RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 NOL8Q76FK4 1167 aaKnown RBP12.33□□□□□ -0.44
COL4A6-208ENST00000538570 KIF16BQ96L93 1317 aa12.33□□□□□ -0.44
COL4A6-208ENST00000538570 EIF3AQ14152 1382 aaKnown RBP12.33□□□□□ -0.44
COL4A6-208ENST00000538570 DDX11L8A8MPP1 907 aa12.33□□□□□ -0.44
COL4A6-208ENST00000538570 CEP89Q96ST8 783 aa12.33□□□□□ -0.44
COL4A6-208ENST00000538570 PDS5BQ9NTI5 1447 aa12.32□□□□□ -0.44
COL4A6-208ENST00000538570 KIF3AQ9Y496 699 aa12.32□□□□□ -0.44
COL4A6-208ENST00000538570 FAM13BQ9NYF5 915 aa12.31□□□□□ -0.44
COL4A6-208ENST00000538570 CENPJQ9HC77 1338 aaPredicted RBP12.31□□□□□ -0.44
COL4A6-208ENST00000538570 SF3A1Q15459 793 aaKnown RBP12.3□□□□□ -0.44
COL4A6-208ENST00000538570 GGT6Q6P531 493 aa12.3□□□□□ -0.44
COL4A6-208ENST00000538570 SLC4A10Q6U841 1118 aa12.3□□□□□ -0.44
COL4A6-208ENST00000538570 FOXD1Q16676 465 aa12.3□□□□□ -0.44
COL4A6-208ENST00000538570 PDE3BQ13370 1112 aa12.29□□□□□ -0.44
COL4A6-208ENST00000538570 VPS8Q8N3P4 1428 aa12.29□□□□□ -0.44
COL4A6-208ENST00000538570 LMOD3Q0VAK6 560 aa12.29□□□□□ -0.44
COL4A6-208ENST00000538570 CLUAP1Q96AJ1 413 aa12.28□□□□□ -0.44
COL4A6-208ENST00000538570 FANCIQ9NVI1 1328 aa12.28□□□□□ -0.44
COL4A6-208ENST00000538570 FOXD4L5Q5VV16 416 aaPredicted RBP12.27□□□□□ -0.44
COL4A6-208ENST00000538570 FOXD4L4Q8WXT5 416 aaPredicted RBP12.27□□□□□ -0.44
COL4A6-208ENST00000538570 CCDC146Q8IYE0 955 aa12.27□□□□□ -0.45
COL4A6-208ENST00000538570 MPHOSPH9Q99550 1183 aa12.27□□□□□ -0.45
COL4A6-208ENST00000538570 TPD52L1Q16890 204 aaPredicted RBP12.27□□□□□ -0.45
COL4A6-208ENST00000538570 TERF2IPQ9NYB0 399 aa12.27□□□□□ -0.45
COL4A6-208ENST00000538570 TSR1Q2NL82 804 aaKnown RBP12.27□□□□□ -0.45
COL4A6-208ENST00000538570 TOMM22Q9NS69 142 aa12.27□□□□□ -0.45
COL4A6-208ENST00000538570 H3BQV1 296 aa12.26□□□□□ -0.45
COL4A6-208ENST00000538570 MARCH6O60337 910 aa12.26□□□□□ -0.45
COL4A6-208ENST00000538570 IFFO2Q5TF58 517 aa12.26□□□□□ -0.45
COL4A6-208ENST00000538570 CARMIL2Q6F5E8 1435 aa12.26□□□□□ -0.45
COL4A6-208ENST00000538570 GOLGA6L19H0YKK7 550 aa12.26□□□□□ -0.45
COL4A6-208ENST00000538570 SKOR2Q2VWA4 1001 aaPredicted RBP12.26□□□□□ -0.45
COL4A6-208ENST00000538570 PES1O00541 588 aaKnown RBP12.25□□□□□ -0.45
COL4A6-208ENST00000538570 PHLDB1Q86UU1 1377 aa12.25□□□□□ -0.45
COL4A6-208ENST00000538570 ABCC8Q09428 1581 aa12.25□□□□□ -0.45
COL4A6-208ENST00000538570 NOM1Q5C9Z4 860 aaKnown RBP12.25□□□□□ -0.45
COL4A6-208ENST00000538570 NLRP13Q86W25 1043 aa12.25□□□□□ -0.45
COL4A6-208ENST00000538570 CHMP4CQ96CF2 233 aa12.25□□□□□ -0.45
COL4A6-208ENST00000538570 NUP155O75694 1391 aa12.24□□□□□ -0.45
COL4A6-208ENST00000538570 G3V3G9 751 aa12.24□□□□□ -0.45
COL4A6-208ENST00000538570 DCAF8Q5TAQ9 597 aa12.24□□□□□ -0.45
COL4A6-208ENST00000538570 ATP6V1DQ9Y5K8 247 aa12.24□□□□□ -0.45
COL4A6-208ENST00000538570 TDRD9Q8NDG6 1382 aaKnown RBP12.24□□□□□ -0.45
COL4A6-208ENST00000538570 GPS2Q13227 327 aa12.24□□□□□ -0.45
COL4A6-208ENST00000538570 DDX49Q9Y6V7 483 aaKnown RBP12.24□□□□□ -0.45
COL4A6-208ENST00000538570 RAB3GAP2Q9H2M9 1393 aa12.24□□□□□ -0.45
COL4A6-208ENST00000538570 FAM184AQ8NB25 1140 aa12.24□□□□□ -0.45
COL4A6-208ENST00000538570 TPM2P07951 284 aa12.23□□□□□ -0.45
COL4A6-208ENST00000538570 VPS53Q5VIR6 699 aa12.23□□□□□ -0.45
COL4A6-208ENST00000538570 TPM1P09493 284 aa12.23□□□□□ -0.45
COL4A6-208ENST00000538570 CCDC70Q6NSX1 233 aa12.23□□□□□ -0.45
COL4A6-208ENST00000538570 CENPQQ7L2Z9 268 aaPredicted RBP12.23□□□□□ -0.45
COL4A6-208ENST00000538570 CCAR2Q8N163 923 aaKnown RBP12.23□□□□□ -0.45
COL4A6-208ENST00000538570 BECN2A8MW95 431 aa12.23□□□□□ -0.45
COL4A6-208ENST00000538570 ANKRD30AQ9BXX3 1397 aa12.23□□□□□ -0.45
COL4A6-208ENST00000538570 FAM161AQ3B820 660 aa12.22□□□□□ -0.45
COL4A6-208ENST00000538570 TOP2AP11388 1531 aaKnown RBP12.22□□□□□ -0.45
COL4A6-208ENST00000538570 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.22□□□□□ -0.45
COL4A6-208ENST00000538570 FMN1Q68DA7 1419 aa12.22□□□□□ -0.45
COL4A6-208ENST00000538570 FRAT2O75474 233 aaPredicted RBP12.21□□□□□ -0.45
COL4A6-208ENST00000538570 SLC4A3P48751 1232 aa12.21□□□□□ -0.45
COL4A6-208ENST00000538570 RILPL2Q969X0 211 aa12.21□□□□□ -0.45
COL4A6-208ENST00000538570 CADPSQ9ULU8 1353 aa12.21□□□□□ -0.45
COL4A6-208ENST00000538570 MAPK8IP2Q13387 824 aaPredicted RBP12.21□□□□□ -0.45
COL4A6-208ENST00000538570 STK11IPQ8N1F8 1099 aa12.21□□□□□ -0.45
COL4A6-208ENST00000538570 KANK4Q5T7N3 995 aaPredicted RBP12.2□□□□□ -0.46
COL4A6-208ENST00000538570 TEX35Q5T0J7 233 aa12.2□□□□□ -0.46
COL4A6-208ENST00000538570 FAM43AQ8N2R8 423 aa12.2□□□□□ -0.46
COL4A6-208ENST00000538570 AMPHP49418 695 aa12.2□□□□□ -0.46
COL4A6-208ENST00000538570 KIF15Q9NS87 1388 aa12.2□□□□□ -0.46
COL4A6-208ENST00000538570 AKAP17AQ02040 695 aaKnown RBP12.2□□□□□ -0.46
COL4A6-208ENST00000538570 ANKRD45Q5TZF3 282 aa12.19□□□□□ -0.46
COL4A6-208ENST00000538570 CCDC9Q9Y3X0 531 aaKnown RBP12.19□□□□□ -0.46
COL4A6-208ENST00000538570 PDE4AP27815 886 aa12.19□□□□□ -0.46
COL4A6-208ENST00000538570 MEX3CQ5U5Q3 659 aaKnown RBP12.18□□□□□ -0.46
COL4A6-208ENST00000538570 PDIA4P13667 645 aaKnown RBP12.18□□□□□ -0.46
COL4A6-208ENST00000538570 CCDC66A2RUB6 948 aa12.18□□□□□ -0.46
COL4A6-208ENST00000538570 NGDNQ8NEJ9 315 aaKnown RBP12.18□□□□□ -0.46
COL4A6-208ENST00000538570 MYBBP1AQ9BQG0 1328 aaKnown RBP12.17□□□□□ -0.46
COL4A6-208ENST00000538570 SYNE3Q6ZMZ3 975 aa12.17□□□□□ -0.46
COL4A6-208ENST00000538570 ZNF592Q92610 1267 aa12.17□□□□□ -0.46
COL4A6-208ENST00000538570 MAP7D2Q96T17 732 aa12.17□□□□□ -0.46
COL4A6-208ENST00000538570 AEBP1Q8IUX7 1158 aa12.17□□□□□ -0.46
COL4A6-208ENST00000538570 FOXD4L6Q3SYB3 417 aaPredicted RBP12.17□□□□□ -0.46
COL4A6-208ENST00000538570 FOXD4L3Q6VB84 417 aaPredicted RBP12.17□□□□□ -0.46
COL4A6-208ENST00000538570 GTF2E1P29083 439 aaPredicted RBP12.16□□□□□ -0.46
COL4A6-208ENST00000538570 EFCAB2Q5VUJ9 269 aa12.16□□□□□ -0.46
COL4A6-208ENST00000538570 MCTP1Q6DN14 999 aa12.16□□□□□ -0.46
COL4A6-208ENST00000538570 L3MBTL2Q969R5 705 aa12.15□□□□□ -0.46
COL4A6-208ENST00000538570 ZKSCAN2Q63HK3 967 aa12.15□□□□□ -0.46
COL4A6-208ENST00000538570 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.15□□□□□ -0.46
COL4A6-208ENST00000538570 LTV1Q96GA3 475 aaPredicted RBP12.15□□□□□ -0.46
COL4A6-208ENST00000538570 RRP7AQ9Y3A4 280 aaKnown RBP12.15□□□□□ -0.46
COL4A6-208ENST00000538570 MTERF4Q7Z6M4 381 aaKnown RBP12.15□□□□□ -0.46
COL4A6-208ENST00000538570 LRRFIP1Q32MZ4 808 aaKnown RBP12.15□□□□□ -0.46
COL4A6-208ENST00000538570 DIAPH3Q9NSV4 1193 aa12.15□□□□□ -0.46
COL4A6-208ENST00000538570 WIZO95785 1651 aa12.15□□□□□ -0.46
COL4A6-208ENST00000538570 IPO7O95373 1038 aaKnown RBP12.15□□□□□ -0.47
COL4A6-208ENST00000538570 CPLX2Q6PUV4 134 aaKnown RBP12.14□□□□□ -0.47
COL4A6-208ENST00000538570 TRIM29Q14134 588 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms