82■■□□□ 1.08
TMEM260-215ENST00000557626 C8orf37Q96NL8 207 aa21.81■■□□□ 1.08
TMEM260-215ENST00000557626 TET3O43151 1660 aa21.8■■□□□ 1.08
TMEM260-215ENST00000557626 CAMSAP2Q08AD1 1489 aa21.79■■□□□ 1.08
TMEM260-215ENST00000557626 CCDC141Q6ZP82 1450 aa21.78■■□□□ 1.08
TMEM260-215ENST00000557626 CEP152O94986 1710 aa21.78■■□□□ 1.08
TMEM260-215ENST00000557626 PIK3C2BO00750 1634 aa21.78■■□□□ 1.08
TMEM260-215ENST00000557626 CCDC125Q86Z20 511 aa21.78■■□□□ 1.08
TMEM260-215ENST00000557626 FYCO1Q9BQS8 1478 aa21.77■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms