RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 PTPRMP28827 1452 aa18.22■□□□□ 0.51
CHD4-203ENST00000535717 PPP6R1Q9UPN7 881 aa18.22■□□□□ 0.51
CHD4-203ENST00000535717 MROH1Q8NDA8 1641 aa18.22■□□□□ 0.51
CHD4-203ENST00000535717 ESF1Q9H501 851 aaKnown RBP18.21■□□□□ 0.51
CHD4-203ENST00000535717 NAIPQ13075 1403 aa18.21■□□□□ 0.51
CHD4-203ENST00000535717 DEPDC5O75140 1603 aa18.2■□□□□ 0.5
CHD4-203ENST00000535717 HFM1A2PYH4 1435 aa18.19■□□□□ 0.5
CHD4-203ENST00000535717 CNTLNQ9NXG0 1405 aa18.19■□□□□ 0.5
CHD4-203ENST00000535717 CLTCQ00610 1675 aaKnown RBP18.18■□□□□ 0.5
CHD4-203ENST00000535717 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.18■□□□□ 0.53e-8■□□□□ 10.7
CHD4-203ENST00000535717 GCC2Q8IWJ2 1684 aa18.18■□□□□ 0.5
CHD4-203ENST00000535717 WASHC2CQ9Y4E1 1318 aa18.18■□□□□ 0.5
CHD4-203ENST00000535717 PRDM15P57071 1507 aaPredicted RBP18.18■□□□□ 0.5
CHD4-203ENST00000535717 KDM5DQ9BY66 1539 aa18.17■□□□□ 0.5
CHD4-203ENST00000535717 FAM135AQ9P2D6 1515 aa18.17■□□□□ 0.5
CHD4-203ENST00000535717 CEBPAP49715 358 aaPredicted RBP18.16■□□□□ 0.5
CHD4-203ENST00000535717 ZMYM3Q14202 1370 aa18.16■□□□□ 0.5
CHD4-203ENST00000535717 MROH2AA6NES4 1674 aa18.15■□□□□ 0.5
CHD4-203ENST00000535717 ABCC3O15438 1527 aa18.15■□□□□ 0.5
CHD4-203ENST00000535717 PLPPR3Q6T4P5 718 aa18.15■□□□□ 0.5
CHD4-203ENST00000535717 C3P01024 1663 aa18.14■□□□□ 0.49
CHD4-203ENST00000535717 UNC13BO14795 1591 aa18.13■□□□□ 0.49
CHD4-203ENST00000535717 VWDEQ8N2E2 1590 aa18.13■□□□□ 0.49
CHD4-203ENST00000535717 KANK1Q14678 1352 aa18.13■□□□□ 0.49
CHD4-203ENST00000535717 ZC3H13Q5T200 1668 aaKnown RBP18.12■□□□□ 0.49
CHD4-203ENST00000535717 CEP152O94986 1710 aa18.12■□□□□ 0.49
CHD4-203ENST00000535717 LMTK2Q8IWU2 1503 aa18.09■□□□□ 0.49
CHD4-203ENST00000535717 SETD5Q9C0A6 1442 aa18.08■□□□□ 0.49
CHD4-203ENST00000535717 NUP155O75694 1391 aa18.08■□□□□ 0.49
CHD4-203ENST00000535717 CAMSAP1Q5T5Y3 1602 aa18.08■□□□□ 0.48
CHD4-203ENST00000535717 PZPP20742 1482 aa18.07■□□□□ 0.48
CHD4-203ENST00000535717 TRIM26Q12899 539 aaPredicted RBP18.06■□□□□ 0.48
CHD4-203ENST00000535717 FBXO31Q5XUX0 539 aaPredicted RBP18.06■□□□□ 0.48
CHD4-203ENST00000535717 IQGAP3Q86VI3 1631 aa18.05■□□□□ 0.48
CHD4-203ENST00000535717 NPATQ14207 1427 aa18.05■□□□□ 0.48
CHD4-203ENST00000535717 ARHGAP31Q2M1Z3 1444 aa18.05■□□□□ 0.48
CHD4-203ENST00000535717 EFCAB6Q5THR3 1501 aa18.03■□□□□ 0.48
CHD4-203ENST00000535717 TRIM52Q96A61 297 aa18.03■□□□□ 0.48
CHD4-203ENST00000535717 RAB3GAP2Q9H2M9 1393 aa18.03■□□□□ 0.48
CHD4-203ENST00000535717 TET3O43151 1660 aa18.03■□□□□ 0.48
CHD4-203ENST00000535717 SETD1BQ9UPS6 1966 aaKnown RBP18■□□□□ 0.47
CHD4-203ENST00000535717 ERVK-7P63135 1459 aa18■□□□□ 0.47
CHD4-203ENST00000535717 CFAP65Q6ZU64 1925 aaKnown RBP18■□□□□ 0.47
CHD4-203ENST00000535717 TNRQ92752 1358 aa17.99■□□□□ 0.47
CHD4-203ENST00000535717 SPATA31D1Q6ZQQ2 1576 aa17.98■□□□□ 0.47
CHD4-203ENST00000535717 PREX1Q8TCU6 1659 aa17.98■□□□□ 0.47
CHD4-203ENST00000535717 E9PCH4 1651 aa17.97■□□□□ 0.47
CHD4-203ENST00000535717 RPRD2Q5VT52 1461 aaKnown RBP17.97■□□□□ 0.47
CHD4-203ENST00000535717 LMTK3Q96Q04 1460 aa17.96■□□□□ 0.47
CHD4-203ENST00000535717 HRCP23327 699 aa17.96■□□□□ 0.47
CHD4-203ENST00000535717 UHRF1BP1Q6BDS2 1440 aa17.96■□□□□ 0.47
CHD4-203ENST00000535717 ACIN1Q9UKV3 1341 aaKnown RBP17.96■□□□□ 0.46
CHD4-203ENST00000535717 SLC4A1APQ9BWU0 796 aaKnown RBP17.95■□□□□ 0.46
CHD4-203ENST00000535717 MYO3AQ8NEV4 1616 aa17.94■□□□□ 0.46
CHD4-203ENST00000535717 NOS1P29475 1434 aa17.94■□□□□ 0.46
CHD4-203ENST00000535717 SYNMO15061 1565 aa17.92■□□□□ 0.46
CHD4-203ENST00000535717 PKD2Q13563 968 aa17.92■□□□□ 0.46
CHD4-203ENST00000535717 MPHOSPH9Q99550 1183 aa17.92■□□□□ 0.46
CHD4-203ENST00000535717 NLRP1Q9C000 1473 aa17.91■□□□□ 0.46
CHD4-203ENST00000535717 A2ML1A8K2U0 1454 aa17.9■□□□□ 0.46
CHD4-203ENST00000535717 CEP170BQ9Y4F5 1589 aaPredicted RBP17.9■□□□□ 0.46
CHD4-203ENST00000535717 ZNF142P52746 1687 aaPredicted RBP17.9■□□□□ 0.46
CHD4-203ENST00000535717 HSPA2P54652 639 aa17.89■□□□□ 0.45
CHD4-203ENST00000535717 PTPRTO14522 1441 aa17.88■□□□□ 0.45
CHD4-203ENST00000535717 IDI1Q13907 227 aa17.87■□□□□ 0.45
CHD4-203ENST00000535717 FOXD1Q16676 465 aa17.87■□□□□ 0.45
CHD4-203ENST00000535717 SLC52A1Q9NWF4 448 aa17.86■□□□□ 0.45
CHD4-203ENST00000535717 SPHKAPQ2M3C7 1700 aa17.86■□□□□ 0.45
CHD4-203ENST00000535717 PLA2R1Q13018 1463 aa17.85■□□□□ 0.45
CHD4-203ENST00000535717 UGGT1Q9NYU2 1555 aa17.85■□□□□ 0.45
CHD4-203ENST00000535717 PIK3C2BO00750 1634 aa17.84■□□□□ 0.45
CHD4-203ENST00000535717 PCGF6Q9BYE7 350 aa17.84■□□□□ 0.45
CHD4-203ENST00000535717 TRPM2O94759 1503 aa17.82■□□□□ 0.44
CHD4-203ENST00000535717 UBR1Q8IWV7 1749 aa17.81■□□□□ 0.44
CHD4-203ENST00000535717 THEMISQ8N1K5 641 aaPredicted RBP17.81■□□□□ 0.44
CHD4-203ENST00000535717 ADGRB3O60242 1522 aa17.79■□□□□ 0.44
CHD4-203ENST00000535717 STAG3Q9UJ98 1225 aa17.79■□□□□ 0.44
CHD4-203ENST00000535717 CLTCL1P53675 1640 aa17.79■□□□□ 0.44
CHD4-203ENST00000535717 KDM5AP29375 1690 aaKnown RBP17.78■□□□□ 0.44
CHD4-203ENST00000535717 TMEM131LA2VDJ0 1609 aa17.77■□□□□ 0.44
CHD4-203ENST00000535717 STRCQ7RTU9 1775 aa17.76■□□□□ 0.43
CHD4-203ENST00000535717 CHGAP10645 457 aaKnown RBP17.76■□□□□ 0.43
CHD4-203ENST00000535717 MYO5BQ9ULV0 1848 aa17.75■□□□□ 0.43
CHD4-203ENST00000535717 NCKAP5LQ9HCH0 1330 aa17.74■□□□□ 0.43
CHD4-203ENST00000535717 ANKRD30BQ9BXX2 1392 aa17.74■□□□□ 0.43
CHD4-203ENST00000535717 TMEM2Q9UHN6 1383 aa17.74■□□□□ 0.43
CHD4-203ENST00000535717 ARHGAP23Q9P227 1491 aa17.74■□□□□ 0.43
CHD4-203ENST00000535717 CCDC144AA2RUR9 1427 aa17.73■□□□□ 0.43
CHD4-203ENST00000535717 SLIT1O75093 1534 aa17.73■□□□□ 0.43
CHD4-203ENST00000535717 ANKLE2Q86XL3 938 aa17.72■□□□□ 0.43
CHD4-203ENST00000535717 KIF1BO60333 1816 aa17.7■□□□□ 0.42
CHD4-203ENST00000535717 DHX57Q6P158 1386 aaKnown RBP17.7■□□□□ 0.42
CHD4-203ENST00000535717 LTKP29376 864 aa17.7■□□□□ 0.42
CHD4-203ENST00000535717 POLR1AO95602 1720 aaPredicted RBP17.69■□□□□ 0.42
CHD4-203ENST00000535717 TXNDC2Q86VQ3 553 aa17.69■□□□□ 0.42
CHD4-203ENST00000535717 ZFYVE9O95405 1425 aa17.69■□□□□ 0.42
CHD4-203ENST00000535717 NEURL4Q96JN8 1562 aa17.69■□□□□ 0.42
CHD4-203ENST00000535717 RIMS2Q9UQ26 1411 aa17.68■□□□□ 0.42
CHD4-203ENST00000535717 EID1Q9Y6B2 187 aa17.68■□□□□ 0.42
CHD4-203ENST00000535717 SCAF11Q99590 1463 aaKnown RBP17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms