RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ADGRL2O95490 1459 aa30.36■■■□□ 2.45
CPSF1-209ENST00000532725 ITGAEP38570 1179 aa30.32■■■□□ 2.44
CPSF1-209ENST00000532725 ERBINQ96RT1 1412 aa30.31■■■□□ 2.44
CPSF1-209ENST00000532725 WASHC2CQ9Y4E1 1318 aa30.3■■■□□ 2.44
CPSF1-209ENST00000532725 EIF2AK4Q9P2K8 1649 aaKnown RBP30.29■■■□□ 2.44
CPSF1-209ENST00000532725 ROCK1Q13464 1354 aa30.28■■■□□ 2.44
CPSF1-209ENST00000532725 C3P01024 1663 aa30.27■■■□□ 2.44
CPSF1-209ENST00000532725 CLTCQ00610 1675 aaKnown RBP30.27■■■□□ 2.44
CPSF1-209ENST00000532725 MROH2AA6NES4 1674 aa30.26■■■□□ 2.43
CPSF1-209ENST00000532725 RNF17Q9BXT8 1623 aaKnown RBP30.25■■■□□ 2.43
CPSF1-209ENST00000532725 SETD1BQ9UPS6 1966 aaKnown RBP30.23■■■□□ 2.43
CPSF1-209ENST00000532725 FAM135AQ9P2D6 1515 aa30.22■■■□□ 2.43
CPSF1-209ENST00000532725 KDM5DQ9BY66 1539 aa30.21■■■□□ 2.43
CPSF1-209ENST00000532725 ANKRD50Q9ULJ7 1429 aa30.21■■■□□ 2.43
CPSF1-209ENST00000532725 LMTK3Q96Q04 1460 aa30.2■■■□□ 2.43
CPSF1-209ENST00000532725 MROH1Q8NDA8 1641 aa30.2■■■□□ 2.43
CPSF1-209ENST00000532725 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.19■■■□□ 2.42
CPSF1-209ENST00000532725 NPATQ14207 1427 aa30.19■■■□□ 2.42
CPSF1-209ENST00000532725 FBXO31Q5XUX0 539 aaPredicted RBP30.15■■■□□ 2.42
CPSF1-209ENST00000532725 ABCC3O15438 1527 aa30.15■■■□□ 2.42
CPSF1-209ENST00000532725 HSPA2P54652 639 aa30.12■■■□□ 2.41
CPSF1-209ENST00000532725 PRDM15P57071 1507 aaPredicted RBP30.12■■■□□ 2.41
CPSF1-209ENST00000532725 DEPDC5O75140 1603 aa30.11■■■□□ 2.41
CPSF1-209ENST00000532725 PZPP20742 1482 aa30.11■■■□□ 2.41
CPSF1-209ENST00000532725 KANK1Q14678 1352 aa30.1■■■□□ 2.41
CPSF1-209ENST00000532725 UHRF1BP1Q6BDS2 1440 aa30.1■■■□□ 2.41
CPSF1-209ENST00000532725 PREX1Q8TCU6 1659 aa30.08■■■□□ 2.41
CPSF1-209ENST00000532725 ZC3H13Q5T200 1668 aaKnown RBP30.07■■■□□ 2.4
CPSF1-209ENST00000532725 VWDEQ8N2E2 1590 aa30.05■■■□□ 2.4
CPSF1-209ENST00000532725 ARHGAP31Q2M1Z3 1444 aa30.03■■■□□ 2.4
CPSF1-209ENST00000532725 CEP152O94986 1710 aa30.02■■■□□ 2.4
CPSF1-209ENST00000532725 TNRQ92752 1358 aa30.02■■■□□ 2.4
CPSF1-209ENST00000532725 LMTK2Q8IWU2 1503 aa30.01■■■□□ 2.39
CPSF1-209ENST00000532725 NAIPQ13075 1403 aa30■■■□□ 2.39
CPSF1-209ENST00000532725 CAMSAP1Q5T5Y3 1602 aa29.98■■■□□ 2.39
CPSF1-209ENST00000532725 HFM1A2PYH4 1435 aa29.95■■■□□ 2.38
CPSF1-209ENST00000532725 UNC13BO14795 1591 aa29.94■■■□□ 2.38
CPSF1-209ENST00000532725 ERVK-7P63135 1459 aa29.93■■■□□ 2.38
CPSF1-209ENST00000532725 NUP155O75694 1391 aa29.93■■■□□ 2.38
CPSF1-209ENST00000532725 SPATA31D1Q6ZQQ2 1576 aa29.93■■■□□ 2.38
CPSF1-209ENST00000532725 CFAP65Q6ZU64 1925 aaKnown RBP29.91■■■□□ 2.38
CPSF1-209ENST00000532725 MYO3AQ8NEV4 1616 aa29.91■■■□□ 2.38
CPSF1-209ENST00000532725 A2ML1A8K2U0 1454 aa29.9■■■□□ 2.38
CPSF1-209ENST00000532725 CEP170BQ9Y4F5 1589 aaPredicted RBP29.88■■■□□ 2.37
CPSF1-209ENST00000532725 NLRP1Q9C000 1473 aa29.87■■■□□ 2.37
CPSF1-209ENST00000532725 EFCAB6Q5THR3 1501 aa29.86■■■□□ 2.37
CPSF1-209ENST00000532725 ZNF142P52746 1687 aaPredicted RBP29.85■■■□□ 2.37
CPSF1-209ENST00000532725 GCC2Q8IWJ2 1684 aa29.85■■■□□ 2.37
CPSF1-209ENST00000532725 IQGAP3Q86VI3 1631 aa29.82■■■□□ 2.36
CPSF1-209ENST00000532725 NOS1P29475 1434 aa29.82■■■□□ 2.36
CPSF1-209ENST00000532725 THEMISQ8N1K5 641 aaPredicted RBP29.82■■■□□ 2.36
CPSF1-209ENST00000532725 TET3O43151 1660 aa29.82■■■□□ 2.36
CPSF1-209ENST00000532725 RPRD2Q5VT52 1461 aaKnown RBP29.81■■■□□ 2.36
CPSF1-209ENST00000532725 STRCQ7RTU9 1775 aa29.8■■■□□ 2.36
CPSF1-209ENST00000532725 IDI1Q13907 227 aa29.79■■■□□ 2.36
CPSF1-209ENST00000532725 DMRT2Q9Y5R5 561 aa29.79■■■□□ 2.36
CPSF1-209ENST00000532725 NCKAP5LQ9HCH0 1330 aa29.77■■■□□ 2.36
CPSF1-209ENST00000532725 TRIM52Q96A61 297 aa29.77■■■□□ 2.36
CPSF1-209ENST00000532725 PLA2R1Q13018 1463 aa29.76■■■□□ 2.35
CPSF1-209ENST00000532725 PKD2Q13563 968 aa29.76■■■□□ 2.35
CPSF1-209ENST00000532725 SLC52A1Q9NWF4 448 aa29.76■■■□□ 2.35
CPSF1-209ENST00000532725 UGGT1Q9NYU2 1555 aa29.76■■■□□ 2.35
CPSF1-209ENST00000532725 SYNMO15061 1565 aa29.73■■■□□ 2.35
CPSF1-209ENST00000532725 E9PCH4 1651 aa29.72■■■□□ 2.35
CPSF1-209ENST00000532725 SETD5Q9C0A6 1442 aa29.71■■■□□ 2.35
CPSF1-209ENST00000532725 ANKLE2Q86XL3 938 aa29.7■■■□□ 2.35
CPSF1-209ENST00000532725 PTPRTO14522 1441 aa29.7■■■□□ 2.34
CPSF1-209ENST00000532725 SLC4A1APQ9BWU0 796 aaKnown RBP29.66■■■□□ 2.34
CPSF1-209ENST00000532725 STAG3Q9UJ98 1225 aa29.66■■■□□ 2.34
CPSF1-209ENST00000532725 PIK3C2BO00750 1634 aa29.64■■■□□ 2.34
CPSF1-209ENST00000532725 UBR1Q8IWV7 1749 aa29.64■■■□□ 2.34
CPSF1-209ENST00000532725 ACIN1Q9UKV3 1341 aaKnown RBP29.64■■■□□ 2.34
CPSF1-209ENST00000532725 LTKP29376 864 aa29.6■■■□□ 2.33
CPSF1-209ENST00000532725 MPHOSPH9Q99550 1183 aa29.6■■■□□ 2.33
CPSF1-209ENST00000532725 RAB3GAP2Q9H2M9 1393 aa29.6■■■□□ 2.33
CPSF1-209ENST00000532725 TXNDC2Q86VQ3 553 aa29.58■■■□□ 2.33
CPSF1-209ENST00000532725 ARHGAP23Q9P227 1491 aa29.58■■■□□ 2.33
CPSF1-209ENST00000532725 TMEM2Q9UHN6 1383 aa29.58■■■□□ 2.33
CPSF1-209ENST00000532725 HRCP23327 699 aa29.57■■■□□ 2.32
CPSF1-209ENST00000532725 SLIT1O75093 1534 aa29.56■■■□□ 2.32
CPSF1-209ENST00000532725 KDM5AP29375 1690 aaKnown RBP29.56■■■□□ 2.32
CPSF1-209ENST00000532725 MED14O60244 1454 aa29.55■■■□□ 2.32
CPSF1-209ENST00000532725 EID1Q9Y6B2 187 aa29.54■■■□□ 2.32
CPSF1-209ENST00000532725 NEURL4Q96JN8 1562 aa29.54■■■□□ 2.32
CPSF1-209ENST00000532725 ADGRB3O60242 1522 aa29.53■■■□□ 2.32
CPSF1-209ENST00000532725 CHGAP10645 457 aaKnown RBP29.52■■■□□ 2.32
CPSF1-209ENST00000532725 FOXD1Q16676 465 aa29.52■■■□□ 2.32
CPSF1-209ENST00000532725 NPHP4O75161 1426 aaPredicted RBP29.51■■■□□ 2.31
CPSF1-209ENST00000532725 POLR1AO95602 1720 aaPredicted RBP29.5■■■□□ 2.31
CPSF1-209ENST00000532725 TMEM131LA2VDJ0 1609 aa29.49■■■□□ 2.31
CPSF1-209ENST00000532725 SCAF11Q99590 1463 aaKnown RBP29.49■■■□□ 2.31
CPSF1-209ENST00000532725 SPHKAPQ2M3C7 1700 aa29.49■■■□□ 2.31
CPSF1-209ENST00000532725 TRPM2O94759 1503 aa29.45■■■□□ 2.31
CPSF1-209ENST00000532725 HDGFP51858 240 aaKnown RBP29.44■■■□□ 2.3
CPSF1-209ENST00000532725 ZNF335Q9H4Z2 1342 aaPredicted RBP29.44■■■□□ 2.3
CPSF1-209ENST00000532725 ZFYVE9O95405 1425 aa29.43■■■□□ 2.3
CPSF1-209ENST00000532725 CERKQ8TCT0 537 aa29.42■■■□□ 2.3
CPSF1-209ENST00000532725 MYO5BQ9ULV0 1848 aa29.41■■■□□ 2.3
CPSF1-209ENST00000532725 RIMS2Q9UQ26 1411 aa29.41■■■□□ 2.3
CPSF1-209ENST00000532725 CLTCL1P53675 1640 aa29.39■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms