RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	GGT6	Q6P531	493 aa		14.22	□□□□□ -0.13
SYNE2-222	ENST00000556725	CHRDL2	Q6WN34	429 aa		14.22	□□□□□ -0.13
SYNE2-222	ENST00000556725	CCDC18	Q5T9S5	1454 aa		14.22	□□□□□ -0.13
SYNE2-222	ENST00000556725	SYCP2	Q9BX26	1530 aa		14.21	□□□□□ -0.13
SYNE2-222	ENST00000556725	PTPRK	Q15262	1439 aa		14.21	□□□□□ -0.13
SYNE2-222	ENST00000556725	GPATCH8	Q9UKJ3	1502 aa	Known RBP	14.2	□□□□□ -0.14
SYNE2-222	ENST00000556725	PKD2	Q13563	968 aa		14.2	□□□□□ -0.14
SYNE2-222	ENST00000556725	MYO3A	Q8NEV4	1616 aa		14.19	□□□□□ -0.14
SYNE2-222	ENST00000556725	PLA2R1	Q13018	1463 aa		14.18	□□□□□ -0.14
SYNE2-222	ENST00000556725	TCOF1	Q13428	1488 aa	Known RBP	14.18	□□□□□ -0.14
SYNE2-222	ENST00000556725	ATP7A	Q04656	1500 aa		14.18	□□□□□ -0.14
SYNE2-222	ENST00000556725	A2M	P01023	1474 aa		14.18	□□□□□ -0.14
SYNE2-222	ENST00000556725	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	14.17	□□□□□ -0.14
SYNE2-222	ENST00000556725	ZNF142	P52746	1687 aa	Predicted RBP	14.17	□□□□□ -0.14
SYNE2-222	ENST00000556725	PLXNC1	O60486	1568 aa		14.17	□□□□□ -0.14
SYNE2-222	ENST00000556725	HSPA1L	P34931	641 aa		14.16	□□□□□ -0.14
SYNE2-222	ENST00000556725	PIP4K2B	P78356	416 aa		14.16	□□□□□ -0.14
SYNE2-222	ENST00000556725	CFDP1	Q9UEE9	299 aa	Predicted RBP	14.16	□□□□□ -0.14
SYNE2-222	ENST00000556725	KIAA1107	Q9UPP5	1409 aa		14.15	□□□□□ -0.14
SYNE2-222	ENST00000556725	ZNF644	Q9H582	1327 aa	Predicted RBP	14.15	□□□□□ -0.15
SYNE2-222	ENST00000556725	INO80	Q9ULG1	1556 aa	Predicted RBP	14.14	□□□□□ -0.15
SYNE2-222	ENST00000556725	FYCO1	Q9BQS8	1478 aa		14.13	□□□□□ -0.15
SYNE2-222	ENST00000556725	FBXO31	Q5XUX0	539 aa	Predicted RBP	14.13	□□□□□ -0.15
SYNE2-222	ENST00000556725	DNMT1	P26358	1616 aa	Known RBP	14.12	□□□□□ -0.15
SYNE2-222	ENST00000556725	A2ML1	A8K2U0	1454 aa		14.12	□□□□□ -0.15
SYNE2-222	ENST00000556725	CCNB3	Q8WWL7	1395 aa		14.11	□□□□□ -0.15
SYNE2-222	ENST00000556725	PLEKHH2	Q8IVE3	1493 aa		14.11	□□□□□ -0.15
SYNE2-222	ENST00000556725	MED1	Q15648	1581 aa	Predicted RBP	14.09	□□□□□ -0.15
SYNE2-222	ENST00000556725	TOM1	O60784	492 aa		14.09	□□□□□ -0.15
SYNE2-222	ENST00000556725	ADGB	Q8N7X0	1667 aa		14.08	□□□□□ -0.16
SYNE2-222	ENST00000556725	NEURL4	Q96JN8	1562 aa		14.08	□□□□□ -0.16
SYNE2-222	ENST00000556725	MBD5	Q9P267	1494 aa		14.07	□□□□□ -0.16
SYNE2-222	ENST00000556725	SHANK2	Q9UPX8	1470 aa		14.07	□□□□□ -0.16
SYNE2-222	ENST00000556725	DHX29	Q7Z478	1369 aa	Known RBP	14.07	□□□□□ -0.16
SYNE2-222	ENST00000556725	TNR	Q92752	1358 aa		14.07	□□□□□ -0.16
SYNE2-222	ENST00000556725	KIF3B	O15066	747 aa		14.06	□□□□□ -0.16
SYNE2-222	ENST00000556725	MTUS2	Q5JR59	1369 aa		14.06	□□□□□ -0.16
SYNE2-222	ENST00000556725	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	14.06	□□□□□ -0.16
SYNE2-222	ENST00000556725	POLR1A	O95602	1720 aa	Predicted RBP	14.05	□□□□□ -0.16
SYNE2-222	ENST00000556725	CPS1	P31327	1500 aa		14.05	□□□□□ -0.16
SYNE2-222	ENST00000556725	ANKLE2	Q86XL3	938 aa		14.04	□□□□□ -0.16
SYNE2-222	ENST00000556725	RTEL1-TNFRSF6B	F6WH68	1400 aa		14.03	□□□□□ -0.16
SYNE2-222	ENST00000556725	TIAM1	Q13009	1591 aa		14.03	□□□□□ -0.16
SYNE2-222	ENST00000556725	ALK	Q9UM73	1620 aa		14.03	□□□□□ -0.16
SYNE2-222	ENST00000556725	VWDE	Q8N2E2	1590 aa		14.02	□□□□□ -0.16
SYNE2-222	ENST00000556725	WASHC2C	Q9Y4E1	1318 aa		14.02	□□□□□ -0.17
SYNE2-222	ENST00000556725	PZP	P20742	1482 aa		14.01	□□□□□ -0.17
SYNE2-222	ENST00000556725	THEMIS	Q8N1K5	641 aa	Predicted RBP	14.01	□□□□□ -0.17
SYNE2-222	ENST00000556725	SP7	Q8TDD2	431 aa	Predicted RBP	14.01	□□□□□ -0.17
SYNE2-222	ENST00000556725	MIA2	Q96PC5	1412 aa		14	□□□□□ -0.17
SYNE2-222	ENST00000556725	POLA2	Q14181	598 aa		13.99	□□□□□ -0.17
SYNE2-222	ENST00000556725	NPHP4	O75161	1426 aa	Predicted RBP	13.98	□□□□□ -0.17
SYNE2-222	ENST00000556725	KDM5D	Q9BY66	1539 aa		13.98	□□□□□ -0.17
SYNE2-222	ENST00000556725	STRCP1	A6NGW2	1772 aa		13.98	□□□□□ -0.17
SYNE2-222	ENST00000556725	MED14	O60244	1454 aa		13.98	□□□□□ -0.17
SYNE2-222	ENST00000556725	UGGT1	Q9NYU2	1555 aa		13.97	□□□□□ -0.17
SYNE2-222	ENST00000556725	CEP162	Q5TB80	1403 aa		13.96	□□□□□ -0.18
SYNE2-222	ENST00000556725	CCDC141	Q6ZP82	1450 aa		13.95	□□□□□ -0.18
SYNE2-222	ENST00000556725	NLRP1	Q9C000	1473 aa		13.95	□□□□□ -0.18
SYNE2-222	ENST00000556725	DEPDC5	O75140	1603 aa		13.95	□□□□□ -0.18
SYNE2-222	ENST00000556725	EHBP1L1	Q8N3D4	1523 aa		13.95	□□□□□ -0.18
SYNE2-222	ENST00000556725	LRRC7	Q96NW7	1537 aa		13.95	□□□□□ -0.18
SYNE2-222	ENST00000556725	FAM135A	Q9P2D6	1515 aa		13.95	□□□□□ -0.18
SYNE2-222	ENST00000556725	RGS17	Q9UGC6	210 aa	Predicted RBP	13.94	□□□□□ -0.18
SYNE2-222	ENST00000556725	IQGAP1	P46940	1657 aa		13.94	□□□□□ -0.18
SYNE2-222	ENST00000556725	CAMSAP2	Q08AD1	1489 aa		13.93	□□□□□ -0.18
SYNE2-222	ENST00000556725	RSPH4A	Q5TD94	716 aa		13.92	□□□□□ -0.18
SYNE2-222	ENST00000556725	CFAP65	Q6ZU64	1925 aa	Known RBP	13.92	□□□□□ -0.18
SYNE2-222	ENST00000556725	TSPY4	P0CV99	314 aa		13.9	□□□□□ -0.18
SYNE2-222	ENST00000556725	TSPY10	P0CW01	314 aa		13.9	□□□□□ -0.18
SYNE2-222	ENST00000556725	NCOA2	Q15596	1464 aa		13.9	□□□□□ -0.18
SYNE2-222	ENST00000556725	LTK	P29376	864 aa		13.89	□□□□□ -0.19
SYNE2-222	ENST00000556725	MYCN	P04198	464 aa	Predicted RBP	13.88	□□□□□ -0.19
SYNE2-222	ENST00000556725	ABCC3	O15438	1527 aa		13.88	□□□□□ -0.19
SYNE2-222	ENST00000556725	RNF17	Q9BXT8	1623 aa	Known RBP	13.87	□□□□□ -0.19
SYNE2-222	ENST00000556725	AKT1S1	Q96B36	256 aa		13.87	□□□□□ -0.19
SYNE2-222	ENST00000556725	ZC3H13	Q5T200	1668 aa	Known RBP	13.87	□□□□□ -0.19
SYNE2-222	ENST00000556725	ARHGEF5	Q12774	1597 aa		13.87	□□□□□ -0.19
SYNE2-222	ENST00000556725	ERVK-7	P63135	1459 aa		13.87	□□□□□ -0.19
SYNE2-222	ENST00000556725	XIRP1	Q702N8	1843 aa	Known RBP	13.85	□□□□□ -0.19
SYNE2-222	ENST00000556725	UBR1	Q8IWV7	1749 aa		13.85	□□□□□ -0.19
SYNE2-222	ENST00000556725	SYNM	O15061	1565 aa		13.85	□□□□□ -0.19
SYNE2-222	ENST00000556725	TXNDC2	Q86VQ3	553 aa		13.85	□□□□□ -0.19
SYNE2-222	ENST00000556725	CEP152	O94986	1710 aa		13.84	□□□□□ -0.19
SYNE2-222	ENST00000556725	SCAF11	Q99590	1463 aa	Known RBP	13.83	□□□□□ -0.2
SYNE2-222	ENST00000556725	POTEA	Q6S8J7	498 aa		13.83	□□□□□ -0.2
SYNE2-222	ENST00000556725	MROH1	Q8NDA8	1641 aa		13.82	□□□□□ -0.2
SYNE2-222	ENST00000556725	ARHGAP23	Q9P227	1491 aa		13.8	□□□□□ -0.2
SYNE2-222	ENST00000556725	MAST1	Q9Y2H9	1570 aa		13.8	□□□□□ -0.2
SYNE2-222	ENST00000556725	RBM33	Q96EV2	1170 aa	Known RBP	13.8	□□□□□ -0.2
SYNE2-222	ENST00000556725	SLIT1	O75093	1534 aa		13.8	□□□□□ -0.2
SYNE2-222	ENST00000556725	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.79	□□□□□ -0.2
SYNE2-222	ENST00000556725	KANK4	Q5T7N3	995 aa	Predicted RBP	13.78	□□□□□ -0.2
SYNE2-222	ENST00000556725	EID1	Q9Y6B2	187 aa		13.78	□□□□□ -0.2
SYNE2-222	ENST00000556725	FAM135B	Q49AJ0	1406 aa		13.78	□□□□□ -0.2
SYNE2-222	ENST00000556725	LRRC9	Q6ZRR7	1453 aa		13.76	□□□□□ -0.21
SYNE2-222	ENST00000556725	TMEM94	Q12767	1356 aa		13.76	□□□□□ -0.21
SYNE2-222	ENST00000556725	TMEM2	Q9UHN6	1383 aa		13.75	□□□□□ -0.21
SYNE2-222	ENST00000556725	PROSER2	Q86WR7	435 aa	Predicted RBP	13.75	□□□□□ -0.21
SYNE2-222	ENST00000556725	PIP4P2	Q8N4L2	257 aa		13.75	□□□□□ -0.21

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