RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 CFDP1Q9UEE9 299 aaPredicted RBP19.59■□□□□ 0.73
SYNE1-236ENST00000537750 PARD3Q8TEW0 1356 aa19.59■□□□□ 0.73
SYNE1-236ENST00000537750 IQGAP2Q13576 1575 aa19.58■□□□□ 0.73
SYNE1-236ENST00000537750 KDM2BQ8NHM5 1336 aa19.57■□□□□ 0.72
SYNE1-236ENST00000537750 C8orf34Q49A92 452 aa19.57■□□□□ 0.72
SYNE1-236ENST00000537750 PER1O15534 1290 aaPredicted RBP19.56■□□□□ 0.72
SYNE1-236ENST00000537750 FAM161AQ3B820 660 aa19.54■□□□□ 0.72
SYNE1-236ENST00000537750 RGS3P49796 1198 aa19.54■□□□□ 0.72
SYNE1-236ENST00000537750 NUP155O75694 1391 aa19.54■□□□□ 0.72
SYNE1-236ENST00000537750 CAMSAP2Q08AD1 1489 aa19.53■□□□□ 0.72
SYNE1-236ENST00000537750 KIAA0586Q9BVV6 1533 aa19.52■□□□□ 0.72
SYNE1-236ENST00000537750 CENPQQ7L2Z9 268 aaPredicted RBP19.52■□□□□ 0.71
SYNE1-236ENST00000537750 PRG4Q92954 1404 aaPredicted RBP19.51■□□□□ 0.71
SYNE1-236ENST00000537750 E9PCH4 1651 aa19.51■□□□□ 0.71
SYNE1-236ENST00000537750 ANKRD50Q9ULJ7 1429 aa19.5■□□□□ 0.71
SYNE1-236ENST00000537750 NBPF1Q3BBV0 1214 aa19.49■□□□□ 0.71
SYNE1-236ENST00000537750 NUP153P49790 1475 aaKnown RBP19.49■□□□□ 0.71
SYNE1-236ENST00000537750 ANKRD30AQ9BXX3 1397 aa19.48■□□□□ 0.71
SYNE1-236ENST00000537750 ADAMTS8Q9UP79 889 aa19.48■□□□□ 0.71
SYNE1-236ENST00000537750 BLMP54132 1417 aaPredicted RBP19.47■□□□□ 0.71
SYNE1-236ENST00000537750 PANK3Q9H999 370 aa19.46■□□□□ 0.71
SYNE1-236ENST00000537750 TARBP1Q13395 1621 aaKnown RBP19.45■□□□□ 0.7
SYNE1-236ENST00000537750 FAM43AQ8N2R8 423 aa19.45■□□□□ 0.7
SYNE1-236ENST00000537750 RGL3Q3MIN7 710 aa19.45■□□□□ 0.7
SYNE1-236ENST00000537750 ARHGEF12Q9NZN5 1544 aa19.44■□□□□ 0.7
SYNE1-236ENST00000537750 DUSP27Q5VZP5 1158 aa19.44■□□□□ 0.7
SYNE1-236ENST00000537750 POGKQ9P215 609 aa19.43■□□□□ 0.7
SYNE1-236ENST00000537750 GPATCH8Q9UKJ3 1502 aaKnown RBP19.43■□□□□ 0.7
SYNE1-236ENST00000537750 ADGRL2O95490 1459 aa19.43■□□□□ 0.7
SYNE1-236ENST00000537750 PDS5BQ9NTI5 1447 aa19.43■□□□□ 0.7
SYNE1-236ENST00000537750 PLEKHH1Q9ULM0 1364 aa19.42■□□□□ 0.7
SYNE1-236ENST00000537750 ADGBQ8N7X0 1667 aa19.42■□□□□ 0.7
SYNE1-236ENST00000537750 RSPH6AQ9H0K4 717 aa19.42■□□□□ 0.7
SYNE1-236ENST00000537750 DISP3Q9P2K9 1392 aa19.41■□□□□ 0.7
SYNE1-236ENST00000537750 ZMYM4Q5VZL5 1548 aa19.41■□□□□ 0.7
SYNE1-236ENST00000537750 TROQ12816 1431 aaPredicted RBP19.4■□□□□ 0.7
SYNE1-236ENST00000537750 DISP1Q96F81 1524 aa19.39■□□□□ 0.69
SYNE1-236ENST00000537750 ZNF608Q9ULD9 1512 aaPredicted RBP19.39■□□□□ 0.69
SYNE1-236ENST00000537750 ADAMTS12P58397 1594 aa19.39■□□□□ 0.69
SYNE1-236ENST00000537750 PBRM1Q86U86 1689 aa19.38■□□□□ 0.69
SYNE1-236ENST00000537750 TESK2Q96S53 571 aa19.38■□□□□ 0.69
SYNE1-236ENST00000537750 RAPGEF6Q8TEU7 1601 aa19.36■□□□□ 0.69
SYNE1-236ENST00000537750 SEC24BO95487 1268 aa19.36■□□□□ 0.69
SYNE1-236ENST00000537750 SLKQ9H2G2 1235 aaPredicted RBP19.36■□□□□ 0.69
SYNE1-236ENST00000537750 USP19O94966 1318 aa19.36■□□□□ 0.69
SYNE1-236ENST00000537750 KIAA0556O60303 1618 aa19.35■□□□□ 0.69
SYNE1-236ENST00000537750 GOLGA2Q08379 1002 aa19.35■□□□□ 0.69
SYNE1-236ENST00000537750 RRAGDQ9NQL2 400 aaPredicted RBP19.35■□□□□ 0.69
SYNE1-236ENST00000537750 INSRP06213 1382 aa19.35■□□□□ 0.69
SYNE1-236ENST00000537750 PRAG1Q86YV5 1406 aa19.35■□□□□ 0.69
SYNE1-236ENST00000537750 PLEKHH2Q8IVE3 1493 aa19.35■□□□□ 0.69
SYNE1-236ENST00000537750 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.34■□□□□ 0.69
SYNE1-236ENST00000537750 WDR43Q15061 677 aaKnown RBP eCLIP19.34■□□□□ 0.69
SYNE1-236ENST00000537750 CEP170Q5SW79 1584 aa19.34■□□□□ 0.69
SYNE1-236ENST00000537750 ARXQ96QS3 562 aa19.34■□□□□ 0.69
SYNE1-236ENST00000537750 IGHDP01880 384 aa19.33■□□□□ 0.69
SYNE1-236ENST00000537750 BCAR3O75815 825 aa19.33■□□□□ 0.68
SYNE1-236ENST00000537750 COL17A1Q9UMD9 1497 aaPredicted RBP19.32■□□□□ 0.68
SYNE1-236ENST00000537750 CROCC2H7BZ55 1655 aa19.32■□□□□ 0.68
SYNE1-236ENST00000537750 C9orf84Q5VXU9 1444 aa19.32■□□□□ 0.68
SYNE1-236ENST00000537750 SPINK5Q9NQ38 1064 aaPredicted RBP19.32■□□□□ 0.68
SYNE1-236ENST00000537750 ZNF521Q96K83 1311 aa19.31■□□□□ 0.68
SYNE1-236ENST00000537750 KDM5DQ9BY66 1539 aa19.31■□□□□ 0.68
SYNE1-236ENST00000537750 TSPY4P0CV99 314 aa19.31■□□□□ 0.68
SYNE1-236ENST00000537750 TSPY10P0CW01 314 aa19.31■□□□□ 0.68
SYNE1-236ENST00000537750 DNAJC5BQ9UF47 199 aa19.31■□□□□ 0.68
SYNE1-236ENST00000537750 ITSN2Q9NZM3 1697 aa19.31■□□□□ 0.68
SYNE1-236ENST00000537750 CCDC146Q8IYE0 955 aa19.3■□□□□ 0.68
SYNE1-236ENST00000537750 PPP2R1AP30153 589 aa19.3■□□□□ 0.68
SYNE1-236ENST00000537750 HNRNPMP52272 730 aaKnown RBP eCLIP19.3■□□□□ 0.68
SYNE1-236ENST00000537750 SLFN5Q08AF3 891 aa19.3■□□□□ 0.68
SYNE1-236ENST00000537750 TRPM1Q7Z4N2 1603 aa19.29■□□□□ 0.68
SYNE1-236ENST00000537750 PLB1Q6P1J6 1458 aa19.29■□□□□ 0.68
SYNE1-236ENST00000537750 TMF1P82094 1093 aa19.29■□□□□ 0.68
SYNE1-236ENST00000537750 ERBINQ96RT1 1412 aa19.28■□□□□ 0.68
SYNE1-236ENST00000537750 CCDC144AA2RUR9 1427 aa19.26■□□□□ 0.67
SYNE1-236ENST00000537750 KNSTRNQ9Y448 316 aa19.25■□□□□ 0.67
SYNE1-236ENST00000537750 GPRASP1Q5JY77 1395 aa19.25■□□□□ 0.67
SYNE1-236ENST00000537750 PTPRGP23470 1445 aa19.24■□□□□ 0.67
SYNE1-236ENST00000537750 BECN1Q14457 450 aa19.23■□□□□ 0.67
SYNE1-236ENST00000537750 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.23■□□□□ 0.67
SYNE1-236ENST00000537750 APAF1O14727 1248 aa19.23■□□□□ 0.67
SYNE1-236ENST00000537750 EIF3AQ14152 1382 aaKnown RBP19.22■□□□□ 0.67
SYNE1-236ENST00000537750 A2MP01023 1474 aa19.22■□□□□ 0.67
SYNE1-236ENST00000537750 TRMT2AQ8IZ69 625 aaKnown RBP19.22■□□□□ 0.67
SYNE1-236ENST00000537750 DMRT2Q9Y5R5 561 aa19.22■□□□□ 0.67
SYNE1-236ENST00000537750 MAGI2Q86UL8 1455 aa19.21■□□□□ 0.67
SYNE1-236ENST00000537750 L1TD1Q5T7N2 865 aaKnown RBP19.21■□□□□ 0.67
SYNE1-236ENST00000537750 ANTXR1Q9H6X2 564 aa19.21■□□□□ 0.67
SYNE1-236ENST00000537750 SPRYD3Q8NCJ5 442 aa19.2■□□□□ 0.66
SYNE1-236ENST00000537750 CDC42BPAQ5VT25 1732 aa19.2■□□□□ 0.66
SYNE1-236ENST00000537750 AMER1Q5JTC6 1135 aaPredicted RBP19.2■□□□□ 0.66
SYNE1-236ENST00000537750 PANK1Q8TE04 598 aa19.2■□□□□ 0.66
SYNE1-236ENST00000537750 COG6Q9Y2V7 657 aa19.2■□□□□ 0.66
SYNE1-236ENST00000537750 SHANK2Q9UPX8 1470 aa19.2■□□□□ 0.66
SYNE1-236ENST00000537750 FAM135AQ9P2D6 1515 aa19.2■□□□□ 0.66
SYNE1-236ENST00000537750 PLEKHD1A6NEE1 506 aa19.19■□□□□ 0.66
SYNE1-236ENST00000537750 GZF1Q9H116 711 aaPredicted RBP19.19■□□□□ 0.66
SYNE1-236ENST00000537750 PRDM15P57071 1507 aaPredicted RBP19.19■□□□□ 0.66
SYNE1-236ENST00000537750 ADCY10Q96PN6 1610 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms