RNA–Protein interactions for RNA: ENST00000537429.5

HMGA2-208, Transcript of high mobility group AT-hook 2, humanhuman

TSL 1 (best)

Gene HMGA2, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-208ENST00000537429 RNF17Q9BXT8 1623 aaKnown RBP36.14■■■■□ 3.38
HMGA2-208ENST00000537429 UNC13BO14795 1591 aa36.11■■■■□ 3.37
HMGA2-208ENST00000537429 MROH1Q8NDA8 1641 aa36.1■■■■□ 3.37
HMGA2-208ENST00000537429 GGT6Q6P531 493 aa36.09■■■■□ 3.37
HMGA2-208ENST00000537429 ACIN1Q9UKV3 1341 aaKnown RBP36.09■■■■□ 3.37
HMGA2-208ENST00000537429 PRDM15P57071 1507 aaPredicted RBP36.07■■■■□ 3.36
HMGA2-208ENST00000537429 MLECQ14165 292 aa36.06■■■■□ 3.36
HMGA2-208ENST00000537429 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.04■■■■□ 3.364e-9■□□□□ 8.3
HMGA2-208ENST00000537429 TRIM52Q96A61 297 aa36.03■■■■□ 3.36
HMGA2-208ENST00000537429 NUP155O75694 1391 aa36.02■■■■□ 3.36
HMGA2-208ENST00000537429 KDM5DQ9BY66 1539 aa36.01■■■■□ 3.35
HMGA2-208ENST00000537429 VWDEQ8N2E2 1590 aa36■■■■□ 3.35
HMGA2-208ENST00000537429 PPP6R1Q9UPN7 881 aa35.99■■■■□ 3.35
HMGA2-208ENST00000537429 KANK1Q14678 1352 aa35.98■■■■□ 3.35
HMGA2-208ENST00000537429 IQGAP3Q86VI3 1631 aa35.97■■■■□ 3.35
HMGA2-208ENST00000537429 FAM135AQ9P2D6 1515 aa35.93■■■■□ 3.34
HMGA2-208ENST00000537429 PZPP20742 1482 aa35.93■■■■□ 3.34
HMGA2-208ENST00000537429 WASHC2CQ9Y4E1 1318 aa35.92■■■■□ 3.34
HMGA2-208ENST00000537429 ABCC3O15438 1527 aa35.91■■■■□ 3.34
HMGA2-208ENST00000537429 LMTK2Q8IWU2 1503 aa35.9■■■■□ 3.34
HMGA2-208ENST00000537429 ZC3H13Q5T200 1668 aaKnown RBP35.9■■■■□ 3.34
HMGA2-208ENST00000537429 CEP152O94986 1710 aa35.89■■■■□ 3.34
HMGA2-208ENST00000537429 ESF1Q9H501 851 aaKnown RBP35.88■■■■□ 3.33
HMGA2-208ENST00000537429 MPHOSPH9Q99550 1183 aa35.87■■■■□ 3.33
HMGA2-208ENST00000537429 ADAMTSL3P82987 1691 aa35.86■■■■□ 3.33
HMGA2-208ENST00000537429 SLC4A1APQ9BWU0 796 aaKnown RBP35.86■■■■□ 3.33
HMGA2-208ENST00000537429 CLTCQ00610 1675 aaKnown RBP35.84■■■■□ 3.33
HMGA2-208ENST00000537429 TET3O43151 1660 aa35.83■■■■□ 3.33
HMGA2-208ENST00000537429 FER1L4A9Z1Z3 1794 aa35.82■■■■□ 3.33
HMGA2-208ENST00000537429 CNTLNQ9NXG0 1405 aa35.82■■■■□ 3.32
HMGA2-208ENST00000537429 CAMSAP1Q5T5Y3 1602 aa35.79■■■■□ 3.32
HMGA2-208ENST00000537429 MADDQ8WXG6 1647 aa35.79■■■■□ 3.32
HMGA2-208ENST00000537429 EFCAB6Q5THR3 1501 aa35.78■■■■□ 3.32
HMGA2-208ENST00000537429 DHX57Q6P158 1386 aaKnown RBP35.78■■■■□ 3.32
HMGA2-208ENST00000537429 PKD2Q13563 968 aa35.76■■■■□ 3.31
HMGA2-208ENST00000537429 MROH2AA6NES4 1674 aa35.75■■■■□ 3.31
HMGA2-208ENST00000537429 ARHGAP31Q2M1Z3 1444 aa35.74■■■■□ 3.31
HMGA2-208ENST00000537429 ZMYM3Q14202 1370 aa35.73■■■■□ 3.31
HMGA2-208ENST00000537429 E9PCH4 1651 aa35.73■■■■□ 3.31
HMGA2-208ENST00000537429 NPATQ14207 1427 aa35.71■■■■□ 3.31
HMGA2-208ENST00000537429 RIMS1Q86UR5 1692 aaKnown RBP35.7■■■■□ 3.3
HMGA2-208ENST00000537429 RPRD2Q5VT52 1461 aaKnown RBP35.69■■■■□ 3.3
HMGA2-208ENST00000537429 FOXD1Q16676 465 aa35.67■■■■□ 3.3
HMGA2-208ENST00000537429 KDM4FA0A1W2PPD8 638 aa35.64■■■■□ 3.3
HMGA2-208ENST00000537429 PLPPR3Q6T4P5 718 aa35.63■■■■□ 3.29
HMGA2-208ENST00000537429 C3P01024 1663 aa35.63■■■■□ 3.29
HMGA2-208ENST00000537429 CFAP65Q6ZU64 1925 aaKnown RBP35.58■■■■□ 3.29
HMGA2-208ENST00000537429 CEBPAP49715 358 aaPredicted RBP35.58■■■■□ 3.29
HMGA2-208ENST00000537429 FBXO31Q5XUX0 539 aaPredicted RBP35.57■■■■□ 3.29
HMGA2-208ENST00000537429 PTPRTO14522 1441 aa35.57■■■■□ 3.28
HMGA2-208ENST00000537429 PREX1Q8TCU6 1659 aa35.57■■■■□ 3.28
HMGA2-208ENST00000537429 PTPRMP28827 1452 aa35.56■■■■□ 3.28
HMGA2-208ENST00000537429 NOS1P29475 1434 aa35.56■■■■□ 3.28
HMGA2-208ENST00000537429 SPHKAPQ2M3C7 1700 aa35.55■■■■□ 3.28
HMGA2-208ENST00000537429 ERVK-7P63135 1459 aa35.55■■■■□ 3.28
HMGA2-208ENST00000537429 PLA2R1Q13018 1463 aa35.55■■■■□ 3.28
HMGA2-208ENST00000537429 ANKRD30BQ9BXX2 1392 aa35.55■■■■□ 3.28
HMGA2-208ENST00000537429 SPATA31D1Q6ZQQ2 1576 aa35.54■■■■□ 3.28
HMGA2-208ENST00000537429 CCER1Q8TC90 406 aaPredicted RBP35.52■■■■□ 3.28
HMGA2-208ENST00000537429 TRPM2O94759 1503 aa35.5■■■■□ 3.27
HMGA2-208ENST00000537429 SYNMO15061 1565 aa35.48■■■■□ 3.27
HMGA2-208ENST00000537429 CLSPNQ9HAW4 1339 aa35.46■■■■□ 3.27
HMGA2-208ENST00000537429 TNRQ92752 1358 aa35.42■■■■□ 3.26
HMGA2-208ENST00000537429 CCDC144AA2RUR9 1427 aa35.39■■■■□ 3.26
HMGA2-208ENST00000537429 PIK3C2BO00750 1634 aa35.39■■■■□ 3.26
HMGA2-208ENST00000537429 SLC52A1Q9NWF4 448 aa35.39■■■■□ 3.26
HMGA2-208ENST00000537429 UGGT1Q9NYU2 1555 aa35.39■■■■□ 3.26
HMGA2-208ENST00000537429 CLTCL1P53675 1640 aa35.38■■■■□ 3.25
HMGA2-208ENST00000537429 IDI1Q13907 227 aa35.35■■■■□ 3.25
HMGA2-208ENST00000537429 SIN3AQ96ST3 1273 aa35.35■■■■□ 3.25
HMGA2-208ENST00000537429 SETD1BQ9UPS6 1966 aaKnown RBP35.33■■■■□ 3.25
HMGA2-208ENST00000537429 NLRP1Q9C000 1473 aa35.3■■■■□ 3.24
HMGA2-208ENST00000537429 MYO3AQ8NEV4 1616 aa35.28■■■■□ 3.24
HMGA2-208ENST00000537429 NEUROD1Q13562 356 aa35.25■■■■□ 3.23
HMGA2-208ENST00000537429 KIF1BO60333 1816 aa35.24■■■■□ 3.23
HMGA2-208ENST00000537429 TMEM131LA2VDJ0 1609 aa35.21■■■■□ 3.23
HMGA2-208ENST00000537429 SPATA31E1Q6ZUB1 1445 aa35.2■■■■□ 3.23
HMGA2-208ENST00000537429 NEURL4Q96JN8 1562 aa35.19■■■■□ 3.22
HMGA2-208ENST00000537429 A2ML1A8K2U0 1454 aa35.19■■■■□ 3.22
HMGA2-208ENST00000537429 ADGRB3O60242 1522 aa35.19■■■■□ 3.22
HMGA2-208ENST00000537429 CHGAP10645 457 aaKnown RBP35.18■■■■□ 3.22
HMGA2-208ENST00000537429 UHRF1BP1Q6BDS2 1440 aa35.18■■■■□ 3.22
HMGA2-208ENST00000537429 CEP170BQ9Y4F5 1589 aaPredicted RBP35.18■■■■□ 3.22
HMGA2-208ENST00000537429 KDM5AP29375 1690 aaKnown RBP35.18■■■■□ 3.22
HMGA2-208ENST00000537429 STAG3Q9UJ98 1225 aa35.17■■■■□ 3.22
HMGA2-208ENST00000537429 ZNF142P52746 1687 aaPredicted RBP35.17■■■■□ 3.22
HMGA2-208ENST00000537429 UBR1Q8IWV7 1749 aa35.16■■■■□ 3.22
HMGA2-208ENST00000537429 MYO5BQ9ULV0 1848 aa35.13■■■■□ 3.21
HMGA2-208ENST00000537429 RGL3Q3MIN7 710 aa35.11■■■■□ 3.21
HMGA2-208ENST00000537429 AEBP2Q6ZN18 517 aaPredicted RBP35.06■■■■□ 3.2
HMGA2-208ENST00000537429 THEMISQ8N1K5 641 aaPredicted RBP35.06■■■■□ 3.2
HMGA2-208ENST00000537429 TONSLQ96HA7 1378 aa35.06■■■■□ 3.2
HMGA2-208ENST00000537429 ZNF326Q5BKZ1 582 aaKnown RBP35.06■■■■□ 3.2
HMGA2-208ENST00000537429 TIMELESSQ9UNS1 1208 aa35.04■■■■□ 3.2
HMGA2-208ENST00000537429 L3MBTL2Q969R5 705 aa35.03■■■■□ 3.2
HMGA2-208ENST00000537429 RPGRIP1LQ68CZ1 1315 aa35.02■■■■□ 3.2
HMGA2-208ENST00000537429 LMTK3Q96Q04 1460 aa35.01■■■■□ 3.19
HMGA2-208ENST00000537429 TMEM2Q9UHN6 1383 aa35■■■■□ 3.19
HMGA2-208ENST00000537429 NEXMIFQ5QGS0 1516 aa34.99■■■■□ 3.19
HMGA2-208ENST00000537429 SLIT1O75093 1534 aa34.99■■■■□ 3.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms