RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 CLTCQ00610 1675 aaKnown RBP23.09■■□□□ 1.29
CPSF1-208ENST00000532560 NCOA1Q15788 1441 aa23.09■■□□□ 1.29
CPSF1-208ENST00000532560 KDM5DQ9BY66 1539 aa23.08■■□□□ 1.28
CPSF1-208ENST00000532560 RRP7BPQ9NSQ0 103 aa23.06■■□□□ 1.28
CPSF1-208ENST00000532560 CHIC2Q9UKJ5 165 aa23.06■■□□□ 1.28
CPSF1-208ENST00000532560 PTPRKQ15262 1439 aa23.06■■□□□ 1.28
CPSF1-208ENST00000532560 CEBPAP49715 358 aaPredicted RBP23.05■■□□□ 1.28
CPSF1-208ENST00000532560 MROH1Q8NDA8 1641 aa23.04■■□□□ 1.28
CPSF1-208ENST00000532560 PLPPR3Q6T4P5 718 aa23.04■■□□□ 1.28
CPSF1-208ENST00000532560 LMTK3Q96Q04 1460 aa23.04■■□□□ 1.28
CPSF1-208ENST00000532560 ZMYM3Q14202 1370 aa23.03■■□□□ 1.28
CPSF1-208ENST00000532560 ZC3H13Q5T200 1668 aaKnown RBP23.02■■□□□ 1.28
CPSF1-208ENST00000532560 PREX1Q8TCU6 1659 aa23.02■■□□□ 1.28
CPSF1-208ENST00000532560 PRDM15P57071 1507 aaPredicted RBP23.02■■□□□ 1.28
CPSF1-208ENST00000532560 ROCK1Q13464 1354 aa23.01■■□□□ 1.27
CPSF1-208ENST00000532560 NPATQ14207 1427 aa23.01■■□□□ 1.27
CPSF1-208ENST00000532560 DEPDC5O75140 1603 aa23■■□□□ 1.27
CPSF1-208ENST00000532560 ABCC3O15438 1527 aa22.98■■□□□ 1.27
CPSF1-208ENST00000532560 SETD1BQ9UPS6 1966 aaKnown RBP22.98■■□□□ 1.27
CPSF1-208ENST00000532560 WASHC2CQ9Y4E1 1318 aa22.97■■□□□ 1.27
CPSF1-208ENST00000532560 ANKRD50Q9ULJ7 1429 aa22.96■■□□□ 1.27
CPSF1-208ENST00000532560 PZPP20742 1482 aa22.96■■□□□ 1.27
CPSF1-208ENST00000532560 UHRF1BP1Q6BDS2 1440 aa22.95■■□□□ 1.26
CPSF1-208ENST00000532560 CEP152O94986 1710 aa22.93■■□□□ 1.26
CPSF1-208ENST00000532560 CAMSAP1Q5T5Y3 1602 aa22.91■■□□□ 1.26
CPSF1-208ENST00000532560 ITGAEP38570 1179 aa22.91■■□□□ 1.26
CPSF1-208ENST00000532560 VWDEQ8N2E2 1590 aa22.91■■□□□ 1.26
CPSF1-208ENST00000532560 ILDR1Q86SU0 546 aaPredicted RBP22.9■■□□□ 1.26
CPSF1-208ENST00000532560 MYO3AQ8NEV4 1616 aa22.89■■□□□ 1.25
CPSF1-208ENST00000532560 KANK1Q14678 1352 aa22.89■■□□□ 1.25
CPSF1-208ENST00000532560 LMTK2Q8IWU2 1503 aa22.88■■□□□ 1.25
CPSF1-208ENST00000532560 UNC13BO14795 1591 aa22.87■■□□□ 1.25
CPSF1-208ENST00000532560 ZNF142P52746 1687 aaPredicted RBP22.87■■□□□ 1.25
CPSF1-208ENST00000532560 ARHGAP31Q2M1Z3 1444 aa22.85■■□□□ 1.25
CPSF1-208ENST00000532560 HSPA2P54652 639 aa22.84■■□□□ 1.25
CPSF1-208ENST00000532560 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.84■■□□□ 1.25
CPSF1-208ENST00000532560 TNRQ92752 1358 aa22.84■■□□□ 1.25
CPSF1-208ENST00000532560 SPATA31D1Q6ZQQ2 1576 aa22.84■■□□□ 1.25
CPSF1-208ENST00000532560 CEP170BQ9Y4F5 1589 aaPredicted RBP22.83■■□□□ 1.25
CPSF1-208ENST00000532560 GCC2Q8IWJ2 1684 aa22.82■■□□□ 1.24
CPSF1-208ENST00000532560 ERVK-7P63135 1459 aa22.82■■□□□ 1.24
CPSF1-208ENST00000532560 FBXO31Q5XUX0 539 aaPredicted RBP22.81■■□□□ 1.24
CPSF1-208ENST00000532560 EFCAB6Q5THR3 1501 aa22.81■■□□□ 1.24
CPSF1-208ENST00000532560 A2ML1A8K2U0 1454 aa22.79■■□□□ 1.24
CPSF1-208ENST00000532560 NAIPQ13075 1403 aa22.79■■□□□ 1.24
CPSF1-208ENST00000532560 HFM1A2PYH4 1435 aa22.78■■□□□ 1.24
CPSF1-208ENST00000532560 NLRP1Q9C000 1473 aa22.78■■□□□ 1.24
CPSF1-208ENST00000532560 IQGAP3Q86VI3 1631 aa22.77■■□□□ 1.24
CPSF1-208ENST00000532560 TET3O43151 1660 aa22.77■■□□□ 1.24
CPSF1-208ENST00000532560 RPRD2Q5VT52 1461 aaKnown RBP22.73■■□□□ 1.23
CPSF1-208ENST00000532560 STRCQ7RTU9 1775 aa22.73■■□□□ 1.23
CPSF1-208ENST00000532560 PLA2R1Q13018 1463 aa22.73■■□□□ 1.23
CPSF1-208ENST00000532560 CFAP65Q6ZU64 1925 aaKnown RBP22.7■■□□□ 1.22
CPSF1-208ENST00000532560 NOS1P29475 1434 aa22.69■■□□□ 1.22
CPSF1-208ENST00000532560 NUP155O75694 1391 aa22.69■■□□□ 1.22
CPSF1-208ENST00000532560 UGGT1Q9NYU2 1555 aa22.68■■□□□ 1.22
CPSF1-208ENST00000532560 SYNMO15061 1565 aa22.67■■□□□ 1.22
CPSF1-208ENST00000532560 E9PCH4 1651 aa22.66■■□□□ 1.22
CPSF1-208ENST00000532560 UBR1Q8IWV7 1749 aa22.62■■□□□ 1.21
CPSF1-208ENST00000532560 PTPRTO14522 1441 aa22.62■■□□□ 1.21
CPSF1-208ENST00000532560 DMRT2Q9Y5R5 561 aa22.61■■□□□ 1.21
CPSF1-208ENST00000532560 KDM5AP29375 1690 aaKnown RBP22.61■■□□□ 1.21
CPSF1-208ENST00000532560 PIK3C2BO00750 1634 aa22.6■■□□□ 1.21
CPSF1-208ENST00000532560 PKD2Q13563 968 aa22.6■■□□□ 1.21
CPSF1-208ENST00000532560 THEMISQ8N1K5 641 aaPredicted RBP22.6■■□□□ 1.21
CPSF1-208ENST00000532560 POLR1AO95602 1720 aaPredicted RBP22.59■■□□□ 1.21
CPSF1-208ENST00000532560 SLC52A1Q9NWF4 448 aa22.57■■□□□ 1.2
CPSF1-208ENST00000532560 ADGRB3O60242 1522 aa22.56■■□□□ 1.2
CPSF1-208ENST00000532560 NCKAP5LQ9HCH0 1330 aa22.56■■□□□ 1.2
CPSF1-208ENST00000532560 NEURL4Q96JN8 1562 aa22.55■■□□□ 1.2
CPSF1-208ENST00000532560 ARHGAP23Q9P227 1491 aa22.54■■□□□ 1.2
CPSF1-208ENST00000532560 SLIT1O75093 1534 aa22.54■■□□□ 1.2
CPSF1-208ENST00000532560 IDI1Q13907 227 aa22.54■■□□□ 1.2
CPSF1-208ENST00000532560 SETD5Q9C0A6 1442 aa22.54■■□□□ 1.2
CPSF1-208ENST00000532560 SPHKAPQ2M3C7 1700 aa22.53■■□□□ 1.2
CPSF1-208ENST00000532560 ANKLE2Q86XL3 938 aa22.51■■□□□ 1.19
CPSF1-208ENST00000532560 TRIM52Q96A61 297 aa22.51■■□□□ 1.19
CPSF1-208ENST00000532560 MED14O60244 1454 aa22.51■■□□□ 1.19
CPSF1-208ENST00000532560 ACIN1Q9UKV3 1341 aaKnown RBP22.5■■□□□ 1.19
CPSF1-208ENST00000532560 SCAF11Q99590 1463 aaKnown RBP22.48■■□□□ 1.19
CPSF1-208ENST00000532560 STAG3Q9UJ98 1225 aa22.48■■□□□ 1.19
CPSF1-208ENST00000532560 TMEM2Q9UHN6 1383 aa22.48■■□□□ 1.19
CPSF1-208ENST00000532560 TRPM2O94759 1503 aa22.47■■□□□ 1.19
CPSF1-208ENST00000532560 TMEM131LA2VDJ0 1609 aa22.47■■□□□ 1.19
CPSF1-208ENST00000532560 RAB3GAP2Q9H2M9 1393 aa22.46■■□□□ 1.19
CPSF1-208ENST00000532560 NPHP4O75161 1426 aaPredicted RBP22.46■■□□□ 1.19
CPSF1-208ENST00000532560 IQGAP1P46940 1657 aa22.46■■□□□ 1.19
CPSF1-208ENST00000532560 SLC4A1APQ9BWU0 796 aaKnown RBP22.45■■□□□ 1.18
CPSF1-208ENST00000532560 MYO5BQ9ULV0 1848 aa22.43■■□□□ 1.18
CPSF1-208ENST00000532560 EID1Q9Y6B2 187 aa22.41■■□□□ 1.18
CPSF1-208ENST00000532560 CLTCL1P53675 1640 aa22.41■■□□□ 1.18
CPSF1-208ENST00000532560 ZFYVE9O95405 1425 aa22.4■■□□□ 1.18
CPSF1-208ENST00000532560 LTBP4Q8N2S1 1624 aa22.4■■□□□ 1.18
CPSF1-208ENST00000532560 LTKP29376 864 aa22.4■■□□□ 1.18
CPSF1-208ENST00000532560 TXNDC2Q86VQ3 553 aa22.39■■□□□ 1.17
CPSF1-208ENST00000532560 RIMS2Q9UQ26 1411 aa22.37■■□□□ 1.17
CPSF1-208ENST00000532560 HRCP23327 699 aa22.36■■□□□ 1.17
CPSF1-208ENST00000532560 MPHOSPH9Q99550 1183 aa22.36■■□□□ 1.17
CPSF1-208ENST00000532560 ZNF335Q9H4Z2 1342 aaPredicted RBP22.34■■□□□ 1.17
CPSF1-208ENST00000532560 CHGAP10645 457 aaKnown RBP22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms