RNA–Protein interactions for RNA: ENST00000533244.5

CCS-208, Transcript of copper chaperone for superoxide dismutase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCS, Length 1,430 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-208ENST00000533244 ERBINQ96RT1 1412 aa31.45■■■□□ 2.63
CCS-208ENST00000533244 ANKRD30AQ9BXX3 1397 aa31.45■■■□□ 2.63
CCS-208ENST00000533244 LMTK3Q96Q04 1460 aa31.45■■■□□ 2.62
CCS-208ENST00000533244 PLPPR3Q6T4P5 718 aa31.44■■■□□ 2.62
CCS-208ENST00000533244 PTPRKQ15262 1439 aa31.43■■■□□ 2.62
CCS-208ENST00000533244 RRBP1Q9P2E9 1410 aaKnown RBP31.43■■■□□ 2.62
CCS-208ENST00000533244 RRP7BPQ9NSQ0 103 aa31.42■■■□□ 2.62
CCS-208ENST00000533244 CHIC2Q9UKJ5 165 aa31.42■■■□□ 2.62
CCS-208ENST00000533244 ZMYM3Q14202 1370 aa31.42■■■□□ 2.62
CCS-208ENST00000533244 KDM5DQ9BY66 1539 aa31.42■■■□□ 2.62
CCS-208ENST00000533244 MROH1Q8NDA8 1641 aa31.41■■■□□ 2.62
CCS-208ENST00000533244 PREX1Q8TCU6 1659 aa31.38■■■□□ 2.61
CCS-208ENST00000533244 SETD1BQ9UPS6 1966 aaKnown RBP31.37■■■□□ 2.61
CCS-208ENST00000533244 NPATQ14207 1427 aa31.37■■■□□ 2.61
CCS-208ENST00000533244 DEPDC5O75140 1603 aa31.34■■■□□ 2.61
CCS-208ENST00000533244 PRDM15P57071 1507 aaPredicted RBP31.34■■■□□ 2.61
CCS-208ENST00000533244 ZC3H13Q5T200 1668 aaKnown RBP31.34■■■□□ 2.61
CCS-208ENST00000533244 ROCK1Q13464 1354 aa31.33■■■□□ 2.61
CCS-208ENST00000533244 ABCC3O15438 1527 aa31.31■■■□□ 2.6
CCS-208ENST00000533244 WASHC2CQ9Y4E1 1318 aa31.31■■■□□ 2.6
CCS-208ENST00000533244 UHRF1BP1Q6BDS2 1440 aa31.28■■■□□ 2.6
CCS-208ENST00000533244 PZPP20742 1482 aa31.28■■■□□ 2.6
CCS-208ENST00000533244 ANKRD50Q9ULJ7 1429 aa31.25■■■□□ 2.59
CCS-208ENST00000533244 CEP152O94986 1710 aa31.23■■■□□ 2.59
CCS-208ENST00000533244 VWDEQ8N2E2 1590 aa31.23■■■□□ 2.59
CCS-208ENST00000533244 CAMSAP1Q5T5Y3 1602 aa31.2■■■□□ 2.58
CCS-208ENST00000533244 MYO3AQ8NEV4 1616 aa31.19■■■□□ 2.58
CCS-208ENST00000533244 ITGAEP38570 1179 aa31.19■■■□□ 2.58
CCS-208ENST00000533244 HSPA2P54652 639 aa31.19■■■□□ 2.58
CCS-208ENST00000533244 LMTK2Q8IWU2 1503 aa31.17■■■□□ 2.58
CCS-208ENST00000533244 ZNF142P52746 1687 aaPredicted RBP31.16■■■□□ 2.58
CCS-208ENST00000533244 FBXO31Q5XUX0 539 aaPredicted RBP31.15■■■□□ 2.58
CCS-208ENST00000533244 ARHGAP31Q2M1Z3 1444 aa31.14■■■□□ 2.58
CCS-208ENST00000533244 KANK1Q14678 1352 aa31.14■■■□□ 2.58
CCS-208ENST00000533244 UNC13BO14795 1591 aa31.12■■■□□ 2.57
CCS-208ENST00000533244 SPATA31D1Q6ZQQ2 1576 aa31.12■■■□□ 2.57
CCS-208ENST00000533244 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.12■■■□□ 2.574e-7■■■□□ 17.7
CCS-208ENST00000533244 TNRQ92752 1358 aa31.11■■■□□ 2.57
CCS-208ENST00000533244 CEP170BQ9Y4F5 1589 aaPredicted RBP31.11■■■□□ 2.57
CCS-208ENST00000533244 ERVK-7P63135 1459 aa31.09■■■□□ 2.57
CCS-208ENST00000533244 A2ML1A8K2U0 1454 aa31.06■■■□□ 2.56
CCS-208ENST00000533244 EFCAB6Q5THR3 1501 aa31.05■■■□□ 2.56
CCS-208ENST00000533244 GCC2Q8IWJ2 1684 aa31.04■■■□□ 2.56
CCS-208ENST00000533244 STRCQ7RTU9 1775 aa31.04■■■□□ 2.56
CCS-208ENST00000533244 NAIPQ13075 1403 aa31.03■■■□□ 2.56
CCS-208ENST00000533244 NLRP1Q9C000 1473 aa31.03■■■□□ 2.56
CCS-208ENST00000533244 HFM1A2PYH4 1435 aa31■■■□□ 2.55
CCS-208ENST00000533244 TET3O43151 1660 aa31■■■□□ 2.55
CCS-208ENST00000533244 IQGAP3Q86VI3 1631 aa30.99■■■□□ 2.55
CCS-208ENST00000533244 CFAP65Q6ZU64 1925 aaKnown RBP30.97■■■□□ 2.55
CCS-208ENST00000533244 PLA2R1Q13018 1463 aa30.97■■■□□ 2.55
CCS-208ENST00000533244 RPRD2Q5VT52 1461 aaKnown RBP30.95■■■□□ 2.55
CCS-208ENST00000533244 NOS1P29475 1434 aa30.93■■■□□ 2.54
CCS-208ENST00000533244 UGGT1Q9NYU2 1555 aa30.91■■■□□ 2.54
CCS-208ENST00000533244 NUP155O75694 1391 aa30.91■■■□□ 2.54
CCS-208ENST00000533244 SYNMO15061 1565 aa30.89■■■□□ 2.54
CCS-208ENST00000533244 PTPRTO14522 1441 aa30.87■■■□□ 2.53
CCS-208ENST00000533244 E9PCH4 1651 aa30.87■■■□□ 2.53
CCS-208ENST00000533244 DMRT2Q9Y5R5 561 aa30.85■■■□□ 2.53
CCS-208ENST00000533244 UBR1Q8IWV7 1749 aa30.84■■■□□ 2.53
CCS-208ENST00000533244 THEMISQ8N1K5 641 aaPredicted RBP30.82■■■□□ 2.52
CCS-208ENST00000533244 PKD2Q13563 968 aa30.81■■■□□ 2.52
CCS-208ENST00000533244 PIK3C2BO00750 1634 aa30.81■■■□□ 2.52
CCS-208ENST00000533244 KDM5AP29375 1690 aaKnown RBP30.8■■■□□ 2.52
CCS-208ENST00000533244 NCKAP5LQ9HCH0 1330 aa30.8■■■□□ 2.52
CCS-208ENST00000533244 POLR1AO95602 1720 aaPredicted RBP30.79■■■□□ 2.52
CCS-208ENST00000533244 NEURL4Q96JN8 1562 aa30.77■■■□□ 2.52
CCS-208ENST00000533244 IDI1Q13907 227 aa30.75■■■□□ 2.51
CCS-208ENST00000533244 SLC52A1Q9NWF4 448 aa30.74■■■□□ 2.51
CCS-208ENST00000533244 ARHGAP23Q9P227 1491 aa30.74■■■□□ 2.51
CCS-208ENST00000533244 SLIT1O75093 1534 aa30.72■■■□□ 2.51
CCS-208ENST00000533244 ADGRB3O60242 1522 aa30.72■■■□□ 2.51
CCS-208ENST00000533244 MED14O60244 1454 aa30.7■■■□□ 2.51
CCS-208ENST00000533244 ANKLE2Q86XL3 938 aa30.7■■■□□ 2.5
CCS-208ENST00000533244 SPHKAPQ2M3C7 1700 aa30.67■■■□□ 2.5
CCS-208ENST00000533244 SETD5Q9C0A6 1442 aa30.66■■■□□ 2.5
CCS-208ENST00000533244 TRIM52Q96A61 297 aa30.64■■■□□ 2.5
CCS-208ENST00000533244 TMEM2Q9UHN6 1383 aa30.64■■■□□ 2.5
CCS-208ENST00000533244 TMEM131LA2VDJ0 1609 aa30.63■■■□□ 2.49
CCS-208ENST00000533244 SCAF11Q99590 1463 aaKnown RBP30.63■■■□□ 2.49
CCS-208ENST00000533244 NPHP4O75161 1426 aaPredicted RBP30.62■■■□□ 2.49
CCS-208ENST00000533244 STAG3Q9UJ98 1225 aa30.62■■■□□ 2.49
CCS-208ENST00000533244 IQGAP1P46940 1657 aa30.6■■■□□ 2.49
CCS-208ENST00000533244 LTBP4Q8N2S1 1624 aa30.59■■■□□ 2.49
CCS-208ENST00000533244 TRPM2O94759 1503 aa30.59■■■□□ 2.49
CCS-208ENST00000533244 LTKP29376 864 aa30.58■■■□□ 2.49
CCS-208ENST00000533244 ACIN1Q9UKV3 1341 aaKnown RBP30.58■■■□□ 2.49
CCS-208ENST00000533244 MYO5BQ9ULV0 1848 aa30.58■■■□□ 2.49
CCS-208ENST00000533244 SLC4A1APQ9BWU0 796 aaKnown RBP30.56■■■□□ 2.48
CCS-208ENST00000533244 RAB3GAP2Q9H2M9 1393 aa30.56■■■□□ 2.48
CCS-208ENST00000533244 TXNDC2Q86VQ3 553 aa30.55■■■□□ 2.48
CCS-208ENST00000533244 ZFYVE9O95405 1425 aa30.53■■■□□ 2.48
CCS-208ENST00000533244 EID1Q9Y6B2 187 aa30.53■■■□□ 2.48
CCS-208ENST00000533244 CLTCL1P53675 1640 aa30.52■■■□□ 2.48
CCS-208ENST00000533244 ZNF335Q9H4Z2 1342 aaPredicted RBP30.51■■■□□ 2.48
CCS-208ENST00000533244 CERKQ8TCT0 537 aa30.5■■■□□ 2.47
CCS-208ENST00000533244 MPHOSPH9Q99550 1183 aa30.48■■■□□ 2.47
CCS-208ENST00000533244 RIMS2Q9UQ26 1411 aa30.47■■■□□ 2.47
CCS-208ENST00000533244 CHGAP10645 457 aaKnown RBP30.44■■■□□ 2.46
CCS-208ENST00000533244 HRCP23327 699 aa30.44■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms