RNA–Protein interactions for RNA: ENST00000539952.5

CPSF7-219, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 953 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-219ENST00000539952 A2ML1A8K2U0 1454 aa9.6□□□□□ -0.87
CPSF7-219ENST00000539952 KIF3BO15066 747 aa9.6□□□□□ -0.87
CPSF7-219ENST00000539952 DHX29Q7Z478 1369 aaKnown RBP9.6□□□□□ -0.87
CPSF7-219ENST00000539952 CCNB3Q8WWL7 1395 aa9.6□□□□□ -0.87
CPSF7-219ENST00000539952 SHANK2Q9UPX8 1470 aa9.59□□□□□ -0.87
CPSF7-219ENST00000539952 WASHC2CQ9Y4E1 1318 aa9.59□□□□□ -0.87
CPSF7-219ENST00000539952 CPS1P31327 1500 aa9.59□□□□□ -0.87
CPSF7-219ENST00000539952 PREX2Q70Z35 1606 aa9.59□□□□□ -0.87
CPSF7-219ENST00000539952 CEP170BQ9Y4F5 1589 aaPredicted RBP9.58□□□□□ -0.88
CPSF7-219ENST00000539952 ITSN2Q9NZM3 1697 aa9.58□□□□□ -0.88
CPSF7-219ENST00000539952 TNRQ92752 1358 aa9.58□□□□□ -0.88
CPSF7-219ENST00000539952 RTEL1-TNFRSF6BF6WH68 1400 aa9.57□□□□□ -0.88
CPSF7-219ENST00000539952 MIA2Q96PC5 1412 aa9.56□□□□□ -0.88
CPSF7-219ENST00000539952 SUPT6HQ7KZ85 1726 aaKnown RBP9.56□□□□□ -0.88
CPSF7-219ENST00000539952 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.56□□□□□ -0.881e-11■■□□□ 12.1
CPSF7-219ENST00000539952 TSPY4P0CV99 314 aa9.56□□□□□ -0.88
CPSF7-219ENST00000539952 TSPY10P0CW01 314 aa9.56□□□□□ -0.88
CPSF7-219ENST00000539952 ATP7AQ04656 1500 aa9.56□□□□□ -0.88
CPSF7-219ENST00000539952 ZNF644Q9H582 1327 aaPredicted RBP9.56□□□□□ -0.88
CPSF7-219ENST00000539952 SYCP2Q9BX26 1530 aa9.55□□□□□ -0.88
CPSF7-219ENST00000539952 ZNF142P52746 1687 aaPredicted RBP9.55□□□□□ -0.88
CPSF7-219ENST00000539952 CLTCQ00610 1675 aaKnown RBP9.55□□□□□ -0.88
CPSF7-219ENST00000539952 MED1Q15648 1581 aaPredicted RBP9.54□□□□□ -0.88
CPSF7-219ENST00000539952 MTUS2Q5JR59 1369 aa9.54□□□□□ -0.88
CPSF7-219ENST00000539952 DNMT1P26358 1616 aaKnown RBP9.54□□□□□ -0.88
CPSF7-219ENST00000539952 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.54□□□□□ -0.882e-8■■□□□ 11.7
CPSF7-219ENST00000539952 CDC42BPAQ5VT25 1732 aa9.53□□□□□ -0.88
CPSF7-219ENST00000539952 MYO3AQ8NEV4 1616 aa9.53□□□□□ -0.88
CPSF7-219ENST00000539952 POTEDQ86YR6 584 aa9.53□□□□□ -0.88
CPSF7-219ENST00000539952 NPHP4O75161 1426 aaPredicted RBP9.53□□□□□ -0.88
CPSF7-219ENST00000539952 PLXNC1O60486 1568 aa9.53□□□□□ -0.88
CPSF7-219ENST00000539952 MED14O60244 1454 aa9.53□□□□□ -0.88
CPSF7-219ENST00000539952 FYCO1Q9BQS8 1478 aa9.53□□□□□ -0.88
CPSF7-219ENST00000539952 FAM135AQ9P2D6 1515 aa9.52□□□□□ -0.88
CPSF7-219ENST00000539952 RGS17Q9UGC6 210 aaPredicted RBP9.52□□□□□ -0.89
CPSF7-219ENST00000539952 NLRP1Q9C000 1473 aa9.52□□□□□ -0.89
CPSF7-219ENST00000539952 LRRIQ1Q96JM4 1722 aa9.51□□□□□ -0.89
CPSF7-219ENST00000539952 U3KPZ7 1027 aaPredicted RBP9.51□□□□□ -0.89
CPSF7-219ENST00000539952 PZPP20742 1482 aa9.51□□□□□ -0.89
CPSF7-219ENST00000539952 MBD5Q9P267 1494 aa9.51□□□□□ -0.89
CPSF7-219ENST00000539952 INO80Q9ULG1 1556 aaPredicted RBP9.5□□□□□ -0.89
CPSF7-219ENST00000539952 MYCNP04198 464 aaPredicted RBP9.49□□□□□ -0.89
CPSF7-219ENST00000539952 TXNDC2Q86VQ3 553 aa9.49□□□□□ -0.89
CPSF7-219ENST00000539952 EID1Q9Y6B2 187 aa9.49□□□□□ -0.89
CPSF7-219ENST00000539952 UGGT1Q9NYU2 1555 aa9.49□□□□□ -0.89
CPSF7-219ENST00000539952 ADGBQ8N7X0 1667 aa9.48□□□□□ -0.89
CPSF7-219ENST00000539952 ATF5Q9Y2D1 282 aaPredicted RBP9.48□□□□□ -0.89
CPSF7-219ENST00000539952 LRRC7Q96NW7 1537 aa9.47□□□□□ -0.89
CPSF7-219ENST00000539952 VWDEQ8N2E2 1590 aa9.47□□□□□ -0.89
CPSF7-219ENST00000539952 NEURL4Q96JN8 1562 aa9.47□□□□□ -0.89
CPSF7-219ENST00000539952 FAM135BQ49AJ0 1406 aa9.47□□□□□ -0.89
CPSF7-219ENST00000539952 LTKP29376 864 aa9.46□□□□□ -0.9
CPSF7-219ENST00000539952 POTEAQ6S8J7 498 aa9.46□□□□□ -0.9
CPSF7-219ENST00000539952 KDM5DQ9BY66 1539 aa9.46□□□□□ -0.9
CPSF7-219ENST00000539952 DEPDC5O75140 1603 aa9.45□□□□□ -0.9
CPSF7-219ENST00000539952 CEP162Q5TB80 1403 aa9.45□□□□□ -0.9
CPSF7-219ENST00000539952 KCNA6P17658 529 aa9.44□□□□□ -0.9
CPSF7-219ENST00000539952 STAG3Q9UJ98 1225 aa9.44□□□□□ -0.9
CPSF7-219ENST00000539952 CCDC141Q6ZP82 1450 aa9.44□□□□□ -0.9
CPSF7-219ENST00000539952 POLR1AO95602 1720 aaPredicted RBP9.44□□□□□ -0.9
CPSF7-219ENST00000539952 ALKQ9UM73 1620 aa9.43□□□□□ -0.9
CPSF7-219ENST00000539952 PROSER2Q86WR7 435 aaPredicted RBP9.43□□□□□ -0.9
CPSF7-219ENST00000539952 HDGFP51858 240 aaKnown RBP9.4□□□□□ -0.9
CPSF7-219ENST00000539952 SCAF11Q99590 1463 aaKnown RBP9.4□□□□□ -0.91
CPSF7-219ENST00000539952 IQGAP1P46940 1657 aa9.39□□□□□ -0.91
CPSF7-219ENST00000539952 TIAM1Q13009 1591 aa9.39□□□□□ -0.91
CPSF7-219ENST00000539952 SLAIN2Q9P270 581 aa9.39□□□□□ -0.91
CPSF7-219ENST00000539952 EHBP1L1Q8N3D4 1523 aa9.39□□□□□ -0.91
CPSF7-219ENST00000539952 TMEM94Q12767 1356 aa9.38□□□□□ -0.91
CPSF7-219ENST00000539952 ZNF772Q68DY9 489 aaPredicted RBP9.38□□□□□ -0.91
CPSF7-219ENST00000539952 ERVK-7P63135 1459 aa9.38□□□□□ -0.91
CPSF7-219ENST00000539952 NCOA2Q15596 1464 aa9.38□□□□□ -0.91
CPSF7-219ENST00000539952 RNF17Q9BXT8 1623 aaKnown RBP9.38□□□□□ -0.91
CPSF7-219ENST00000539952 TMEM2Q9UHN6 1383 aa9.37□□□□□ -0.91
CPSF7-219ENST00000539952 CAMSAP2Q08AD1 1489 aa9.37□□□□□ -0.91
CPSF7-219ENST00000539952 ARHGAP23Q9P227 1491 aa9.37□□□□□ -0.91
CPSF7-219ENST00000539952 IDI1Q13907 227 aa9.37□□□□□ -0.91
CPSF7-219ENST00000539952 BCANQ96GW7 911 aa9.37□□□□□ -0.91
CPSF7-219ENST00000539952 SLC26A8Q96RN1 970 aa9.37□□□□□ -0.91
CPSF7-219ENST00000539952 ARHGAP31Q2M1Z3 1444 aa9.37□□□□□ -0.91
CPSF7-219ENST00000539952 SYNMO15061 1565 aa9.37□□□□□ -0.91
CPSF7-219ENST00000539952 SLIT1O75093 1534 aa9.36□□□□□ -0.91
CPSF7-219ENST00000539952 UPF1Q92900 1129 aaKnown RBP eCLIP9.36□□□□□ -0.91
CPSF7-219ENST00000539952 SLC52A1Q9NWF4 448 aa9.36□□□□□ -0.91
CPSF7-219ENST00000539952 JCADQ9P266 1359 aa9.36□□□□□ -0.91
CPSF7-219ENST00000539952 ABCC3O15438 1527 aa9.36□□□□□ -0.91
CPSF7-219ENST00000539952 STRCP1A6NGW2 1772 aa9.35□□□□□ -0.91
CPSF7-219ENST00000539952 ARHGEF5Q12774 1597 aa9.35□□□□□ -0.91
CPSF7-219ENST00000539952 MSH6P52701 1360 aa9.35□□□□□ -0.91
CPSF7-219ENST00000539952 KANK1Q14678 1352 aa9.35□□□□□ -0.91
CPSF7-219ENST00000539952 RBM33Q96EV2 1170 aaKnown RBP9.34□□□□□ -0.91
CPSF7-219ENST00000539952 RRP7BPQ9NSQ0 103 aa9.34□□□□□ -0.91
CPSF7-219ENST00000539952 SPATA31A6Q5VVP1 1343 aa9.33□□□□□ -0.92
CPSF7-219ENST00000539952 RXRBP28702 533 aa9.33□□□□□ -0.92
CPSF7-219ENST00000539952 MEX3CQ5U5Q3 659 aaKnown RBP9.33□□□□□ -0.92
CPSF7-219ENST00000539952 CFAP65Q6ZU64 1925 aaKnown RBP9.33□□□□□ -0.92
CPSF7-219ENST00000539952 MYOM3Q5VTT5 1437 aa9.32□□□□□ -0.92
CPSF7-219ENST00000539952 TBX22Q9Y458 520 aa9.32□□□□□ -0.92
CPSF7-219ENST00000539952 ZC3H13Q5T200 1668 aaKnown RBP9.32□□□□□ -0.92
CPSF7-219ENST00000539952 ATXN8OSP0DMR3 200 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms