RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 KANK1Q14678 1352 aa18.48■□□□□ 0.55
SHMT2-221ENST00000555773 GCC2Q8IWJ2 1684 aa18.47■□□□□ 0.55
SHMT2-221ENST00000555773 NUP155O75694 1391 aa18.47■□□□□ 0.55
SHMT2-221ENST00000555773 MLECQ14165 292 aa18.47■□□□□ 0.55
SHMT2-221ENST00000555773 EIF2AK4Q9P2K8 1649 aaKnown RBP18.47■□□□□ 0.55
SHMT2-221ENST00000555773 WASHC2CQ9Y4E1 1318 aa18.46■□□□□ 0.55
SHMT2-221ENST00000555773 ESF1Q9H501 851 aaKnown RBP18.45■□□□□ 0.54
SHMT2-221ENST00000555773 BCORL1Q5H9F3 1711 aa18.43■□□□□ 0.54
SHMT2-221ENST00000555773 MPHOSPH9Q99550 1183 aa18.42■□□□□ 0.54
SHMT2-221ENST00000555773 SLC4A1APQ9BWU0 796 aaKnown RBP18.41■□□□□ 0.54
SHMT2-221ENST00000555773 RNF17Q9BXT8 1623 aaKnown RBP18.39■□□□□ 0.53
SHMT2-221ENST00000555773 PRDM15P57071 1507 aaPredicted RBP18.38■□□□□ 0.53
SHMT2-221ENST00000555773 KDM5DQ9BY66 1539 aa18.38■□□□□ 0.53
SHMT2-221ENST00000555773 FAM135AQ9P2D6 1515 aa18.38■□□□□ 0.53
SHMT2-221ENST00000555773 UNC13BO14795 1591 aa18.38■□□□□ 0.53
SHMT2-221ENST00000555773 DEPDC5O75140 1603 aa18.38■□□□□ 0.53
SHMT2-221ENST00000555773 CNTLNQ9NXG0 1405 aa18.37■□□□□ 0.53
SHMT2-221ENST00000555773 SIGLEC1Q9BZZ2 1709 aa18.37■□□□□ 0.53
SHMT2-221ENST00000555773 VWDEQ8N2E2 1590 aa18.36■□□□□ 0.53
SHMT2-221ENST00000555773 MROH1Q8NDA8 1641 aa18.35■□□□□ 0.53
SHMT2-221ENST00000555773 LMTK2Q8IWU2 1503 aa18.35■□□□□ 0.53
SHMT2-221ENST00000555773 PKD2Q13563 968 aa18.35■□□□□ 0.53
SHMT2-221ENST00000555773 PZPP20742 1482 aa18.33■□□□□ 0.53
SHMT2-221ENST00000555773 ZMYM3Q14202 1370 aa18.33■□□□□ 0.53
SHMT2-221ENST00000555773 ABCC3O15438 1527 aa18.33■□□□□ 0.52
SHMT2-221ENST00000555773 ARHGAP31Q2M1Z3 1444 aa18.32■□□□□ 0.52
SHMT2-221ENST00000555773 IQGAP3Q86VI3 1631 aa18.31■□□□□ 0.52
SHMT2-221ENST00000555773 DHX57Q6P158 1386 aaKnown RBP18.3■□□□□ 0.52
SHMT2-221ENST00000555773 RPRD2Q5VT52 1461 aaKnown RBP18.27■□□□□ 0.52
SHMT2-221ENST00000555773 KDM4FA0A1W2PPD8 638 aa18.27■□□□□ 0.52
SHMT2-221ENST00000555773 NPATQ14207 1427 aa18.26■□□□□ 0.51
SHMT2-221ENST00000555773 ADAMTSL3P82987 1691 aa18.26■□□□□ 0.51
SHMT2-221ENST00000555773 ZC3H13Q5T200 1668 aaKnown RBP18.26■□□□□ 0.51
SHMT2-221ENST00000555773 FOXD1Q16676 465 aa18.25■□□□□ 0.51
SHMT2-221ENST00000555773 CEBPAP49715 358 aaPredicted RBP18.24■□□□□ 0.51
SHMT2-221ENST00000555773 FBXO31Q5XUX0 539 aaPredicted RBP18.24■□□□□ 0.51
SHMT2-221ENST00000555773 CCER1Q8TC90 406 aaPredicted RBP18.24■□□□□ 0.51
SHMT2-221ENST00000555773 TET3O43151 1660 aa18.24■□□□□ 0.51
SHMT2-221ENST00000555773 EFCAB6Q5THR3 1501 aa18.23■□□□□ 0.51
SHMT2-221ENST00000555773 CLSPNQ9HAW4 1339 aa18.23■□□□□ 0.51
SHMT2-221ENST00000555773 PTPRTO14522 1441 aa18.22■□□□□ 0.51
SHMT2-221ENST00000555773 ANKRD30BQ9BXX2 1392 aa18.21■□□□□ 0.51
SHMT2-221ENST00000555773 SLC52A1Q9NWF4 448 aa18.21■□□□□ 0.51
SHMT2-221ENST00000555773 CLTCQ00610 1675 aaKnown RBP18.2■□□□□ 0.5
SHMT2-221ENST00000555773 NOS1P29475 1434 aa18.2■□□□□ 0.5
SHMT2-221ENST00000555773 MADDQ8WXG6 1647 aa18.2■□□□□ 0.5
SHMT2-221ENST00000555773 MROH2AA6NES4 1674 aa18.19■□□□□ 0.5
SHMT2-221ENST00000555773 CEP152O94986 1710 aa18.19■□□□□ 0.5
SHMT2-221ENST00000555773 CAMSAP1Q5T5Y3 1602 aa18.19■□□□□ 0.5
SHMT2-221ENST00000555773 PTPRMP28827 1452 aa18.19■□□□□ 0.5
SHMT2-221ENST00000555773 FER1L4A9Z1Z3 1794 aa18.18■□□□□ 0.5
SHMT2-221ENST00000555773 PLPPR3Q6T4P5 718 aa18.17■□□□□ 0.5
SHMT2-221ENST00000555773 ERVK-7P63135 1459 aa18.17■□□□□ 0.5
SHMT2-221ENST00000555773 PLA2R1Q13018 1463 aa18.17■□□□□ 0.5
SHMT2-221ENST00000555773 TNRQ92752 1358 aa18.17■□□□□ 0.5
SHMT2-221ENST00000555773 E9PCH4 1651 aa18.15■□□□□ 0.5
SHMT2-221ENST00000555773 IDI1Q13907 227 aa18.15■□□□□ 0.5
SHMT2-221ENST00000555773 CCDC144AA2RUR9 1427 aa18.14■□□□□ 0.49
SHMT2-221ENST00000555773 SPATA31D1Q6ZQQ2 1576 aa18.13■□□□□ 0.49
SHMT2-221ENST00000555773 RIMS1Q86UR5 1692 aaKnown RBP18.13■□□□□ 0.49
SHMT2-221ENST00000555773 TRPM2O94759 1503 aa18.1■□□□□ 0.49
SHMT2-221ENST00000555773 SIN3AQ96ST3 1273 aa18.1■□□□□ 0.49
SHMT2-221ENST00000555773 C3P01024 1663 aa18.09■□□□□ 0.49
SHMT2-221ENST00000555773 NEUROD1Q13562 356 aa18.09■□□□□ 0.49
SHMT2-221ENST00000555773 NLRP1Q9C000 1473 aa18.08■□□□□ 0.49
SHMT2-221ENST00000555773 STAG3Q9UJ98 1225 aa18.08■□□□□ 0.48
SHMT2-221ENST00000555773 PREX1Q8TCU6 1659 aa18.07■□□□□ 0.48
SHMT2-221ENST00000555773 TIMELESSQ9UNS1 1208 aa18.07■□□□□ 0.48
SHMT2-221ENST00000555773 CHGAP10645 457 aaKnown RBP18.06■□□□□ 0.48
SHMT2-221ENST00000555773 SETD1BQ9UPS6 1966 aaKnown RBP18.06■□□□□ 0.48
SHMT2-221ENST00000555773 SYNMO15061 1565 aa18.05■□□□□ 0.48
SHMT2-221ENST00000555773 THEMISQ8N1K5 641 aaPredicted RBP18.05■□□□□ 0.48
SHMT2-221ENST00000555773 SPHKAPQ2M3C7 1700 aa18.04■□□□□ 0.48
SHMT2-221ENST00000555773 CFAP65Q6ZU64 1925 aaKnown RBP18.04■□□□□ 0.48
SHMT2-221ENST00000555773 RPGRIP1LQ68CZ1 1315 aa18.02■□□□□ 0.48
SHMT2-221ENST00000555773 HDGFP51858 240 aaKnown RBP18.02■□□□□ 0.48
SHMT2-221ENST00000555773 RGL3Q3MIN7 710 aa18.02■□□□□ 0.48
SHMT2-221ENST00000555773 UHRF1BP1Q6BDS2 1440 aa18.02■□□□□ 0.48
SHMT2-221ENST00000555773 STAC3Q96MF2 364 aa18.02■□□□□ 0.48
SHMT2-221ENST00000555773 A2ML1A8K2U0 1454 aa18.01■□□□□ 0.47
SHMT2-221ENST00000555773 ZNF326Q5BKZ1 582 aaKnown RBP18.01■□□□□ 0.47
SHMT2-221ENST00000555773 UGGT1Q9NYU2 1555 aa18■□□□□ 0.47
SHMT2-221ENST00000555773 SPATA31E1Q6ZUB1 1445 aa18■□□□□ 0.47
SHMT2-221ENST00000555773 PIK3C2BO00750 1634 aa18■□□□□ 0.47
SHMT2-221ENST00000555773 CLTCL1P53675 1640 aa17.99■□□□□ 0.47
SHMT2-221ENST00000555773 AEBP2Q6ZN18 517 aaPredicted RBP17.99■□□□□ 0.47
SHMT2-221ENST00000555773 TONSLQ96HA7 1378 aa17.98■□□□□ 0.47
SHMT2-221ENST00000555773 NEURL4Q96JN8 1562 aa17.98■□□□□ 0.47
SHMT2-221ENST00000555773 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.97■□□□□ 0.47
SHMT2-221ENST00000555773 L3MBTL2Q969R5 705 aa17.97■□□□□ 0.47
SHMT2-221ENST00000555773 TMEM2Q9UHN6 1383 aa17.95■□□□□ 0.46
SHMT2-221ENST00000555773 VGFO15240 615 aaPredicted RBP17.95■□□□□ 0.46
SHMT2-221ENST00000555773 DCAF11Q8TEB1 546 aa17.95■□□□□ 0.46
SHMT2-221ENST00000555773 ADGRB3O60242 1522 aa17.94■□□□□ 0.46
SHMT2-221ENST00000555773 EID1Q9Y6B2 187 aa17.94■□□□□ 0.46
SHMT2-221ENST00000555773 CEP170BQ9Y4F5 1589 aaPredicted RBP17.93■□□□□ 0.46
SHMT2-221ENST00000555773 TMEM131LA2VDJ0 1609 aa17.93■□□□□ 0.46
SHMT2-221ENST00000555773 MYO3AQ8NEV4 1616 aa17.92■□□□□ 0.46
SHMT2-221ENST00000555773 ZEB1P37275 1124 aaPredicted RBP17.92■□□□□ 0.46
SHMT2-221ENST00000555773 TXNDC2Q86VQ3 553 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms