RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 ANKRD50Q9ULJ7 1429 aa21.98■■□□□ 1.11
CPSF1-206ENST00000531480 MROH2AA6NES4 1674 aa21.98■■□□□ 1.11
CPSF1-206ENST00000531480 PRDM15P57071 1507 aaPredicted RBP21.98■■□□□ 1.11
CPSF1-206ENST00000531480 KIF3BO15066 747 aa21.98■■□□□ 1.11
CPSF1-206ENST00000531480 GCC2Q8IWJ2 1684 aa21.98■■□□□ 1.11
CPSF1-206ENST00000531480 KDM5DQ9BY66 1539 aa21.97■■□□□ 1.11
CPSF1-206ENST00000531480 MLECQ14165 292 aa21.97■■□□□ 1.11
CPSF1-206ENST00000531480 CNTLNQ9NXG0 1405 aa21.97■■□□□ 1.11
CPSF1-206ENST00000531480 ITGAEP38570 1179 aa21.96■■□□□ 1.11
CPSF1-206ENST00000531480 HFM1A2PYH4 1435 aa21.95■■□□□ 1.1
CPSF1-206ENST00000531480 VWDEQ8N2E2 1590 aa21.95■■□□□ 1.1
CPSF1-206ENST00000531480 ZC3H13Q5T200 1668 aaKnown RBP21.95■■□□□ 1.1
CPSF1-206ENST00000531480 NAIPQ13075 1403 aa21.94■■□□□ 1.1
CPSF1-206ENST00000531480 CLTCQ00610 1675 aaKnown RBP21.93■■□□□ 1.1
CPSF1-206ENST00000531480 UNC13BO14795 1591 aa21.92■■□□□ 1.1
CPSF1-206ENST00000531480 GGT6Q6P531 493 aa21.92■■□□□ 1.1
CPSF1-206ENST00000531480 PLPPR3Q6T4P5 718 aa21.92■■□□□ 1.1
CPSF1-206ENST00000531480 C3P01024 1663 aa21.91■■□□□ 1.1
CPSF1-206ENST00000531480 ABCC3O15438 1527 aa21.9■■□□□ 1.1
CPSF1-206ENST00000531480 LMTK2Q8IWU2 1503 aa21.88■■□□□ 1.09
CPSF1-206ENST00000531480 CEP152O94986 1710 aa21.86■■□□□ 1.09
CPSF1-206ENST00000531480 ZMYM3Q14202 1370 aa21.86■■□□□ 1.09
CPSF1-206ENST00000531480 CAMSAP1Q5T5Y3 1602 aa21.84■■□□□ 1.09
CPSF1-206ENST00000531480 WASHC2CQ9Y4E1 1318 aa21.83■■□□□ 1.09
CPSF1-206ENST00000531480 ESF1Q9H501 851 aaKnown RBP21.83■■□□□ 1.09
CPSF1-206ENST00000531480 IQGAP3Q86VI3 1631 aa21.82■■□□□ 1.08
CPSF1-206ENST00000531480 SETD1BQ9UPS6 1966 aaKnown RBP21.81■■□□□ 1.08
CPSF1-206ENST00000531480 ARHGAP31Q2M1Z3 1444 aa21.81■■□□□ 1.08
CPSF1-206ENST00000531480 PZPP20742 1482 aa21.81■■□□□ 1.08
CPSF1-206ENST00000531480 NPATQ14207 1427 aa21.8■■□□□ 1.08
CPSF1-206ENST00000531480 KANK1Q14678 1352 aa21.8■■□□□ 1.08
CPSF1-206ENST00000531480 LMTK3Q96Q04 1460 aa21.79■■□□□ 1.08
CPSF1-206ENST00000531480 TET3O43151 1660 aa21.79■■□□□ 1.08
CPSF1-206ENST00000531480 EFCAB6Q5THR3 1501 aa21.78■■□□□ 1.08
CPSF1-206ENST00000531480 CEBPAP49715 358 aaPredicted RBP21.77■■□□□ 1.08
CPSF1-206ENST00000531480 SETD5Q9C0A6 1442 aa21.75■■□□□ 1.07
CPSF1-206ENST00000531480 SPATA31D1Q6ZQQ2 1576 aa21.74■■□□□ 1.07
CPSF1-206ENST00000531480 ILDR1Q86SU0 546 aaPredicted RBP21.74■■□□□ 1.07
CPSF1-206ENST00000531480 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.74■■□□□ 1.07
CPSF1-206ENST00000531480 PREX1Q8TCU6 1659 aa21.73■■□□□ 1.07
CPSF1-206ENST00000531480 RPRD2Q5VT52 1461 aaKnown RBP21.73■■□□□ 1.07
CPSF1-206ENST00000531480 NUP155O75694 1391 aa21.72■■□□□ 1.07
CPSF1-206ENST00000531480 ACIN1Q9UKV3 1341 aaKnown RBP21.71■■□□□ 1.07
CPSF1-206ENST00000531480 E9PCH4 1651 aa21.7■■□□□ 1.06
CPSF1-206ENST00000531480 ERVK-7P63135 1459 aa21.7■■□□□ 1.06
CPSF1-206ENST00000531480 HRCP23327 699 aa21.69■■□□□ 1.06
CPSF1-206ENST00000531480 HSPA2P54652 639 aa21.69■■□□□ 1.06
CPSF1-206ENST00000531480 MYO3AQ8NEV4 1616 aa21.68■■□□□ 1.06
CPSF1-206ENST00000531480 ZNF142P52746 1687 aaPredicted RBP21.68■■□□□ 1.06
CPSF1-206ENST00000531480 RAB3GAP2Q9H2M9 1393 aa21.67■■□□□ 1.06
CPSF1-206ENST00000531480 TRIM26Q12899 539 aaPredicted RBP21.67■■□□□ 1.06
CPSF1-206ENST00000531480 CFAP65Q6ZU64 1925 aaKnown RBP21.67■■□□□ 1.06
CPSF1-206ENST00000531480 NOS1P29475 1434 aa21.66■■□□□ 1.06
CPSF1-206ENST00000531480 FBXO31Q5XUX0 539 aaPredicted RBP21.66■■□□□ 1.06
CPSF1-206ENST00000531480 TNRQ92752 1358 aa21.64■■□□□ 1.06
CPSF1-206ENST00000531480 UHRF1BP1Q6BDS2 1440 aa21.63■■□□□ 1.05
CPSF1-206ENST00000531480 NLRP1Q9C000 1473 aa21.63■■□□□ 1.05
CPSF1-206ENST00000531480 SYNMO15061 1565 aa21.62■■□□□ 1.05
CPSF1-206ENST00000531480 CEP170BQ9Y4F5 1589 aaPredicted RBP21.61■■□□□ 1.05
CPSF1-206ENST00000531480 A2ML1A8K2U0 1454 aa21.59■■□□□ 1.05
CPSF1-206ENST00000531480 PTPRTO14522 1441 aa21.59■■□□□ 1.05
CPSF1-206ENST00000531480 PIK3C2BO00750 1634 aa21.58■■□□□ 1.05
CPSF1-206ENST00000531480 KDM5AP29375 1690 aaKnown RBP21.58■■□□□ 1.05
CPSF1-206ENST00000531480 SPHKAPQ2M3C7 1700 aa21.58■■□□□ 1.04
CPSF1-206ENST00000531480 TRIM52Q96A61 297 aa21.57■■□□□ 1.04
CPSF1-206ENST00000531480 UBR1Q8IWV7 1749 aa21.53■■□□□ 1.04
CPSF1-206ENST00000531480 SLC4A1APQ9BWU0 796 aaKnown RBP21.53■■□□□ 1.04
CPSF1-206ENST00000531480 TRPM2O94759 1503 aa21.53■■□□□ 1.04
CPSF1-206ENST00000531480 PLA2R1Q13018 1463 aa21.52■■□□□ 1.04
CPSF1-206ENST00000531480 MPHOSPH9Q99550 1183 aa21.52■■□□□ 1.04
CPSF1-206ENST00000531480 SLC52A1Q9NWF4 448 aa21.52■■□□□ 1.04
CPSF1-206ENST00000531480 PKD2Q13563 968 aa21.51■■□□□ 1.03
CPSF1-206ENST00000531480 UGGT1Q9NYU2 1555 aa21.51■■□□□ 1.03
CPSF1-206ENST00000531480 IDI1Q13907 227 aa21.48■■□□□ 1.03
CPSF1-206ENST00000531480 STRCQ7RTU9 1775 aa21.48■■□□□ 1.03
CPSF1-206ENST00000531480 ADGRB3O60242 1522 aa21.47■■□□□ 1.03
CPSF1-206ENST00000531480 TMEM131LA2VDJ0 1609 aa21.46■■□□□ 1.03
CPSF1-206ENST00000531480 CLTCL1P53675 1640 aa21.45■■□□□ 1.02
CPSF1-206ENST00000531480 ARHGAP23Q9P227 1491 aa21.44■■□□□ 1.02
CPSF1-206ENST00000531480 SLIT1O75093 1534 aa21.44■■□□□ 1.02
CPSF1-206ENST00000531480 MYO5BQ9ULV0 1848 aa21.43■■□□□ 1.02
CPSF1-206ENST00000531480 THEMISQ8N1K5 641 aaPredicted RBP21.42■■□□□ 1.02
CPSF1-206ENST00000531480 FBXO41Q8TF61 875 aa21.4■■□□□ 1.02
CPSF1-206ENST00000531480 POLR1AO95602 1720 aaPredicted RBP21.4■■□□□ 1.02
CPSF1-206ENST00000531480 KIF1BO60333 1816 aa21.39■■□□□ 1.02
CPSF1-206ENST00000531480 FOXD1Q16676 465 aa21.39■■□□□ 1.01
CPSF1-206ENST00000531480 NEURL4Q96JN8 1562 aa21.38■■□□□ 1.01
CPSF1-206ENST00000531480 ANKRD30BQ9BXX2 1392 aa21.37■■□□□ 1.01
CPSF1-206ENST00000531480 TMEM2Q9UHN6 1383 aa21.37■■□□□ 1.01
CPSF1-206ENST00000531480 MED14O60244 1454 aa21.36■■□□□ 1.01
CPSF1-206ENST00000531480 ZFYVE9O95405 1425 aa21.35■■□□□ 1.01
CPSF1-206ENST00000531480 CCDC144AA2RUR9 1427 aa21.34■■□□□ 1.01
CPSF1-206ENST00000531480 SPATA31E1Q6ZUB1 1445 aa21.31■■□□□ 1
CPSF1-206ENST00000531480 PCGF6Q9BYE7 350 aa21.31■■□□□ 1
CPSF1-206ENST00000531480 STAG3Q9UJ98 1225 aa21.31■■□□□ 1
CPSF1-206ENST00000531480 DHX57Q6P158 1386 aaKnown RBP21.31■■□□□ 1
CPSF1-206ENST00000531480 SCAF11Q99590 1463 aaKnown RBP21.31■■□□□ 1
CPSF1-206ENST00000531480 ANKLE2Q86XL3 938 aa21.3■■□□□ 1
CPSF1-206ENST00000531480 CERKQ8TCT0 537 aa21.29■■□□□ 1
CPSF1-206ENST00000531480 NCKAP5LQ9HCH0 1330 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms