RNA–Protein interactions for RNA: ENST00000556432.1

ACTN1-219, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 558 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-219ENST00000556432 POLR1AO95602 1720 aaPredicted RBP22.6■■□□□ 1.21
ACTN1-219ENST00000556432 PHF23Q9BUL5 403 aaPredicted RBP22.6■■□□□ 1.21
ACTN1-219ENST00000556432 SHANK2Q9UPX8 1470 aa22.59■■□□□ 1.21
ACTN1-219ENST00000556432 FBXO31Q5XUX0 539 aaPredicted RBP22.58■■□□□ 1.21
ACTN1-219ENST00000556432 NEURL4Q96JN8 1562 aa22.56■■□□□ 1.2
ACTN1-219ENST00000556432 KIF3BO15066 747 aa22.56■■□□□ 1.2
ACTN1-219ENST00000556432 ANKLE2Q86XL3 938 aa22.56■■□□□ 1.2
ACTN1-219ENST00000556432 DHX29Q7Z478 1369 aaKnown RBP22.55■■□□□ 1.2
ACTN1-219ENST00000556432 TIAM1Q13009 1591 aa22.55■■□□□ 1.2
ACTN1-219ENST00000556432 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.54■■□□□ 1.2
ACTN1-219ENST00000556432 RTEL1-TNFRSF6BF6WH68 1400 aa22.54■■□□□ 1.2
ACTN1-219ENST00000556432 KDM5DQ9BY66 1539 aa22.53■■□□□ 1.2
ACTN1-219ENST00000556432 SENP3Q9H4L4 574 aaPredicted RBP22.53■■□□□ 1.2
ACTN1-219ENST00000556432 WASHC2CQ9Y4E1 1318 aa22.53■■□□□ 1.2
ACTN1-219ENST00000556432 PZPP20742 1482 aa22.53■■□□□ 1.2
ACTN1-219ENST00000556432 MBD5Q9P267 1494 aa22.53■■□□□ 1.2
ACTN1-219ENST00000556432 THEMISQ8N1K5 641 aaPredicted RBP22.51■■□□□ 1.19
ACTN1-219ENST00000556432 EHBP1L1Q8N3D4 1523 aa22.49■■□□□ 1.19
ACTN1-219ENST00000556432 NPHP4O75161 1426 aaPredicted RBP22.48■■□□□ 1.19
ACTN1-219ENST00000556432 FAM135AQ9P2D6 1515 aa22.48■■□□□ 1.19
ACTN1-219ENST00000556432 VWDEQ8N2E2 1590 aa22.48■■□□□ 1.19
ACTN1-219ENST00000556432 UGGT1Q9NYU2 1555 aa22.47■■□□□ 1.19
ACTN1-219ENST00000556432 CCDC141Q6ZP82 1450 aa22.47■■□□□ 1.19
ACTN1-219ENST00000556432 NLRP1Q9C000 1473 aa22.47■■□□□ 1.19
ACTN1-219ENST00000556432 MIA2Q96PC5 1412 aa22.46■■□□□ 1.19
ACTN1-219ENST00000556432 CEP162Q5TB80 1403 aa22.43■■□□□ 1.18
ACTN1-219ENST00000556432 DEPDC5O75140 1603 aa22.42■■□□□ 1.18
ACTN1-219ENST00000556432 MED14O60244 1454 aa22.41■■□□□ 1.18
ACTN1-219ENST00000556432 CAMSAP2Q08AD1 1489 aa22.41■■□□□ 1.18
ACTN1-219ENST00000556432 IQGAP1P46940 1657 aa22.41■■□□□ 1.18
ACTN1-219ENST00000556432 ALKQ9UM73 1620 aa22.4■■□□□ 1.18
ACTN1-219ENST00000556432 RSPH4AQ5TD94 716 aa22.38■■□□□ 1.17
ACTN1-219ENST00000556432 TSPY4P0CV99 314 aa22.36■■□□□ 1.17
ACTN1-219ENST00000556432 TSPY10P0CW01 314 aa22.36■■□□□ 1.17
ACTN1-219ENST00000556432 LRRC7Q96NW7 1537 aa22.36■■□□□ 1.17
ACTN1-219ENST00000556432 RNF17Q9BXT8 1623 aaKnown RBP22.35■■□□□ 1.17
ACTN1-219ENST00000556432 NCOA2Q15596 1464 aa22.35■■□□□ 1.17
ACTN1-219ENST00000556432 SYNMO15061 1565 aa22.33■■□□□ 1.17
ACTN1-219ENST00000556432 STRCP1A6NGW2 1772 aa22.33■■□□□ 1.16
ACTN1-219ENST00000556432 ABCC3O15438 1527 aa22.31■■□□□ 1.16
ACTN1-219ENST00000556432 ARHGEF5Q12774 1597 aa22.29■■□□□ 1.16
ACTN1-219ENST00000556432 ERVK-7P63135 1459 aa22.29■■□□□ 1.16
ACTN1-219ENST00000556432 ZC3H13Q5T200 1668 aaKnown RBP22.28■■□□□ 1.16
ACTN1-219ENST00000556432 SCAF11Q99590 1463 aaKnown RBP22.26■■□□□ 1.15
ACTN1-219ENST00000556432 TXNDC2Q86VQ3 553 aa22.22■■□□□ 1.15
ACTN1-219ENST00000556432 UBR1Q8IWV7 1749 aa22.21■■□□□ 1.15
ACTN1-219ENST00000556432 CFAP65Q6ZU64 1925 aaKnown RBP22.21■■□□□ 1.15
ACTN1-219ENST00000556432 EIF2AK4Q9P2K8 1649 aaKnown RBP22.2■■□□□ 1.15
ACTN1-219ENST00000556432 CEP152O94986 1710 aa22.2■■□□□ 1.14
ACTN1-219ENST00000556432 RGS17Q9UGC6 210 aaPredicted RBP22.2■■□□□ 1.14
ACTN1-219ENST00000556432 EID1Q9Y6B2 187 aa22.2■■□□□ 1.14
ACTN1-219ENST00000556432 LTKP29376 864 aa22.19■■□□□ 1.14
ACTN1-219ENST00000556432 MAST1Q9Y2H9 1570 aa22.18■■□□□ 1.14
ACTN1-219ENST00000556432 MROH1Q8NDA8 1641 aa22.17■■□□□ 1.14
ACTN1-219ENST00000556432 STAG3Q9UJ98 1225 aa22.15■■□□□ 1.14
ACTN1-219ENST00000556432 SLIT1O75093 1534 aa22.15■■□□□ 1.14
ACTN1-219ENST00000556432 ARHGAP23Q9P227 1491 aa22.15■■□□□ 1.14
ACTN1-219ENST00000556432 XIRP1Q702N8 1843 aaKnown RBP22.12■■□□□ 1.13
ACTN1-219ENST00000556432 FAM135BQ49AJ0 1406 aa22.12■■□□□ 1.13
ACTN1-219ENST00000556432 DUOX2Q9NRD8 1548 aa22.11■■□□□ 1.13
ACTN1-219ENST00000556432 LRRC9Q6ZRR7 1453 aa22.11■■□□□ 1.13
ACTN1-219ENST00000556432 POTEAQ6S8J7 498 aa22.1■■□□□ 1.13
ACTN1-219ENST00000556432 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.1■■□□□ 1.139e-8■□□□□ 9.2
ACTN1-219ENST00000556432 TMEM94Q12767 1356 aa22.1■■□□□ 1.13
ACTN1-219ENST00000556432 TMEM2Q9UHN6 1383 aa22.09■■□□□ 1.13
ACTN1-219ENST00000556432 KIF15Q9NS87 1388 aa22.08■■□□□ 1.12
ACTN1-219ENST00000556432 PIK3C2BO00750 1634 aa22.07■■□□□ 1.12
ACTN1-219ENST00000556432 ARHGAP31Q2M1Z3 1444 aa22.06■■□□□ 1.12
ACTN1-219ENST00000556432 MYOM3Q5VTT5 1437 aa22.06■■□□□ 1.12
ACTN1-219ENST00000556432 PRDM15P57071 1507 aaPredicted RBP22.06■■□□□ 1.12
ACTN1-219ENST00000556432 PROSER2Q86WR7 435 aaPredicted RBP22.06■■□□□ 1.12
ACTN1-219ENST00000556432 RBM33Q96EV2 1170 aaKnown RBP22.05■■□□□ 1.12
ACTN1-219ENST00000556432 RRP7BPQ9NSQ0 103 aa22.05■■□□□ 1.12
ACTN1-219ENST00000556432 ROBO1Q9Y6N7 1651 aa22.04■■□□□ 1.12
ACTN1-219ENST00000556432 KANK1Q14678 1352 aa22.04■■□□□ 1.12
ACTN1-219ENST00000556432 KCNA6P17658 529 aa22.03■■□□□ 1.12
ACTN1-219ENST00000556432 SLC26A8Q96RN1 970 aa22.03■■□□□ 1.12
ACTN1-219ENST00000556432 ERBINQ96RT1 1412 aa22.03■■□□□ 1.12
ACTN1-219ENST00000556432 EFCAB6Q5THR3 1501 aa22.02■■□□□ 1.12
ACTN1-219ENST00000556432 BCANQ96GW7 911 aa22.02■■□□□ 1.12
ACTN1-219ENST00000556432 VPS8Q8N3P4 1428 aa22.01■■□□□ 1.11
ACTN1-219ENST00000556432 KANK4Q5T7N3 995 aaPredicted RBP22.01■■□□□ 1.11
ACTN1-219ENST00000556432 MAP3K1Q13233 1512 aa21.99■■□□□ 1.11
ACTN1-219ENST00000556432 IDI1Q13907 227 aa21.98■■□□□ 1.11
ACTN1-219ENST00000556432 MSH6P52701 1360 aa21.98■■□□□ 1.11
ACTN1-219ENST00000556432 SETD1AO15047 1707 aaKnown RBP21.97■■□□□ 1.11
ACTN1-219ENST00000556432 NKTRP30414 1462 aaKnown RBP21.96■■□□□ 1.11
ACTN1-219ENST00000556432 ABCC5O15440 1437 aa21.95■■□□□ 1.1
ACTN1-219ENST00000556432 CROCC2H7BZ55 1655 aa21.95■■□□□ 1.1
ACTN1-219ENST00000556432 KDM5AP29375 1690 aaKnown RBP21.94■■□□□ 1.1
ACTN1-219ENST00000556432 PHLPP1O60346 1717 aa21.94■■□□□ 1.1
ACTN1-219ENST00000556432 JCADQ9P266 1359 aa21.93■■□□□ 1.1
ACTN1-219ENST00000556432 SLAIN2Q9P270 581 aa21.93■■□□□ 1.1
ACTN1-219ENST00000556432 TET3O43151 1660 aa21.92■■□□□ 1.1
ACTN1-219ENST00000556432 ADGRB3O60242 1522 aa21.91■■□□□ 1.1
ACTN1-219ENST00000556432 NWD1Q149M9 1564 aa21.91■■□□□ 1.1
ACTN1-219ENST00000556432 PTPN23Q9H3S7 1636 aa21.9■■□□□ 1.1
ACTN1-219ENST00000556432 DAPK1P53355 1430 aa21.89■■□□□ 1.1
ACTN1-219ENST00000556432 MEX3CQ5U5Q3 659 aaKnown RBP21.89■■□□□ 1.09
ACTN1-219ENST00000556432 CHIC2Q9UKJ5 165 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms