RNA–Protein interactions for RNA: ENST00000550208.1

BRF1-216, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 3

Gene BRF1, Length 1,040 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-216ENST00000550208 ROCK1Q13464 1354 aa34.21■■■■□ 3.07
BRF1-216ENST00000550208 ERBINQ96RT1 1412 aa34.19■■■■□ 3.06
BRF1-216ENST00000550208 EIF2AK4Q9P2K8 1649 aaKnown RBP34.16■■■■□ 3.06
BRF1-216ENST00000550208 CNTLNQ9NXG0 1405 aa34.15■■■■□ 3.06
BRF1-216ENST00000550208 WASHC2CQ9Y4E1 1318 aa34.13■■■■□ 3.05
BRF1-216ENST00000550208 ANKRD50Q9ULJ7 1429 aa34.13■■■■□ 3.05
BRF1-216ENST00000550208 ZMYM3Q14202 1370 aa34.12■■■■□ 3.05
BRF1-216ENST00000550208 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.12■■■■□ 3.05
BRF1-216ENST00000550208 CLTCQ00610 1675 aaKnown RBP34.11■■■■□ 3.05
BRF1-216ENST00000550208 RNF17Q9BXT8 1623 aaKnown RBP34.11■■■■□ 3.05
BRF1-216ENST00000550208 MROH1Q8NDA8 1641 aa34.06■■■■□ 3.04
BRF1-216ENST00000550208 C3P01024 1663 aa34.05■■■■□ 3.04
BRF1-216ENST00000550208 MROH2AA6NES4 1674 aa34.03■■■■□ 3.04
BRF1-216ENST00000550208 KDM5DQ9BY66 1539 aa34.02■■■■□ 3.04
BRF1-216ENST00000550208 FAM135AQ9P2D6 1515 aa33.99■■■■□ 3.03
BRF1-216ENST00000550208 ABCC3O15438 1527 aa33.98■■■■□ 3.03
BRF1-216ENST00000550208 DEPDC5O75140 1603 aa33.97■■■■□ 3.03
BRF1-216ENST00000550208 NAIPQ13075 1403 aa33.97■■■■□ 3.03
BRF1-216ENST00000550208 KANK1Q14678 1352 aa33.97■■■■□ 3.03
BRF1-216ENST00000550208 PRDM15P57071 1507 aaPredicted RBP33.96■■■■□ 3.03
BRF1-216ENST00000550208 FBXO31Q5XUX0 539 aaPredicted RBP33.95■■■■□ 3.03
BRF1-216ENST00000550208 CEP152O94986 1710 aa33.92■■■■□ 3.02
BRF1-216ENST00000550208 HFM1A2PYH4 1435 aa33.9■■■■□ 3.02
BRF1-216ENST00000550208 SETD1BQ9UPS6 1966 aaKnown RBP33.89■■■■□ 3.02
BRF1-216ENST00000550208 ZC3H13Q5T200 1668 aaKnown RBP33.89■■■■□ 3.02
BRF1-216ENST00000550208 VWDEQ8N2E2 1590 aa33.89■■■■□ 3.02
BRF1-216ENST00000550208 NPATQ14207 1427 aa33.87■■■■□ 3.01
BRF1-216ENST00000550208 PZPP20742 1482 aa33.87■■■■□ 3.01
BRF1-216ENST00000550208 UNC13BO14795 1591 aa33.84■■■■□ 3.01
BRF1-216ENST00000550208 NUP155O75694 1391 aa33.84■■■■□ 3.01
BRF1-216ENST00000550208 GCC2Q8IWJ2 1684 aa33.84■■■■□ 3.01
BRF1-216ENST00000550208 LMTK2Q8IWU2 1503 aa33.83■■■■□ 3.01
BRF1-216ENST00000550208 CAMSAP1Q5T5Y3 1602 aa33.82■■■■□ 3.01
BRF1-216ENST00000550208 LMTK3Q96Q04 1460 aa33.81■■■■□ 3
BRF1-216ENST00000550208 ARHGAP31Q2M1Z3 1444 aa33.79■■■■□ 3
BRF1-216ENST00000550208 CFAP65Q6ZU64 1925 aaKnown RBP33.79■■■■□ 3
BRF1-216ENST00000550208 HSPA2P54652 639 aa33.78■■■■□ 3
BRF1-216ENST00000550208 UHRF1BP1Q6BDS2 1440 aa33.78■■■■□ 3
BRF1-216ENST00000550208 PREX1Q8TCU6 1659 aa33.77■■■■□ 3
BRF1-216ENST00000550208 TNRQ92752 1358 aa33.77■■■■□ 3
BRF1-216ENST00000550208 TRIM52Q96A61 297 aa33.75■■■□□ 2.99
BRF1-216ENST00000550208 ERVK-7P63135 1459 aa33.72■■■□□ 2.99
BRF1-216ENST00000550208 SETD5Q9C0A6 1442 aa33.71■■■□□ 2.99
BRF1-216ENST00000550208 IQGAP3Q86VI3 1631 aa33.71■■■□□ 2.99
BRF1-216ENST00000550208 EFCAB6Q5THR3 1501 aa33.69■■■□□ 2.98
BRF1-216ENST00000550208 SPATA31D1Q6ZQQ2 1576 aa33.69■■■□□ 2.98
BRF1-216ENST00000550208 TET3O43151 1660 aa33.68■■■□□ 2.98
BRF1-216ENST00000550208 MYO3AQ8NEV4 1616 aa33.65■■■□□ 2.98
BRF1-216ENST00000550208 A2ML1A8K2U0 1454 aa33.6■■■□□ 2.97
BRF1-216ENST00000550208 RPRD2Q5VT52 1461 aaKnown RBP33.6■■■□□ 2.97
BRF1-216ENST00000550208 NOS1P29475 1434 aa33.6■■■□□ 2.97
BRF1-216ENST00000550208 RAB3GAP2Q9H2M9 1393 aa33.6■■■□□ 2.97
BRF1-216ENST00000550208 CEP170BQ9Y4F5 1589 aaPredicted RBP33.59■■■□□ 2.97
BRF1-216ENST00000550208 E9PCH4 1651 aa33.58■■■□□ 2.97
BRF1-216ENST00000550208 NLRP1Q9C000 1473 aa33.58■■■□□ 2.97
BRF1-216ENST00000550208 SLC4A1APQ9BWU0 796 aaKnown RBP33.57■■■□□ 2.96
BRF1-216ENST00000550208 IDI1Q13907 227 aa33.56■■■□□ 2.96
BRF1-216ENST00000550208 ZNF142P52746 1687 aaPredicted RBP33.55■■■□□ 2.96
BRF1-216ENST00000550208 PKD2Q13563 968 aa33.54■■■□□ 2.96
BRF1-216ENST00000550208 TRIM26Q12899 539 aaPredicted RBP33.53■■■□□ 2.96
BRF1-216ENST00000550208 SYNMO15061 1565 aa33.52■■■□□ 2.96
BRF1-216ENST00000550208 ACIN1Q9UKV3 1341 aaKnown RBP33.52■■■□□ 2.96
BRF1-216ENST00000550208 THEMISQ8N1K5 641 aaPredicted RBP33.51■■■□□ 2.95
BRF1-216ENST00000550208 MPHOSPH9Q99550 1183 aa33.51■■■□□ 2.95
BRF1-216ENST00000550208 SLC52A1Q9NWF4 448 aa33.5■■■□□ 2.95
BRF1-216ENST00000550208 HRCP23327 699 aa33.49■■■□□ 2.95
BRF1-216ENST00000550208 UGGT1Q9NYU2 1555 aa33.47■■■□□ 2.95
BRF1-216ENST00000550208 FOXD1Q16676 465 aa33.45■■■□□ 2.95
BRF1-216ENST00000550208 STAG3Q9UJ98 1225 aa33.45■■■□□ 2.95
BRF1-216ENST00000550208 NCKAP5LQ9HCH0 1330 aa33.45■■■□□ 2.95
BRF1-216ENST00000550208 PIK3C2BO00750 1634 aa33.42■■■□□ 2.94
BRF1-216ENST00000550208 STRCQ7RTU9 1775 aa33.42■■■□□ 2.94
BRF1-216ENST00000550208 PTPRTO14522 1441 aa33.42■■■□□ 2.94
BRF1-216ENST00000550208 UBR1Q8IWV7 1749 aa33.39■■■□□ 2.94
BRF1-216ENST00000550208 PLA2R1Q13018 1463 aa33.38■■■□□ 2.93
BRF1-216ENST00000550208 CHGAP10645 457 aaKnown RBP33.36■■■□□ 2.93
BRF1-216ENST00000550208 ANKLE2Q86XL3 938 aa33.36■■■□□ 2.93
BRF1-216ENST00000550208 SPHKAPQ2M3C7 1700 aa33.35■■■□□ 2.93
BRF1-216ENST00000550208 DMRT2Q9Y5R5 561 aa33.34■■■□□ 2.93
BRF1-216ENST00000550208 ADGRB3O60242 1522 aa33.28■■■□□ 2.92
BRF1-216ENST00000550208 LTKP29376 864 aa33.28■■■□□ 2.92
BRF1-216ENST00000550208 TXNDC2Q86VQ3 553 aa33.28■■■□□ 2.92
BRF1-216ENST00000550208 TMEM2Q9UHN6 1383 aa33.28■■■□□ 2.92
BRF1-216ENST00000550208 TRPM2O94759 1503 aa33.28■■■□□ 2.92
BRF1-216ENST00000550208 KDM5AP29375 1690 aaKnown RBP33.26■■■□□ 2.92
BRF1-216ENST00000550208 ARHGAP23Q9P227 1491 aa33.26■■■□□ 2.92
BRF1-216ENST00000550208 TMEM131LA2VDJ0 1609 aa33.26■■■□□ 2.91
BRF1-216ENST00000550208 SLIT1O75093 1534 aa33.25■■■□□ 2.91
BRF1-216ENST00000550208 EID1Q9Y6B2 187 aa33.23■■■□□ 2.91
BRF1-216ENST00000550208 CLTCL1P53675 1640 aa33.23■■■□□ 2.91
BRF1-216ENST00000550208 MYO5BQ9ULV0 1848 aa33.23■■■□□ 2.91
BRF1-216ENST00000550208 NEURL4Q96JN8 1562 aa33.19■■■□□ 2.9
BRF1-216ENST00000550208 POLR1AO95602 1720 aaPredicted RBP33.18■■■□□ 2.9
BRF1-216ENST00000550208 SCAF11Q99590 1463 aaKnown RBP33.18■■■□□ 2.9
BRF1-216ENST00000550208 NPHP4O75161 1426 aaPredicted RBP33.17■■■□□ 2.9
BRF1-216ENST00000550208 RIMS2Q9UQ26 1411 aa33.16■■■□□ 2.9
BRF1-216ENST00000550208 MED14O60244 1454 aa33.16■■■□□ 2.9
BRF1-216ENST00000550208 ZNF326Q5BKZ1 582 aaKnown RBP33.15■■■□□ 2.9
BRF1-216ENST00000550208 NUTM2DQ5VT03 806 aaPredicted RBP33.15■■■□□ 2.9
BRF1-216ENST00000550208 HDGFP51858 240 aaKnown RBP33.14■■■□□ 2.9
Retrieved 100 of 20,778 RNA–protein pairs in 110.3 ms