RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 SENP3Q9H4L4 574 aaPredicted RBP13.87□□□□□ -0.19
CLSTN3-212ENST00000541770 TIAM1Q13009 1591 aa13.87□□□□□ -0.19
CLSTN3-212ENST00000541770 CPS1P31327 1500 aa13.86□□□□□ -0.19
CLSTN3-212ENST00000541770 FBXO31Q5XUX0 539 aaPredicted RBP13.86□□□□□ -0.19
CLSTN3-212ENST00000541770 PHF23Q9BUL5 403 aaPredicted RBP13.86□□□□□ -0.19
CLSTN3-212ENST00000541770 CEP162Q5TB80 1403 aa13.86□□□□□ -0.19
CLSTN3-212ENST00000541770 NEURL4Q96JN8 1562 aa13.86□□□□□ -0.19
CLSTN3-212ENST00000541770 TNRQ92752 1358 aa13.85□□□□□ -0.19
CLSTN3-212ENST00000541770 KIF3BO15066 747 aa13.85□□□□□ -0.19
CLSTN3-212ENST00000541770 SHANK2Q9UPX8 1470 aa13.85□□□□□ -0.19
CLSTN3-212ENST00000541770 ANKLE2Q86XL3 938 aa13.83□□□□□ -0.2
CLSTN3-212ENST00000541770 KDM5DQ9BY66 1539 aa13.83□□□□□ -0.2
CLSTN3-212ENST00000541770 DHX29Q7Z478 1369 aaKnown RBP13.83□□□□□ -0.2
CLSTN3-212ENST00000541770 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.83□□□□□ -0.2
CLSTN3-212ENST00000541770 EHBP1L1Q8N3D4 1523 aa13.82□□□□□ -0.2
CLSTN3-212ENST00000541770 WASHC2CQ9Y4E1 1318 aa13.82□□□□□ -0.2
CLSTN3-212ENST00000541770 RTEL1-TNFRSF6BF6WH68 1400 aa13.81□□□□□ -0.2
CLSTN3-212ENST00000541770 MBD5Q9P267 1494 aa13.81□□□□□ -0.2
CLSTN3-212ENST00000541770 PZPP20742 1482 aa13.8□□□□□ -0.2
CLSTN3-212ENST00000541770 UGGT1Q9NYU2 1555 aa13.8□□□□□ -0.2
CLSTN3-212ENST00000541770 THEMISQ8N1K5 641 aaPredicted RBP13.8□□□□□ -0.2
CLSTN3-212ENST00000541770 VWDEQ8N2E2 1590 aa13.79□□□□□ -0.2
CLSTN3-212ENST00000541770 IQGAP1P46940 1657 aa13.79□□□□□ -0.2
CLSTN3-212ENST00000541770 NPHP4O75161 1426 aaPredicted RBP13.79□□□□□ -0.2
CLSTN3-212ENST00000541770 CCDC141Q6ZP82 1450 aa13.79□□□□□ -0.2
CLSTN3-212ENST00000541770 FAM135AQ9P2D6 1515 aa13.79□□□□□ -0.2
CLSTN3-212ENST00000541770 CFAP65Q6ZU64 1925 aaKnown RBP13.78□□□□□ -0.2
CLSTN3-212ENST00000541770 STRCP1A6NGW2 1772 aa13.77□□□□□ -0.21
CLSTN3-212ENST00000541770 DEPDC5O75140 1603 aa13.77□□□□□ -0.21
CLSTN3-212ENST00000541770 CAMSAP2Q08AD1 1489 aa13.76□□□□□ -0.21
CLSTN3-212ENST00000541770 NLRP1Q9C000 1473 aa13.76□□□□□ -0.21
CLSTN3-212ENST00000541770 MIA2Q96PC5 1412 aa13.76□□□□□ -0.21
CLSTN3-212ENST00000541770 ALKQ9UM73 1620 aa13.75□□□□□ -0.21
CLSTN3-212ENST00000541770 MED14O60244 1454 aa13.74□□□□□ -0.21
CLSTN3-212ENST00000541770 RNF17Q9BXT8 1623 aaKnown RBP13.73□□□□□ -0.21
CLSTN3-212ENST00000541770 TSPY4P0CV99 314 aa13.73□□□□□ -0.21
CLSTN3-212ENST00000541770 TSPY10P0CW01 314 aa13.73□□□□□ -0.21
CLSTN3-212ENST00000541770 NCOA2Q15596 1464 aa13.73□□□□□ -0.21
CLSTN3-212ENST00000541770 SYNMO15061 1565 aa13.72□□□□□ -0.21
CLSTN3-212ENST00000541770 RSPH4AQ5TD94 716 aa13.72□□□□□ -0.21
CLSTN3-212ENST00000541770 CEP152O94986 1710 aa13.72□□□□□ -0.21
CLSTN3-212ENST00000541770 ZC3H13Q5T200 1668 aaKnown RBP13.72□□□□□ -0.21
CLSTN3-212ENST00000541770 LRRC7Q96NW7 1537 aa13.71□□□□□ -0.21
CLSTN3-212ENST00000541770 ARHGEF5Q12774 1597 aa13.7□□□□□ -0.22
CLSTN3-212ENST00000541770 VPS8Q8N3P4 1428 aa13.69□□□□□ -0.22
CLSTN3-212ENST00000541770 UBR1Q8IWV7 1749 aa13.69□□□□□ -0.22
CLSTN3-212ENST00000541770 ABCC3O15438 1527 aa13.69□□□□□ -0.22
CLSTN3-212ENST00000541770 ERVK-7P63135 1459 aa13.67□□□□□ -0.22
CLSTN3-212ENST00000541770 EIF2AK4Q9P2K8 1649 aaKnown RBP13.66□□□□□ -0.22
CLSTN3-212ENST00000541770 XIRP1Q702N8 1843 aaKnown RBP13.66□□□□□ -0.22
CLSTN3-212ENST00000541770 MAST1Q9Y2H9 1570 aa13.64□□□□□ -0.23
CLSTN3-212ENST00000541770 SCAF11Q99590 1463 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-212ENST00000541770 TXNDC2Q86VQ3 553 aa13.64□□□□□ -0.23
CLSTN3-212ENST00000541770 MROH1Q8NDA8 1641 aa13.63□□□□□ -0.23
CLSTN3-212ENST00000541770 LTKP29376 864 aa13.61□□□□□ -0.23
CLSTN3-212ENST00000541770 RGS17Q9UGC6 210 aaPredicted RBP13.61□□□□□ -0.23
CLSTN3-212ENST00000541770 STAG3Q9UJ98 1225 aa13.61□□□□□ -0.23
CLSTN3-212ENST00000541770 EID1Q9Y6B2 187 aa13.61□□□□□ -0.23
CLSTN3-212ENST00000541770 PIK3C2BO00750 1634 aa13.6□□□□□ -0.23
CLSTN3-212ENST00000541770 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.59□□□□□ -0.23
CLSTN3-212ENST00000541770 DUOX2Q9NRD8 1548 aa13.59□□□□□ -0.23
CLSTN3-212ENST00000541770 LRRC9Q6ZRR7 1453 aa13.58□□□□□ -0.24
CLSTN3-212ENST00000541770 SLIT1O75093 1534 aa13.58□□□□□ -0.24
CLSTN3-212ENST00000541770 MAP3K1Q13233 1512 aa13.58□□□□□ -0.24
CLSTN3-212ENST00000541770 ROBO1Q9Y6N7 1651 aa13.57□□□□□ -0.24
CLSTN3-212ENST00000541770 ARHGAP23Q9P227 1491 aa13.57□□□□□ -0.24
CLSTN3-212ENST00000541770 RBM33Q96EV2 1170 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-212ENST00000541770 POTEAQ6S8J7 498 aa13.55□□□□□ -0.24
CLSTN3-212ENST00000541770 CROCC2H7BZ55 1655 aa13.55□□□□□ -0.24
CLSTN3-212ENST00000541770 SETD1AO15047 1707 aaKnown RBP13.55□□□□□ -0.24
CLSTN3-212ENST00000541770 PRDM15P57071 1507 aaPredicted RBP13.54□□□□□ -0.24
CLSTN3-212ENST00000541770 PROSER2Q86WR7 435 aaPredicted RBP13.54□□□□□ -0.24
CLSTN3-212ENST00000541770 BCANQ96GW7 911 aa13.54□□□□□ -0.24
CLSTN3-212ENST00000541770 RRP7BPQ9NSQ0 103 aa13.54□□□□□ -0.24
CLSTN3-212ENST00000541770 TMEM94Q12767 1356 aa13.54□□□□□ -0.24
CLSTN3-212ENST00000541770 FAM135BQ49AJ0 1406 aa13.54□□□□□ -0.24
CLSTN3-212ENST00000541770 MYOM3Q5VTT5 1437 aa13.54□□□□□ -0.24
CLSTN3-212ENST00000541770 KANK4Q5T7N3 995 aaPredicted RBP13.53□□□□□ -0.24
CLSTN3-212ENST00000541770 SLC26A8Q96RN1 970 aa13.53□□□□□ -0.24
CLSTN3-212ENST00000541770 KIF15Q9NS87 1388 aa13.53□□□□□ -0.24
CLSTN3-212ENST00000541770 TMEM2Q9UHN6 1383 aa13.53□□□□□ -0.24
CLSTN3-212ENST00000541770 APLP2Q06481 763 aa13.52□□□□□ -0.25
CLSTN3-212ENST00000541770 KANK1Q14678 1352 aa13.52□□□□□ -0.25
CLSTN3-212ENST00000541770 ARHGAP31Q2M1Z3 1444 aa13.52□□□□□ -0.25
CLSTN3-212ENST00000541770 EFCAB6Q5THR3 1501 aa13.52□□□□□ -0.25
CLSTN3-212ENST00000541770 PHLPP1O60346 1717 aa13.52□□□□□ -0.25
CLSTN3-212ENST00000541770 ERBINQ96RT1 1412 aa13.5□□□□□ -0.25
CLSTN3-212ENST00000541770 KCNA6P17658 529 aa13.5□□□□□ -0.25
CLSTN3-212ENST00000541770 KDM5AP29375 1690 aaKnown RBP13.5□□□□□ -0.25
CLSTN3-212ENST00000541770 PTPN23Q9H3S7 1636 aa13.5□□□□□ -0.25
CLSTN3-212ENST00000541770 IDI1Q13907 227 aa13.49□□□□□ -0.25
CLSTN3-212ENST00000541770 ABCC5O15440 1437 aa13.47□□□□□ -0.25
CLSTN3-212ENST00000541770 MSH6P52701 1360 aa13.47□□□□□ -0.25
CLSTN3-212ENST00000541770 CHIC2Q9UKJ5 165 aa13.47□□□□□ -0.25
CLSTN3-212ENST00000541770 MYO5BQ9ULV0 1848 aa13.47□□□□□ -0.25
CLSTN3-212ENST00000541770 TET3O43151 1660 aa13.47□□□□□ -0.25
CLSTN3-212ENST00000541770 NWD1Q149M9 1564 aa13.45□□□□□ -0.26
CLSTN3-212ENST00000541770 ADGRB3O60242 1522 aa13.45□□□□□ -0.26
CLSTN3-212ENST00000541770 NKTRP30414 1462 aaKnown RBP13.45□□□□□ -0.26
CLSTN3-212ENST00000541770 DAPK1P53355 1430 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms