RNA–Protein interactions for RNA: ENST00000554600.5

SHMT2-213, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 837 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-213ENST00000554600 SHANK2Q9UPX8 1470 aa16.46■□□□□ 0.23
SHMT2-213ENST00000554600 UHRF1BP1Q6BDS2 1440 aa16.45■□□□□ 0.22
SHMT2-213ENST00000554600 EIF2AK4Q9P2K8 1649 aaKnown RBP16.45■□□□□ 0.22
SHMT2-213ENST00000554600 CHIC2Q9UKJ5 165 aa16.44■□□□□ 0.22
SHMT2-213ENST00000554600 DUOX2Q9NRD8 1548 aa16.44■□□□□ 0.22
SHMT2-213ENST00000554600 PPP6R1Q9UPN7 881 aa16.43■□□□□ 0.22
SHMT2-213ENST00000554600 RNF17Q9BXT8 1623 aaKnown RBP16.43■□□□□ 0.22
SHMT2-213ENST00000554600 CEP152O94986 1710 aa16.42■□□□□ 0.22
SHMT2-213ENST00000554600 KIF15Q9NS87 1388 aa16.42■□□□□ 0.22
SHMT2-213ENST00000554600 KDM5DQ9BY66 1539 aa16.42■□□□□ 0.22
SHMT2-213ENST00000554600 RRP7BPQ9NSQ0 103 aa16.42■□□□□ 0.22
SHMT2-213ENST00000554600 WASHC2CQ9Y4E1 1318 aa16.41■□□□□ 0.22
SHMT2-213ENST00000554600 NPATQ14207 1427 aa16.4■□□□□ 0.22
SHMT2-213ENST00000554600 ZC3H13Q5T200 1668 aaKnown RBP16.4■□□□□ 0.22
SHMT2-213ENST00000554600 FAM135AQ9P2D6 1515 aa16.4■□□□□ 0.22
SHMT2-213ENST00000554600 MYO3AQ8NEV4 1616 aa16.39■□□□□ 0.21
SHMT2-213ENST00000554600 ANKRD30AQ9BXX3 1397 aa16.38■□□□□ 0.21
SHMT2-213ENST00000554600 ILDR2Q71H61 639 aa16.38■□□□□ 0.21
SHMT2-213ENST00000554600 PTPRKQ15262 1439 aa16.37■□□□□ 0.21
SHMT2-213ENST00000554600 STRCQ7RTU9 1775 aa16.37■□□□□ 0.21
SHMT2-213ENST00000554600 MROH1Q8NDA8 1641 aa16.36■□□□□ 0.21
SHMT2-213ENST00000554600 ZNF142P52746 1687 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-213ENST00000554600 ERBINQ96RT1 1412 aa16.36■□□□□ 0.21
SHMT2-213ENST00000554600 CAMSAP1Q5T5Y3 1602 aa16.35■□□□□ 0.21
SHMT2-213ENST00000554600 ABCC3O15438 1527 aa16.35■□□□□ 0.21
SHMT2-213ENST00000554600 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.34■□□□□ 0.21
SHMT2-213ENST00000554600 CEP170BQ9Y4F5 1589 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-213ENST00000554600 ITGAEP38570 1179 aa16.33■□□□□ 0.2
SHMT2-213ENST00000554600 NCOA1Q15788 1441 aa16.33■□□□□ 0.2
SHMT2-213ENST00000554600 PZPP20742 1482 aa16.33■□□□□ 0.2
SHMT2-213ENST00000554600 DEPDC5O75140 1603 aa16.32■□□□□ 0.2
SHMT2-213ENST00000554600 ADGRL2O95490 1459 aa16.32■□□□□ 0.2
SHMT2-213ENST00000554600 FBXO31Q5XUX0 539 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-213ENST00000554600 DISP3Q9P2K9 1392 aa16.32■□□□□ 0.2
SHMT2-213ENST00000554600 PRDM15P57071 1507 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-213ENST00000554600 CERKQ8TCT0 537 aa16.31■□□□□ 0.2
SHMT2-213ENST00000554600 KANK1Q14678 1352 aa16.3■□□□□ 0.2
SHMT2-213ENST00000554600 TNRQ92752 1358 aa16.3■□□□□ 0.2
SHMT2-213ENST00000554600 DMRT2Q9Y5R5 561 aa16.27■□□□□ 0.2
SHMT2-213ENST00000554600 A2ML1A8K2U0 1454 aa16.27■□□□□ 0.19
SHMT2-213ENST00000554600 ANKRD50Q9ULJ7 1429 aa16.27■□□□□ 0.19
SHMT2-213ENST00000554600 POLR1AO95602 1720 aaPredicted RBP16.25■□□□□ 0.19
SHMT2-213ENST00000554600 ERVK-7P63135 1459 aa16.24■□□□□ 0.19
SHMT2-213ENST00000554600 SPATA31D1Q6ZQQ2 1576 aa16.24■□□□□ 0.19
SHMT2-213ENST00000554600 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.24■□□□□ 0.19
SHMT2-213ENST00000554600 NLRP1Q9C000 1473 aa16.22■□□□□ 0.19
SHMT2-213ENST00000554600 NCKAP5LQ9HCH0 1330 aa16.22■□□□□ 0.19
SHMT2-213ENST00000554600 ROCK1Q13464 1354 aa16.22■□□□□ 0.19
SHMT2-213ENST00000554600 RRBP1Q9P2E9 1410 aaKnown RBP16.21■□□□□ 0.19
SHMT2-213ENST00000554600 UNC13BO14795 1591 aa16.21■□□□□ 0.18
SHMT2-213ENST00000554600 VWDEQ8N2E2 1590 aa16.21■□□□□ 0.18
SHMT2-213ENST00000554600 UGGT1Q9NYU2 1555 aa16.21■□□□□ 0.18
SHMT2-213ENST00000554600 GCC2Q8IWJ2 1684 aa16.21■□□□□ 0.18
SHMT2-213ENST00000554600 PLA2R1Q13018 1463 aa16.2■□□□□ 0.18
SHMT2-213ENST00000554600 PTPRTO14522 1441 aa16.19■□□□□ 0.18
SHMT2-213ENST00000554600 TET3O43151 1660 aa16.19■□□□□ 0.18
SHMT2-213ENST00000554600 UBR1Q8IWV7 1749 aa16.19■□□□□ 0.18
SHMT2-213ENST00000554600 EFCAB6Q5THR3 1501 aa16.19■□□□□ 0.18
SHMT2-213ENST00000554600 LMTK2Q8IWU2 1503 aa16.19■□□□□ 0.18
SHMT2-213ENST00000554600 ARHGAP31Q2M1Z3 1444 aa16.19■□□□□ 0.18
SHMT2-213ENST00000554600 PKD2Q13563 968 aa16.17■□□□□ 0.18
SHMT2-213ENST00000554600 THEMISQ8N1K5 641 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-213ENST00000554600 PIK3C2BO00750 1634 aa16.16■□□□□ 0.18
SHMT2-213ENST00000554600 IQGAP3Q86VI3 1631 aa16.15■□□□□ 0.18
SHMT2-213ENST00000554600 MYO5BQ9ULV0 1848 aa16.14■□□□□ 0.17
SHMT2-213ENST00000554600 E9PCH4 1651 aa16.14■□□□□ 0.17
SHMT2-213ENST00000554600 ANKLE2Q86XL3 938 aa16.13■□□□□ 0.17
SHMT2-213ENST00000554600 STAG3Q9UJ98 1225 aa16.13■□□□□ 0.17
SHMT2-213ENST00000554600 SYNMO15061 1565 aa16.13■□□□□ 0.17
SHMT2-213ENST00000554600 NEURL4Q96JN8 1562 aa16.12■□□□□ 0.17
SHMT2-213ENST00000554600 NUP155O75694 1391 aa16.12■□□□□ 0.17
SHMT2-213ENST00000554600 IQGAP1P46940 1657 aa16.11■□□□□ 0.17
SHMT2-213ENST00000554600 RPRD2Q5VT52 1461 aaKnown RBP16.1■□□□□ 0.17
SHMT2-213ENST00000554600 KDM5AP29375 1690 aaKnown RBP16.08■□□□□ 0.17
SHMT2-213ENST00000554600 NOS1P29475 1434 aa16.08■□□□□ 0.16
SHMT2-213ENST00000554600 ZNF335Q9H4Z2 1342 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-213ENST00000554600 NPHP4O75161 1426 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-213ENST00000554600 NAIPQ13075 1403 aa16.07■□□□□ 0.16
SHMT2-213ENST00000554600 LTBP4Q8N2S1 1624 aa16.07■□□□□ 0.16
SHMT2-213ENST00000554600 SPHKAPQ2M3C7 1700 aa16.06■□□□□ 0.16
SHMT2-213ENST00000554600 IDI1Q13907 227 aa16.06■□□□□ 0.16
SHMT2-213ENST00000554600 ADGRB3O60242 1522 aa16.05■□□□□ 0.16
SHMT2-213ENST00000554600 SCAF11Q99590 1463 aaKnown RBP16.04■□□□□ 0.16
SHMT2-213ENST00000554600 TXNDC2Q86VQ3 553 aa16.04■□□□□ 0.16
SHMT2-213ENST00000554600 TRIM52Q96A61 297 aa16.04■□□□□ 0.16
SHMT2-213ENST00000554600 SLC52A1Q9NWF4 448 aa16.04■□□□□ 0.16
SHMT2-213ENST00000554600 EID1Q9Y6B2 187 aa16.04■□□□□ 0.16
SHMT2-213ENST00000554600 SLIT1O75093 1534 aa16.04■□□□□ 0.16
SHMT2-213ENST00000554600 MED14O60244 1454 aa16.03■□□□□ 0.16
SHMT2-213ENST00000554600 CHGAP10645 457 aaKnown RBP16.03■□□□□ 0.16
SHMT2-213ENST00000554600 HFM1A2PYH4 1435 aa16.02■□□□□ 0.16
SHMT2-213ENST00000554600 ARHGAP23Q9P227 1491 aa16.02■□□□□ 0.15
SHMT2-213ENST00000554600 TMEM2Q9UHN6 1383 aa16■□□□□ 0.15
SHMT2-213ENST00000554600 LTKP29376 864 aa16■□□□□ 0.15
SHMT2-213ENST00000554600 TMEM131LA2VDJ0 1609 aa16■□□□□ 0.15
SHMT2-213ENST00000554600 STRCP1A6NGW2 1772 aa15.99■□□□□ 0.15
SHMT2-213ENST00000554600 KIF1BO60333 1816 aa15.98■□□□□ 0.15
SHMT2-213ENST00000554600 BCANQ96GW7 911 aa15.98■□□□□ 0.15
SHMT2-213ENST00000554600 SENP3Q9H4L4 574 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-213ENST00000554600 IQSEC2Q5JU85 1478 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms