RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-216ENST00000538235 ITGAEP38570 1179 aa20.1■□□□□ 0.81
CHFR-216ENST00000538235 RRP7BPQ9NSQ0 103 aa20.1■□□□□ 0.81
CHFR-216ENST00000538235 ERBINQ96RT1 1412 aa20.1■□□□□ 0.81
CHFR-216ENST00000538235 ANKRD30AQ9BXX3 1397 aa20.08■□□□□ 0.81
CHFR-216ENST00000538235 UNC13BO14795 1591 aa20.08■□□□□ 0.81
CHFR-216ENST00000538235 VWDEQ8N2E2 1590 aa20.08■□□□□ 0.8
CHFR-216ENST00000538235 ROCK1Q13464 1354 aa20.08■□□□□ 0.8
CHFR-216ENST00000538235 ZC3H13Q5T200 1668 aaKnown RBP20.07■□□□□ 0.8
CHFR-216ENST00000538235 ABCC3O15438 1527 aa20.06■□□□□ 0.8
CHFR-216ENST00000538235 CAMSAP1Q5T5Y3 1602 aa20.05■□□□□ 0.8
CHFR-216ENST00000538235 KDM5DQ9BY66 1539 aa20.05■□□□□ 0.8
CHFR-216ENST00000538235 NAIPQ13075 1403 aa20.03■□□□□ 0.8
CHFR-216ENST00000538235 KIF3BO15066 747 aa20.03■□□□□ 0.8
CHFR-216ENST00000538235 ANKRD50Q9ULJ7 1429 aa20.02■□□□□ 0.8
CHFR-216ENST00000538235 FAM135AQ9P2D6 1515 aa20.01■□□□□ 0.79
CHFR-216ENST00000538235 GGT6Q6P531 493 aa19.99■□□□□ 0.79
CHFR-216ENST00000538235 IQGAP3Q86VI3 1631 aa19.98■□□□□ 0.79
CHFR-216ENST00000538235 CFAP65Q6ZU64 1925 aaKnown RBP19.98■□□□□ 0.79
CHFR-216ENST00000538235 HFM1A2PYH4 1435 aa19.98■□□□□ 0.79
CHFR-216ENST00000538235 CEBPAP49715 358 aaPredicted RBP19.97■□□□□ 0.79
CHFR-216ENST00000538235 PREX1Q8TCU6 1659 aa19.95■□□□□ 0.78
CHFR-216ENST00000538235 LMTK2Q8IWU2 1503 aa19.95■□□□□ 0.78
CHFR-216ENST00000538235 CNTLNQ9NXG0 1405 aa19.94■□□□□ 0.78
CHFR-216ENST00000538235 TET3O43151 1660 aa19.94■□□□□ 0.78
CHFR-216ENST00000538235 EFCAB6Q5THR3 1501 aa19.94■□□□□ 0.78
CHFR-216ENST00000538235 MYO3AQ8NEV4 1616 aa19.94■□□□□ 0.78
CHFR-216ENST00000538235 E9PCH4 1651 aa19.94■□□□□ 0.78
CHFR-216ENST00000538235 PLPPR3Q6T4P5 718 aa19.91■□□□□ 0.78
CHFR-216ENST00000538235 ZMYM3Q14202 1370 aa19.91■□□□□ 0.78
CHFR-216ENST00000538235 PZPP20742 1482 aa19.91■□□□□ 0.78
CHFR-216ENST00000538235 ZNF142P52746 1687 aaPredicted RBP19.9■□□□□ 0.78
CHFR-216ENST00000538235 SPATA31D1Q6ZQQ2 1576 aa19.89■□□□□ 0.77
CHFR-216ENST00000538235 LMTK3Q96Q04 1460 aa19.89■□□□□ 0.77
CHFR-216ENST00000538235 SYNMO15061 1565 aa19.87■□□□□ 0.77
CHFR-216ENST00000538235 NPATQ14207 1427 aa19.87■□□□□ 0.77
CHFR-216ENST00000538235 AEBP2Q6ZN18 517 aaPredicted RBP19.87■□□□□ 0.77
CHFR-216ENST00000538235 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.86■□□□□ 0.77
CHFR-216ENST00000538235 ERVK-7P63135 1459 aa19.86■□□□□ 0.77
CHFR-216ENST00000538235 SETD1BQ9UPS6 1966 aaKnown RBP19.85■□□□□ 0.77
CHFR-216ENST00000538235 WASHC2CQ9Y4E1 1318 aa19.84■□□□□ 0.77
CHFR-216ENST00000538235 FBXO31Q5XUX0 539 aaPredicted RBP19.84■□□□□ 0.77
CHFR-216ENST00000538235 PPP6R1Q9UPN7 881 aa19.83■□□□□ 0.77
CHFR-216ENST00000538235 ARHGAP31Q2M1Z3 1444 aa19.83■□□□□ 0.76
CHFR-216ENST00000538235 CEP170BQ9Y4F5 1589 aaPredicted RBP19.81■□□□□ 0.76
CHFR-216ENST00000538235 MYO5BQ9ULV0 1848 aa19.81■□□□□ 0.76
CHFR-216ENST00000538235 SPHKAPQ2M3C7 1700 aa19.8■□□□□ 0.76
CHFR-216ENST00000538235 UGGT1Q9NYU2 1555 aa19.8■□□□□ 0.76
CHFR-216ENST00000538235 SETD5Q9C0A6 1442 aa19.79■□□□□ 0.76
CHFR-216ENST00000538235 PIK3C2BO00750 1634 aa19.79■□□□□ 0.76
CHFR-216ENST00000538235 RAB3GAP2Q9H2M9 1393 aa19.79■□□□□ 0.76
CHFR-216ENST00000538235 NUP155O75694 1391 aa19.78■□□□□ 0.76
CHFR-216ENST00000538235 NOS1P29475 1434 aa19.77■□□□□ 0.76
CHFR-216ENST00000538235 UBR1Q8IWV7 1749 aa19.77■□□□□ 0.76
CHFR-216ENST00000538235 ESF1Q9H501 851 aaKnown RBP19.77■□□□□ 0.76
CHFR-216ENST00000538235 KANK1Q14678 1352 aa19.77■□□□□ 0.76
CHFR-216ENST00000538235 STRCQ7RTU9 1775 aa19.77■□□□□ 0.76
CHFR-216ENST00000538235 TNRQ92752 1358 aa19.75■□□□□ 0.75
CHFR-216ENST00000538235 RPRD2Q5VT52 1461 aaKnown RBP19.73■□□□□ 0.75
CHFR-216ENST00000538235 UHRF1BP1Q6BDS2 1440 aa19.73■□□□□ 0.75
CHFR-216ENST00000538235 CLTCL1P53675 1640 aa19.72■□□□□ 0.75
CHFR-216ENST00000538235 A2ML1A8K2U0 1454 aa19.71■□□□□ 0.75
CHFR-216ENST00000538235 PLA2R1Q13018 1463 aa19.71■□□□□ 0.75
CHFR-216ENST00000538235 HSPA2P54652 639 aa19.7■□□□□ 0.74
CHFR-216ENST00000538235 POLR1AO95602 1720 aaPredicted RBP19.68■□□□□ 0.74
CHFR-216ENST00000538235 NLRP1Q9C000 1473 aa19.67■□□□□ 0.74
CHFR-216ENST00000538235 TRPM2O94759 1503 aa19.67■□□□□ 0.74
CHFR-216ENST00000538235 TMEM131LA2VDJ0 1609 aa19.67■□□□□ 0.74
CHFR-216ENST00000538235 KDM5AP29375 1690 aaKnown RBP19.67■□□□□ 0.74
CHFR-216ENST00000538235 ADGRB3O60242 1522 aa19.66■□□□□ 0.74
CHFR-216ENST00000538235 NEURL4Q96JN8 1562 aa19.66■□□□□ 0.74
CHFR-216ENST00000538235 PTPRTO14522 1441 aa19.66■□□□□ 0.74
CHFR-216ENST00000538235 TRIM52Q96A61 297 aa19.63■□□□□ 0.73
CHFR-216ENST00000538235 FOXD1Q16676 465 aa19.62■□□□□ 0.73
CHFR-216ENST00000538235 TRIM26Q12899 539 aaPredicted RBP19.61■□□□□ 0.73
CHFR-216ENST00000538235 PKD2Q13563 968 aa19.59■□□□□ 0.73
CHFR-216ENST00000538235 KIF1BO60333 1816 aa19.59■□□□□ 0.73
CHFR-216ENST00000538235 IDI1Q13907 227 aa19.58■□□□□ 0.72
CHFR-216ENST00000538235 ARHGAP23Q9P227 1491 aa19.58■□□□□ 0.72
CHFR-216ENST00000538235 SLIT1O75093 1534 aa19.57■□□□□ 0.72
CHFR-216ENST00000538235 MPHOSPH9Q99550 1183 aa19.57■□□□□ 0.72
CHFR-216ENST00000538235 SLC4A1APQ9BWU0 796 aaKnown RBP19.57■□□□□ 0.72
CHFR-216ENST00000538235 IFT172Q9UG01 1749 aa19.54■□□□□ 0.72
CHFR-216ENST00000538235 IQGAP1P46940 1657 aa19.52■□□□□ 0.71
CHFR-216ENST00000538235 ZFYVE9O95405 1425 aa19.51■□□□□ 0.71
CHFR-216ENST00000538235 HRCP23327 699 aa19.51■□□□□ 0.71
CHFR-216ENST00000538235 PPLO60437 1756 aa19.51■□□□□ 0.71
CHFR-216ENST00000538235 NEXMIFQ5QGS0 1516 aa19.51■□□□□ 0.71
CHFR-216ENST00000538235 NRXN3Q9Y4C0 1643 aa19.49■□□□□ 0.71
CHFR-216ENST00000538235 NCKAP5LQ9HCH0 1330 aa19.49■□□□□ 0.71
CHFR-216ENST00000538235 STRCP1A6NGW2 1772 aa19.48■□□□□ 0.71
CHFR-216ENST00000538235 TMEM2Q9UHN6 1383 aa19.47■□□□□ 0.71
CHFR-216ENST00000538235 MED14O60244 1454 aa19.47■□□□□ 0.71
CHFR-216ENST00000538235 ANKRD30BQ9BXX2 1392 aa19.46■□□□□ 0.71
CHFR-216ENST00000538235 SPATA31E1Q6ZUB1 1445 aa19.46■□□□□ 0.71
CHFR-216ENST00000538235 SLC52A1Q9NWF4 448 aa19.46■□□□□ 0.71
CHFR-216ENST00000538235 SCAF11Q99590 1463 aaKnown RBP19.46■□□□□ 0.71
CHFR-216ENST00000538235 DHX57Q6P158 1386 aaKnown RBP19.45■□□□□ 0.7
CHFR-216ENST00000538235 LTKP29376 864 aa19.45■□□□□ 0.7
CHFR-216ENST00000538235 SETD1AO15047 1707 aaKnown RBP19.45■□□□□ 0.7
CHFR-216ENST00000538235 RIMS2Q9UQ26 1411 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms