RNA–Protein interactions for RNA: ENST00000544738.5

DDX55-212, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 956 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-212ENST00000544738 CCNB3Q8WWL7 1395 aa25.89■■□□□ 1.74
DDX55-212ENST00000544738 TNRQ92752 1358 aa25.89■■□□□ 1.74
DDX55-212ENST00000544738 PLEKHH2Q8IVE3 1493 aa25.89■■□□□ 1.73
DDX55-212ENST00000544738 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.86■■□□□ 1.73
DDX55-212ENST00000544738 THEMISQ8N1K5 641 aaPredicted RBP25.86■■□□□ 1.73
DDX55-212ENST00000544738 INO80Q9ULG1 1556 aaPredicted RBP25.86■■□□□ 1.73
DDX55-212ENST00000544738 ZNF644Q9H582 1327 aaPredicted RBP25.86■■□□□ 1.73
DDX55-212ENST00000544738 KIF3BO15066 747 aa25.84■■□□□ 1.73
DDX55-212ENST00000544738 NEURL4Q96JN8 1562 aa25.82■■□□□ 1.72
DDX55-212ENST00000544738 WASHC2CQ9Y4E1 1318 aa25.81■■□□□ 1.72
DDX55-212ENST00000544738 DHX29Q7Z478 1369 aaKnown RBP25.8■■□□□ 1.72
DDX55-212ENST00000544738 LOC105371045A0A1W2PR82 267 aa25.79■■□□□ 1.72
DDX55-212ENST00000544738 NPHP4O75161 1426 aaPredicted RBP25.78■■□□□ 1.72
DDX55-212ENST00000544738 EHBP1L1Q8N3D4 1523 aa25.78■■□□□ 1.72
DDX55-212ENST00000544738 POLR1AO95602 1720 aaPredicted RBP25.77■■□□□ 1.72
DDX55-212ENST00000544738 VWDEQ8N2E2 1590 aa25.77■■□□□ 1.72
DDX55-212ENST00000544738 ADGBQ8N7X0 1667 aa25.76■■□□□ 1.71
DDX55-212ENST00000544738 ALKQ9UM73 1620 aa25.74■■□□□ 1.71
DDX55-212ENST00000544738 MIA2Q96PC5 1412 aa25.74■■□□□ 1.71
DDX55-212ENST00000544738 RGS17Q9UGC6 210 aaPredicted RBP25.74■■□□□ 1.71
DDX55-212ENST00000544738 PZPP20742 1482 aa25.72■■□□□ 1.71
DDX55-212ENST00000544738 RTEL1-TNFRSF6BF6WH68 1400 aa25.71■■□□□ 1.71
DDX55-212ENST00000544738 FAM135AQ9P2D6 1515 aa25.71■■□□□ 1.71
DDX55-212ENST00000544738 MBD5Q9P267 1494 aa25.7■■□□□ 1.7
DDX55-212ENST00000544738 MED14O60244 1454 aa25.69■■□□□ 1.7
DDX55-212ENST00000544738 VPS8Q8N3P4 1428 aa25.69■■□□□ 1.7
DDX55-212ENST00000544738 TIAM1Q13009 1591 aa25.69■■□□□ 1.7
DDX55-212ENST00000544738 UGGT1Q9NYU2 1555 aa25.69■■□□□ 1.7
DDX55-212ENST00000544738 NLRP1Q9C000 1473 aa25.67■■□□□ 1.7
DDX55-212ENST00000544738 LRRC7Q96NW7 1537 aa25.67■■□□□ 1.7
DDX55-212ENST00000544738 KDM5DQ9BY66 1539 aa25.66■■□□□ 1.7
DDX55-212ENST00000544738 NCOA2Q15596 1464 aa25.62■■□□□ 1.69
DDX55-212ENST00000544738 DEPDC5O75140 1603 aa25.62■■□□□ 1.69
DDX55-212ENST00000544738 IQGAP1P46940 1657 aa25.59■■□□□ 1.69
DDX55-212ENST00000544738 POTEAQ6S8J7 498 aa25.59■■□□□ 1.69
DDX55-212ENST00000544738 RSPH4AQ5TD94 716 aa25.58■■□□□ 1.69
DDX55-212ENST00000544738 STRCP1A6NGW2 1772 aa25.57■■□□□ 1.68
DDX55-212ENST00000544738 LRRC9Q6ZRR7 1453 aa25.55■■□□□ 1.68
DDX55-212ENST00000544738 MAP3K1Q13233 1512 aa25.55■■□□□ 1.68
DDX55-212ENST00000544738 TSPY4P0CV99 314 aa25.55■■□□□ 1.68
DDX55-212ENST00000544738 TSPY10P0CW01 314 aa25.55■■□□□ 1.68
DDX55-212ENST00000544738 RNF17Q9BXT8 1623 aaKnown RBP25.55■■□□□ 1.68
DDX55-212ENST00000544738 CCDC141Q6ZP82 1450 aa25.54■■□□□ 1.68
DDX55-212ENST00000544738 TXNDC2Q86VQ3 553 aa25.52■■□□□ 1.68
DDX55-212ENST00000544738 CAMSAP2Q08AD1 1489 aa25.51■■□□□ 1.67
DDX55-212ENST00000544738 LTKP29376 864 aa25.5■■□□□ 1.67
DDX55-212ENST00000544738 SYNMO15061 1565 aa25.48■■□□□ 1.67
DDX55-212ENST00000544738 KANK4Q5T7N3 995 aaPredicted RBP25.46■■□□□ 1.67
DDX55-212ENST00000544738 APLP2Q06481 763 aa25.45■■□□□ 1.66
DDX55-212ENST00000544738 EID1Q9Y6B2 187 aa25.45■■□□□ 1.66
DDX55-212ENST00000544738 FAM135BQ49AJ0 1406 aa25.45■■□□□ 1.66
DDX55-212ENST00000544738 SCAF11Q99590 1463 aaKnown RBP25.44■■□□□ 1.66
DDX55-212ENST00000544738 ERVK-7P63135 1459 aa25.43■■□□□ 1.66
DDX55-212ENST00000544738 ARHGEF5Q12774 1597 aa25.42■■□□□ 1.66
DDX55-212ENST00000544738 ABCC3O15438 1527 aa25.42■■□□□ 1.66
DDX55-212ENST00000544738 ZC3H13Q5T200 1668 aaKnown RBP25.39■■□□□ 1.66
DDX55-212ENST00000544738 RBM33Q96EV2 1170 aaKnown RBP25.39■■□□□ 1.66
DDX55-212ENST00000544738 CFAP65Q6ZU64 1925 aaKnown RBP25.39■■□□□ 1.65
DDX55-212ENST00000544738 MYOM3Q5VTT5 1437 aa25.38■■□□□ 1.65
DDX55-212ENST00000544738 TMEM94Q12767 1356 aa25.37■■□□□ 1.65
DDX55-212ENST00000544738 PROSER2Q86WR7 435 aaPredicted RBP25.36■■□□□ 1.65
DDX55-212ENST00000544738 STAG3Q9UJ98 1225 aa25.36■■□□□ 1.65
DDX55-212ENST00000544738 UBR1Q8IWV7 1749 aa25.34■■□□□ 1.65
DDX55-212ENST00000544738 ARHGAP23Q9P227 1491 aa25.33■■□□□ 1.65
DDX55-212ENST00000544738 XIRP1Q702N8 1843 aaKnown RBP25.33■■□□□ 1.64
DDX55-212ENST00000544738 KCNA6P17658 529 aa25.32■■□□□ 1.64
DDX55-212ENST00000544738 SLC26A8Q96RN1 970 aa25.31■■□□□ 1.64
DDX55-212ENST00000544738 SLIT1O75093 1534 aa25.3■■□□□ 1.64
DDX55-212ENST00000544738 MAST1Q9Y2H9 1570 aa25.29■■□□□ 1.64
DDX55-212ENST00000544738 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.28■■□□□ 1.647e-10■■■■□ 26.7
DDX55-212ENST00000544738 TMEM2Q9UHN6 1383 aa25.28■■□□□ 1.64
DDX55-212ENST00000544738 BCANQ96GW7 911 aa25.25■■□□□ 1.63
DDX55-212ENST00000544738 SLAIN2Q9P270 581 aa25.25■■□□□ 1.63
DDX55-212ENST00000544738 ROBO1Q9Y6N7 1651 aa25.25■■□□□ 1.63
DDX55-212ENST00000544738 SETD1AO15047 1707 aaKnown RBP25.23■■□□□ 1.63
DDX55-212ENST00000544738 CEP152O94986 1710 aa25.23■■□□□ 1.63
DDX55-212ENST00000544738 UPF1Q92900 1129 aaKnown RBP eCLIP25.23■■□□□ 1.63
DDX55-212ENST00000544738 MROH1Q8NDA8 1641 aa25.22■■□□□ 1.63
DDX55-212ENST00000544738 JCADQ9P266 1359 aa25.21■■□□□ 1.63
DDX55-212ENST00000544738 IDI1Q13907 227 aa25.21■■□□□ 1.63
DDX55-212ENST00000544738 TRIM52Q96A61 297 aa25.21■■□□□ 1.63
DDX55-212ENST00000544738 MEX3CQ5U5Q3 659 aaKnown RBP25.2■■□□□ 1.62
DDX55-212ENST00000544738 ARHGAP31Q2M1Z3 1444 aa25.2■■□□□ 1.62
DDX55-212ENST00000544738 MSH6P52701 1360 aa25.19■■□□□ 1.62
DDX55-212ENST00000544738 EIF2AK4Q9P2K8 1649 aaKnown RBP25.19■■□□□ 1.62
DDX55-212ENST00000544738 PTPN23Q9H3S7 1636 aa25.19■■□□□ 1.62
DDX55-212ENST00000544738 RRP7BPQ9NSQ0 103 aa25.18■■□□□ 1.62
DDX55-212ENST00000544738 FGD6Q6ZV73 1430 aa25.17■■□□□ 1.62
DDX55-212ENST00000544738 PIK3C2BO00750 1634 aa25.15■■□□□ 1.62
DDX55-212ENST00000544738 ZNF772Q68DY9 489 aaPredicted RBP25.15■■□□□ 1.62
DDX55-212ENST00000544738 DUOX2Q9NRD8 1548 aa25.15■■□□□ 1.62
DDX55-212ENST00000544738 ABCC5O15440 1437 aa25.14■■□□□ 1.62
DDX55-212ENST00000544738 PRDM15P57071 1507 aaPredicted RBP25.13■■□□□ 1.61
DDX55-212ENST00000544738 KIF15Q9NS87 1388 aa25.12■■□□□ 1.61
DDX55-212ENST00000544738 PHLPP1O60346 1717 aa25.12■■□□□ 1.61
DDX55-212ENST00000544738 EFCAB6Q5THR3 1501 aa25.12■■□□□ 1.61
DDX55-212ENST00000544738 DAPK1P53355 1430 aa25.12■■□□□ 1.61
DDX55-212ENST00000544738 KANK1Q14678 1352 aa25.11■■□□□ 1.61
DDX55-212ENST00000544738 CROCC2H7BZ55 1655 aa25.1■■□□□ 1.61
DDX55-212ENST00000544738 TET3O43151 1660 aa25.1■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms