RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 CNTLNQ9NXG0 1405 aa21.75■■□□□ 1.07
SHMT2-217ENST00000555116 ERBINQ96RT1 1412 aa21.73■■□□□ 1.07
SHMT2-217ENST00000555116 PPP6R1Q9UPN7 881 aa21.73■■□□□ 1.07
SHMT2-217ENST00000555116 ESF1Q9H501 851 aaKnown RBP21.73■■□□□ 1.07
SHMT2-217ENST00000555116 MROH1Q8NDA8 1641 aa21.72■■□□□ 1.07
SHMT2-217ENST00000555116 CEBPAP49715 358 aaPredicted RBP21.71■■□□□ 1.07
SHMT2-217ENST00000555116 PLPPR3Q6T4P5 718 aa21.71■■□□□ 1.07
SHMT2-217ENST00000555116 FAM135AQ9P2D6 1515 aa21.7■■□□□ 1.06
SHMT2-217ENST00000555116 ROCK1Q13464 1354 aa21.7■■□□□ 1.06
SHMT2-217ENST00000555116 SETD1BQ9UPS6 1966 aaKnown RBP21.69■■□□□ 1.06
SHMT2-217ENST00000555116 ITGAEP38570 1179 aa21.69■■□□□ 1.06
SHMT2-217ENST00000555116 KDM5DQ9BY66 1539 aa21.68■■□□□ 1.06
SHMT2-217ENST00000555116 DEPDC5O75140 1603 aa21.67■■□□□ 1.06
SHMT2-217ENST00000555116 ZMYM3Q14202 1370 aa21.67■■□□□ 1.06
SHMT2-217ENST00000555116 PRDM15P57071 1507 aaPredicted RBP21.64■■□□□ 1.06
SHMT2-217ENST00000555116 ZC3H13Q5T200 1668 aaKnown RBP21.64■■□□□ 1.05
SHMT2-217ENST00000555116 CEP152O94986 1710 aa21.64■■□□□ 1.05
SHMT2-217ENST00000555116 ANKRD50Q9ULJ7 1429 aa21.64■■□□□ 1.05
SHMT2-217ENST00000555116 ABCC3O15438 1527 aa21.63■■□□□ 1.05
SHMT2-217ENST00000555116 WASHC2CQ9Y4E1 1318 aa21.62■■□□□ 1.05
SHMT2-217ENST00000555116 PREX1Q8TCU6 1659 aa21.62■■□□□ 1.05
SHMT2-217ENST00000555116 LMTK3Q96Q04 1460 aa21.6■■□□□ 1.05
SHMT2-217ENST00000555116 NPATQ14207 1427 aa21.59■■□□□ 1.05
SHMT2-217ENST00000555116 VWDEQ8N2E2 1590 aa21.58■■□□□ 1.05
SHMT2-217ENST00000555116 CAMSAP1Q5T5Y3 1602 aa21.58■■□□□ 1.04
SHMT2-217ENST00000555116 PZPP20742 1482 aa21.57■■□□□ 1.04
SHMT2-217ENST00000555116 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.56■■□□□ 1.04
SHMT2-217ENST00000555116 UNC13BO14795 1591 aa21.55■■□□□ 1.04
SHMT2-217ENST00000555116 CFAP65Q6ZU64 1925 aaKnown RBP21.55■■□□□ 1.04
SHMT2-217ENST00000555116 GCC2Q8IWJ2 1684 aa21.55■■□□□ 1.04
SHMT2-217ENST00000555116 KANK1Q14678 1352 aa21.54■■□□□ 1.04
SHMT2-217ENST00000555116 LMTK2Q8IWU2 1503 aa21.52■■□□□ 1.04
SHMT2-217ENST00000555116 NAIPQ13075 1403 aa21.52■■□□□ 1.04
SHMT2-217ENST00000555116 UHRF1BP1Q6BDS2 1440 aa21.52■■□□□ 1.04
SHMT2-217ENST00000555116 FBXO31Q5XUX0 539 aaPredicted RBP21.51■■□□□ 1.03
SHMT2-217ENST00000555116 MYO3AQ8NEV4 1616 aa21.51■■□□□ 1.03
SHMT2-217ENST00000555116 HFM1A2PYH4 1435 aa21.49■■□□□ 1.03
SHMT2-217ENST00000555116 ARHGAP31Q2M1Z3 1444 aa21.49■■□□□ 1.03
SHMT2-217ENST00000555116 SPATA31D1Q6ZQQ2 1576 aa21.48■■□□□ 1.03
SHMT2-217ENST00000555116 ZNF142P52746 1687 aaPredicted RBP21.48■■□□□ 1.03
SHMT2-217ENST00000555116 HSPA2P54652 639 aa21.47■■□□□ 1.03
SHMT2-217ENST00000555116 IQGAP3Q86VI3 1631 aa21.46■■□□□ 1.03
SHMT2-217ENST00000555116 TNRQ92752 1358 aa21.46■■□□□ 1.03
SHMT2-217ENST00000555116 ERVK-7P63135 1459 aa21.46■■□□□ 1.03
SHMT2-217ENST00000555116 TET3O43151 1660 aa21.46■■□□□ 1.03
SHMT2-217ENST00000555116 EFCAB6Q5THR3 1501 aa21.46■■□□□ 1.03
SHMT2-217ENST00000555116 CEP170BQ9Y4F5 1589 aaPredicted RBP21.44■■□□□ 1.02
SHMT2-217ENST00000555116 NUP155O75694 1391 aa21.41■■□□□ 1.02
SHMT2-217ENST00000555116 A2ML1A8K2U0 1454 aa21.41■■□□□ 1.02
SHMT2-217ENST00000555116 NLRP1Q9C000 1473 aa21.39■■□□□ 1.01
SHMT2-217ENST00000555116 E9PCH4 1651 aa21.39■■□□□ 1.01
SHMT2-217ENST00000555116 STRCQ7RTU9 1775 aa21.38■■□□□ 1.01
SHMT2-217ENST00000555116 RPRD2Q5VT52 1461 aaKnown RBP21.38■■□□□ 1.01
SHMT2-217ENST00000555116 NOS1P29475 1434 aa21.36■■□□□ 1.01
SHMT2-217ENST00000555116 SYNMO15061 1565 aa21.35■■□□□ 1.01
SHMT2-217ENST00000555116 UGGT1Q9NYU2 1555 aa21.31■■□□□ 1
SHMT2-217ENST00000555116 UBR1Q8IWV7 1749 aa21.31■■□□□ 1
SHMT2-217ENST00000555116 SETD5Q9C0A6 1442 aa21.31■■□□□ 1
SHMT2-217ENST00000555116 PLA2R1Q13018 1463 aa21.3■■□□□ 1
SHMT2-217ENST00000555116 PIK3C2BO00750 1634 aa21.3■■□□□ 1
SHMT2-217ENST00000555116 TRIM52Q96A61 297 aa21.28■■□□□ 1
SHMT2-217ENST00000555116 SPHKAPQ2M3C7 1700 aa21.26■□□□□ 0.99
SHMT2-217ENST00000555116 KDM5AP29375 1690 aaKnown RBP21.26■□□□□ 0.99
SHMT2-217ENST00000555116 IDI1Q13907 227 aa21.26■□□□□ 0.99
SHMT2-217ENST00000555116 POLR1AO95602 1720 aaPredicted RBP21.25■□□□□ 0.99
SHMT2-217ENST00000555116 THEMISQ8N1K5 641 aaPredicted RBP21.25■□□□□ 0.99
SHMT2-217ENST00000555116 SLC52A1Q9NWF4 448 aa21.24■□□□□ 0.99
SHMT2-217ENST00000555116 RAB3GAP2Q9H2M9 1393 aa21.23■□□□□ 0.99
SHMT2-217ENST00000555116 NCKAP5LQ9HCH0 1330 aa21.23■□□□□ 0.99
SHMT2-217ENST00000555116 MYO5BQ9ULV0 1848 aa21.23■□□□□ 0.99
SHMT2-217ENST00000555116 PTPRTO14522 1441 aa21.22■□□□□ 0.99
SHMT2-217ENST00000555116 PKD2Q13563 968 aa21.22■□□□□ 0.99
SHMT2-217ENST00000555116 ADGRB3O60242 1522 aa21.21■□□□□ 0.99
SHMT2-217ENST00000555116 SLC4A1APQ9BWU0 796 aaKnown RBP21.2■□□□□ 0.98
SHMT2-217ENST00000555116 DMRT2Q9Y5R5 561 aa21.2■□□□□ 0.98
SHMT2-217ENST00000555116 NEURL4Q96JN8 1562 aa21.2■□□□□ 0.98
SHMT2-217ENST00000555116 ACIN1Q9UKV3 1341 aaKnown RBP21.19■□□□□ 0.98
SHMT2-217ENST00000555116 ARHGAP23Q9P227 1491 aa21.19■□□□□ 0.98
SHMT2-217ENST00000555116 SLIT1O75093 1534 aa21.19■□□□□ 0.98
SHMT2-217ENST00000555116 TMEM131LA2VDJ0 1609 aa21.18■□□□□ 0.98
SHMT2-217ENST00000555116 TRPM2O94759 1503 aa21.17■□□□□ 0.98
SHMT2-217ENST00000555116 ANKLE2Q86XL3 938 aa21.16■□□□□ 0.98
SHMT2-217ENST00000555116 MPHOSPH9Q99550 1183 aa21.16■□□□□ 0.98
SHMT2-217ENST00000555116 STAG3Q9UJ98 1225 aa21.16■□□□□ 0.98
SHMT2-217ENST00000555116 CLTCL1P53675 1640 aa21.14■□□□□ 0.98
SHMT2-217ENST00000555116 TMEM2Q9UHN6 1383 aa21.14■□□□□ 0.98
SHMT2-217ENST00000555116 HRCP23327 699 aa21.14■□□□□ 0.97
SHMT2-217ENST00000555116 MED14O60244 1454 aa21.14■□□□□ 0.97
SHMT2-217ENST00000555116 SCAF11Q99590 1463 aaKnown RBP21.12■□□□□ 0.97
SHMT2-217ENST00000555116 IQGAP1P46940 1657 aa21.11■□□□□ 0.97
SHMT2-217ENST00000555116 LTKP29376 864 aa21.11■□□□□ 0.97
SHMT2-217ENST00000555116 FOXD1Q16676 465 aa21.11■□□□□ 0.97
SHMT2-217ENST00000555116 NPHP4O75161 1426 aaPredicted RBP21.11■□□□□ 0.97
SHMT2-217ENST00000555116 KIF1BO60333 1816 aa21.1■□□□□ 0.97
SHMT2-217ENST00000555116 TXNDC2Q86VQ3 553 aa21.09■□□□□ 0.97
SHMT2-217ENST00000555116 ZFYVE9O95405 1425 aa21.08■□□□□ 0.97
SHMT2-217ENST00000555116 CHGAP10645 457 aaKnown RBP21.08■□□□□ 0.97
SHMT2-217ENST00000555116 EID1Q9Y6B2 187 aa21.07■□□□□ 0.96
SHMT2-217ENST00000555116 TRIM26Q12899 539 aaPredicted RBP21.05■□□□□ 0.96
SHMT2-217ENST00000555116 RIMS2Q9UQ26 1411 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms