RNA–Protein interactions for RNA: ENST00000547247.5

SMARCD1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 1 (best)

Gene SMARCD1, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-203ENST00000547247 FER1L4A9Z1Z3 1794 aa34.84■■■■□ 3.17
SMARCD1-203ENST00000547247 RIMS1Q86UR5 1692 aaKnown RBP34.83■■■■□ 3.17
SMARCD1-203ENST00000547247 GCC2Q8IWJ2 1684 aa34.8■■■■□ 3.16
SMARCD1-203ENST00000547247 RNF17Q9BXT8 1623 aaKnown RBP34.78■■■■□ 3.16
SMARCD1-203ENST00000547247 PTPRMP28827 1452 aa34.77■■■■□ 3.16
SMARCD1-203ENST00000547247 PPP6R1Q9UPN7 881 aa34.77■■■■□ 3.16
SMARCD1-203ENST00000547247 ESF1Q9H501 851 aaKnown RBP34.74■■■■□ 3.15
SMARCD1-203ENST00000547247 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.71■■■■□ 3.158e-8■■□□□ 12.8
SMARCD1-203ENST00000547247 DEPDC5O75140 1603 aa34.71■■■■□ 3.15
SMARCD1-203ENST00000547247 MROH1Q8NDA8 1641 aa34.7■■■■□ 3.15
SMARCD1-203ENST00000547247 SETD5Q9C0A6 1442 aa34.69■■■■□ 3.14
SMARCD1-203ENST00000547247 PRDM15P57071 1507 aaPredicted RBP34.68■■■■□ 3.14
SMARCD1-203ENST00000547247 WASHC2CQ9Y4E1 1318 aa34.67■■■■□ 3.14
SMARCD1-203ENST00000547247 KANK1Q14678 1352 aa34.67■■■■□ 3.14
SMARCD1-203ENST00000547247 CNTLNQ9NXG0 1405 aa34.66■■■■□ 3.14
SMARCD1-203ENST00000547247 FAM135AQ9P2D6 1515 aa34.65■■■■□ 3.14
SMARCD1-203ENST00000547247 UNC13BO14795 1591 aa34.63■■■■□ 3.13
SMARCD1-203ENST00000547247 KDM5DQ9BY66 1539 aa34.63■■■■□ 3.13
SMARCD1-203ENST00000547247 CLTCQ00610 1675 aaKnown RBP34.6■■■■□ 3.13
SMARCD1-203ENST00000547247 PLPPR3Q6T4P5 718 aa34.6■■■■□ 3.13
SMARCD1-203ENST00000547247 ZC3H13Q5T200 1668 aaKnown RBP34.58■■■■□ 3.13
SMARCD1-203ENST00000547247 ABCC3O15438 1527 aa34.58■■■■□ 3.13
SMARCD1-203ENST00000547247 VWDEQ8N2E2 1590 aa34.58■■■■□ 3.13
SMARCD1-203ENST00000547247 NUP155O75694 1391 aa34.57■■■■□ 3.13
SMARCD1-203ENST00000547247 RAB3GAP2Q9H2M9 1393 aa34.57■■■■□ 3.12
SMARCD1-203ENST00000547247 MROH2AA6NES4 1674 aa34.55■■■■□ 3.12
SMARCD1-203ENST00000547247 ZMYM3Q14202 1370 aa34.54■■■■□ 3.12
SMARCD1-203ENST00000547247 C3P01024 1663 aa34.54■■■■□ 3.12
SMARCD1-203ENST00000547247 TRIM52Q96A61 297 aa34.54■■■■□ 3.12
SMARCD1-203ENST00000547247 ACIN1Q9UKV3 1341 aaKnown RBP34.54■■■■□ 3.12
SMARCD1-203ENST00000547247 CEP152O94986 1710 aa34.54■■■■□ 3.12
SMARCD1-203ENST00000547247 LMTK2Q8IWU2 1503 aa34.51■■■■□ 3.12
SMARCD1-203ENST00000547247 CEBPAP49715 358 aaPredicted RBP34.51■■■■□ 3.12
SMARCD1-203ENST00000547247 IQGAP3Q86VI3 1631 aa34.5■■■■□ 3.11
SMARCD1-203ENST00000547247 HRCP23327 699 aa34.49■■■■□ 3.11
SMARCD1-203ENST00000547247 CAMSAP1Q5T5Y3 1602 aa34.46■■■■□ 3.11
SMARCD1-203ENST00000547247 PCGF6Q9BYE7 350 aa34.45■■■■□ 3.11
SMARCD1-203ENST00000547247 ARHGAP31Q2M1Z3 1444 aa34.42■■■■□ 3.1
SMARCD1-203ENST00000547247 TET3O43151 1660 aa34.42■■■■□ 3.1
SMARCD1-203ENST00000547247 PZPP20742 1482 aa34.41■■■■□ 3.1
SMARCD1-203ENST00000547247 EFCAB6Q5THR3 1501 aa34.4■■■■□ 3.1
SMARCD1-203ENST00000547247 NPATQ14207 1427 aa34.38■■■■□ 3.09
SMARCD1-203ENST00000547247 SLC4A1APQ9BWU0 796 aaKnown RBP34.37■■■■□ 3.09
SMARCD1-203ENST00000547247 FBXO31Q5XUX0 539 aaPredicted RBP34.35■■■■□ 3.09
SMARCD1-203ENST00000547247 SETD1BQ9UPS6 1966 aaKnown RBP34.34■■■■□ 3.09
SMARCD1-203ENST00000547247 PREX1Q8TCU6 1659 aa34.33■■■■□ 3.09
SMARCD1-203ENST00000547247 RPRD2Q5VT52 1461 aaKnown RBP34.33■■■■□ 3.09
SMARCD1-203ENST00000547247 MPHOSPH9Q99550 1183 aa34.32■■■■□ 3.08
SMARCD1-203ENST00000547247 LMTK3Q96Q04 1460 aa34.31■■■■□ 3.08
SMARCD1-203ENST00000547247 E9PCH4 1651 aa34.3■■■■□ 3.08
SMARCD1-203ENST00000547247 PKD2Q13563 968 aa34.29■■■■□ 3.08
SMARCD1-203ENST00000547247 CFAP65Q6ZU64 1925 aaKnown RBP34.29■■■■□ 3.08
SMARCD1-203ENST00000547247 ERVK-7P63135 1459 aa34.28■■■■□ 3.08
SMARCD1-203ENST00000547247 SPATA31D1Q6ZQQ2 1576 aa34.26■■■■□ 3.08
SMARCD1-203ENST00000547247 TNRQ92752 1358 aa34.24■■■■□ 3.07
SMARCD1-203ENST00000547247 UHRF1BP1Q6BDS2 1440 aa34.22■■■■□ 3.07
SMARCD1-203ENST00000547247 NOS1P29475 1434 aa34.22■■■■□ 3.07
SMARCD1-203ENST00000547247 MYO3AQ8NEV4 1616 aa34.17■■■■□ 3.06
SMARCD1-203ENST00000547247 FOXD1Q16676 465 aa34.15■■■■□ 3.06
SMARCD1-203ENST00000547247 HSPA2P54652 639 aa34.15■■■■□ 3.06
SMARCD1-203ENST00000547247 PTPRTO14522 1441 aa34.13■■■■□ 3.05
SMARCD1-203ENST00000547247 SYNMO15061 1565 aa34.13■■■■□ 3.05
SMARCD1-203ENST00000547247 SPHKAPQ2M3C7 1700 aa34.12■■■■□ 3.05
SMARCD1-203ENST00000547247 NLRP1Q9C000 1473 aa34.11■■■■□ 3.05
SMARCD1-203ENST00000547247 SLC52A1Q9NWF4 448 aa34.11■■■■□ 3.05
SMARCD1-203ENST00000547247 ZNF142P52746 1687 aaPredicted RBP34.09■■■■□ 3.05
SMARCD1-203ENST00000547247 IDI1Q13907 227 aa34.06■■■■□ 3.04
SMARCD1-203ENST00000547247 CEP170BQ9Y4F5 1589 aaPredicted RBP34.06■■■■□ 3.04
SMARCD1-203ENST00000547247 PLA2R1Q13018 1463 aa34.06■■■■□ 3.04
SMARCD1-203ENST00000547247 TRPM2O94759 1503 aa34.05■■■■□ 3.04
SMARCD1-203ENST00000547247 A2ML1A8K2U0 1454 aa34.05■■■■□ 3.04
SMARCD1-203ENST00000547247 UGGT1Q9NYU2 1555 aa34.01■■■■□ 3.04
SMARCD1-203ENST00000547247 PIK3C2BO00750 1634 aa34.01■■■■□ 3.03
SMARCD1-203ENST00000547247 DHX57Q6P158 1386 aaKnown RBP34■■■■□ 3.03
SMARCD1-203ENST00000547247 STAG3Q9UJ98 1225 aa33.98■■■■□ 3.03
SMARCD1-203ENST00000547247 ANKRD30BQ9BXX2 1392 aa33.97■■■■□ 3.03
SMARCD1-203ENST00000547247 CLTCL1P53675 1640 aa33.95■■■■□ 3.03
SMARCD1-203ENST00000547247 CCDC144AA2RUR9 1427 aa33.95■■■■□ 3.03
SMARCD1-203ENST00000547247 THEMISQ8N1K5 641 aaPredicted RBP33.94■■■■□ 3.02
SMARCD1-203ENST00000547247 CHGAP10645 457 aaKnown RBP33.92■■■■□ 3.02
SMARCD1-203ENST00000547247 STRCQ7RTU9 1775 aa33.92■■■■□ 3.02
SMARCD1-203ENST00000547247 UBR1Q8IWV7 1749 aa33.91■■■■□ 3.02
SMARCD1-203ENST00000547247 ADGRB3O60242 1522 aa33.91■■■■□ 3.02
SMARCD1-203ENST00000547247 KDM5AP29375 1690 aaKnown RBP33.9■■■■□ 3.02
SMARCD1-203ENST00000547247 TMEM131LA2VDJ0 1609 aa33.87■■■■□ 3.01
SMARCD1-203ENST00000547247 KIF1BO60333 1816 aa33.84■■■■□ 3.01
SMARCD1-203ENST00000547247 MYO5BQ9ULV0 1848 aa33.8■■■■□ 3
SMARCD1-203ENST00000547247 TMEM2Q9UHN6 1383 aa33.79■■■■□ 3
SMARCD1-203ENST00000547247 ZNF326Q5BKZ1 582 aaKnown RBP33.77■■■■□ 3
SMARCD1-203ENST00000547247 SLIT1O75093 1534 aa33.77■■■■□ 3
SMARCD1-203ENST00000547247 ARHGAP23Q9P227 1491 aa33.76■■■□□ 2.99
SMARCD1-203ENST00000547247 ANKLE2Q86XL3 938 aa33.75■■■□□ 2.99
SMARCD1-203ENST00000547247 POLR1AO95602 1720 aaPredicted RBP33.75■■■□□ 2.99
SMARCD1-203ENST00000547247 SPATA31E1Q6ZUB1 1445 aa33.74■■■□□ 2.99
SMARCD1-203ENST00000547247 NCKAP5LQ9HCH0 1330 aa33.74■■■□□ 2.99
SMARCD1-203ENST00000547247 EID1Q9Y6B2 187 aa33.72■■■□□ 2.99
SMARCD1-203ENST00000547247 HDGFP51858 240 aaKnown RBP33.72■■■□□ 2.99
SMARCD1-203ENST00000547247 RGL3Q3MIN7 710 aa33.72■■■□□ 2.99
SMARCD1-203ENST00000547247 NEURL4Q96JN8 1562 aa33.72■■■□□ 2.99
SMARCD1-203ENST00000547247 TXNDC2Q86VQ3 553 aa33.71■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms