RNA–Protein interactions for RNA: ENST00000545432.5

RTN3-214, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-214ENST00000545432 SHANK2Q9UPX8 1470 aa23.98■■□□□ 1.43
RTN3-214ENST00000545432 FAM135AQ9P2D6 1515 aa23.98■■□□□ 1.43
RTN3-214ENST00000545432 NEURL4Q96JN8 1562 aa23.98■■□□□ 1.43
RTN3-214ENST00000545432 TNRQ92752 1358 aa23.97■■□□□ 1.43
RTN3-214ENST00000545432 PZPP20742 1482 aa23.95■■□□□ 1.42
RTN3-214ENST00000545432 TIAM1Q13009 1591 aa23.95■■□□□ 1.42
RTN3-214ENST00000545432 RSPH4AQ5TD94 716 aa23.94■■□□□ 1.42
RTN3-214ENST00000545432 MED14O60244 1454 aa23.94■■□□□ 1.42
RTN3-214ENST00000545432 CEP162Q5TB80 1403 aa23.93■■□□□ 1.42
RTN3-214ENST00000545432 ANKLE2Q86XL3 938 aa23.93■■□□□ 1.42
RTN3-214ENST00000545432 MIA2Q96PC5 1412 aa23.93■■□□□ 1.42
RTN3-214ENST00000545432 KIF3BO15066 747 aa23.92■■□□□ 1.42
RTN3-214ENST00000545432 THEMISQ8N1K5 641 aaPredicted RBP23.92■■□□□ 1.42
RTN3-214ENST00000545432 MED1Q15648 1581 aaPredicted RBP23.91■■□□□ 1.42
RTN3-214ENST00000545432 VWDEQ8N2E2 1590 aa23.9■■□□□ 1.42
RTN3-214ENST00000545432 NLRP1Q9C000 1473 aa23.89■■□□□ 1.42
RTN3-214ENST00000545432 PIP4K2BP78356 416 aa23.89■■□□□ 1.41
RTN3-214ENST00000545432 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.89■■□□□ 1.41
RTN3-214ENST00000545432 KDM5DQ9BY66 1539 aa23.89■■□□□ 1.41
RTN3-214ENST00000545432 ALKQ9UM73 1620 aa23.88■■□□□ 1.41
RTN3-214ENST00000545432 POLR1AO95602 1720 aaPredicted RBP23.87■■□□□ 1.41
RTN3-214ENST00000545432 WASHC2CQ9Y4E1 1318 aa23.87■■□□□ 1.41
RTN3-214ENST00000545432 EHBP1L1Q8N3D4 1523 aa23.86■■□□□ 1.41
RTN3-214ENST00000545432 CCDC141Q6ZP82 1450 aa23.85■■□□□ 1.41
RTN3-214ENST00000545432 NPHP4O75161 1426 aaPredicted RBP23.84■■□□□ 1.41
RTN3-214ENST00000545432 DEPDC5O75140 1603 aa23.84■■□□□ 1.41
RTN3-214ENST00000545432 SCAF1Q9H7N4 1312 aaKnown RBP23.83■■□□□ 1.4
RTN3-214ENST00000545432 UGGT1Q9NYU2 1555 aa23.82■■□□□ 1.4
RTN3-214ENST00000545432 CAMSAP2Q08AD1 1489 aa23.77■■□□□ 1.4
RTN3-214ENST00000545432 NCOA2Q15596 1464 aa23.76■■□□□ 1.39
RTN3-214ENST00000545432 LRRC7Q96NW7 1537 aa23.76■■□□□ 1.39
RTN3-214ENST00000545432 ARHGEF5Q12774 1597 aa23.75■■□□□ 1.39
RTN3-214ENST00000545432 TSPY4P0CV99 314 aa23.74■■□□□ 1.39
RTN3-214ENST00000545432 TSPY10P0CW01 314 aa23.74■■□□□ 1.39
RTN3-214ENST00000545432 IQGAP1P46940 1657 aa23.7■■□□□ 1.39
RTN3-214ENST00000545432 ABCC3O15438 1527 aa23.69■■□□□ 1.38
RTN3-214ENST00000545432 PHF23Q9BUL5 403 aaPredicted RBP23.69■■□□□ 1.38
RTN3-214ENST00000545432 STRCP1A6NGW2 1772 aa23.69■■□□□ 1.38
RTN3-214ENST00000545432 RNF17Q9BXT8 1623 aaKnown RBP23.69■■□□□ 1.38
RTN3-214ENST00000545432 ERVK-7P63135 1459 aa23.68■■□□□ 1.38
RTN3-214ENST00000545432 RGS17Q9UGC6 210 aaPredicted RBP23.65■■□□□ 1.38
RTN3-214ENST00000545432 SYNMO15061 1565 aa23.65■■□□□ 1.38
RTN3-214ENST00000545432 MAST1Q9Y2H9 1570 aa23.65■■□□□ 1.38
RTN3-214ENST00000545432 ARHGAP23Q9P227 1491 aa23.64■■□□□ 1.38
RTN3-214ENST00000545432 ZC3H13Q5T200 1668 aaKnown RBP23.63■■□□□ 1.37
RTN3-214ENST00000545432 LTKP29376 864 aa23.62■■□□□ 1.37
RTN3-214ENST00000545432 MROH1Q8NDA8 1641 aa23.61■■□□□ 1.37
RTN3-214ENST00000545432 ARHGAP31Q2M1Z3 1444 aa23.6■■□□□ 1.37
RTN3-214ENST00000545432 SLIT1O75093 1534 aa23.6■■□□□ 1.37
RTN3-214ENST00000545432 SCAF11Q99590 1463 aaKnown RBP23.6■■□□□ 1.37
RTN3-214ENST00000545432 EIF2AK4Q9P2K8 1649 aaKnown RBP23.59■■□□□ 1.37
RTN3-214ENST00000545432 FAM135BQ49AJ0 1406 aa23.58■■□□□ 1.36
RTN3-214ENST00000545432 UBR1Q8IWV7 1749 aa23.57■■□□□ 1.36
RTN3-214ENST00000545432 TXNDC2Q86VQ3 553 aa23.56■■□□□ 1.36
RTN3-214ENST00000545432 LRRC9Q6ZRR7 1453 aa23.55■■□□□ 1.36
RTN3-214ENST00000545432 DUOX2Q9NRD8 1548 aa23.51■■□□□ 1.35
RTN3-214ENST00000545432 EID1Q9Y6B2 187 aa23.49■■□□□ 1.35
RTN3-214ENST00000545432 XIRP1Q702N8 1843 aaKnown RBP23.49■■□□□ 1.35
RTN3-214ENST00000545432 TMEM2Q9UHN6 1383 aa23.49■■□□□ 1.35
RTN3-214ENST00000545432 MYOM3Q5VTT5 1437 aa23.49■■□□□ 1.35
RTN3-214ENST00000545432 SENP3Q9H4L4 574 aaPredicted RBP23.47■■□□□ 1.35
RTN3-214ENST00000545432 PRDM15P57071 1507 aaPredicted RBP23.47■■□□□ 1.35
RTN3-214ENST00000545432 MAP3K1Q13233 1512 aa23.47■■□□□ 1.35
RTN3-214ENST00000545432 KCNA6P17658 529 aa23.46■■□□□ 1.35
RTN3-214ENST00000545432 KANK4Q5T7N3 995 aaPredicted RBP23.45■■□□□ 1.34
RTN3-214ENST00000545432 CEP152O94986 1710 aa23.45■■□□□ 1.34
RTN3-214ENST00000545432 VPS8Q8N3P4 1428 aa23.44■■□□□ 1.34
RTN3-214ENST00000545432 ERBINQ96RT1 1412 aa23.44■■□□□ 1.34
RTN3-214ENST00000545432 POTEAQ6S8J7 498 aa23.44■■□□□ 1.34
RTN3-214ENST00000545432 TMEM94Q12767 1356 aa23.43■■□□□ 1.34
RTN3-214ENST00000545432 CFAP65Q6ZU64 1925 aaKnown RBP23.43■■□□□ 1.34
RTN3-214ENST00000545432 KIF15Q9NS87 1388 aa23.42■■□□□ 1.34
RTN3-214ENST00000545432 TET3O43151 1660 aa23.41■■□□□ 1.34
RTN3-214ENST00000545432 IDI1Q13907 227 aa23.41■■□□□ 1.34
RTN3-214ENST00000545432 ABCC5O15440 1437 aa23.4■■□□□ 1.34
RTN3-214ENST00000545432 KDM5AP29375 1690 aaKnown RBP23.39■■□□□ 1.34
RTN3-214ENST00000545432 LMTK2Q8IWU2 1503 aa23.38■■□□□ 1.33
RTN3-214ENST00000545432 PIK3C2BO00750 1634 aa23.37■■□□□ 1.33
RTN3-214ENST00000545432 RRP7BPQ9NSQ0 103 aa23.36■■□□□ 1.33
RTN3-214ENST00000545432 EFCAB6Q5THR3 1501 aa23.35■■□□□ 1.33
RTN3-214ENST00000545432 NOS1P29475 1434 aa23.34■■□□□ 1.33
RTN3-214ENST00000545432 PROSER2Q86WR7 435 aaPredicted RBP23.34■■□□□ 1.33
RTN3-214ENST00000545432 KANK1Q14678 1352 aa23.32■■□□□ 1.32
RTN3-214ENST00000545432 SLC26A8Q96RN1 970 aa23.32■■□□□ 1.32
RTN3-214ENST00000545432 STAG3Q9UJ98 1225 aa23.32■■□□□ 1.32
RTN3-214ENST00000545432 NKTRP30414 1462 aaKnown RBP23.31■■□□□ 1.32
RTN3-214ENST00000545432 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.31■■□□□ 1.32
RTN3-214ENST00000545432 SLC52A1Q9NWF4 448 aa23.3■■□□□ 1.32
RTN3-214ENST00000545432 NWD1Q149M9 1564 aa23.3■■□□□ 1.32
RTN3-214ENST00000545432 ROBO1Q9Y6N7 1651 aa23.29■■□□□ 1.32
RTN3-214ENST00000545432 DAPK1P53355 1430 aa23.28■■□□□ 1.32
RTN3-214ENST00000545432 SLAIN2Q9P270 581 aa23.28■■□□□ 1.32
RTN3-214ENST00000545432 RBM33Q96EV2 1170 aaKnown RBP23.26■■□□□ 1.31
RTN3-214ENST00000545432 CROCC2H7BZ55 1655 aa23.25■■□□□ 1.31
RTN3-214ENST00000545432 MSH6P52701 1360 aa23.25■■□□□ 1.31
RTN3-214ENST00000545432 JCADQ9P266 1359 aa23.25■■□□□ 1.31
RTN3-214ENST00000545432 ANKRD30AQ9BXX3 1397 aa23.24■■□□□ 1.31
RTN3-214ENST00000545432 NCOA3Q9Y6Q9 1424 aa23.24■■□□□ 1.31
RTN3-214ENST00000545432 ADGRB3O60242 1522 aa23.23■■□□□ 1.31
RTN3-214ENST00000545432 ZFYVE9O95405 1425 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms