RNA–Protein interactions for RNA: ENST00000530700.1

USH1C-209, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 403 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-209ENST00000530700 KANK1Q14678 1352 aa20.18■□□□□ 0.82
USH1C-209ENST00000530700 RAB3GAP2Q9H2M9 1393 aa20.18■□□□□ 0.82
USH1C-209ENST00000530700 AGLP35573 1532 aa20.17■□□□□ 0.82
USH1C-209ENST00000530700 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.17■□□□□ 0.82
USH1C-209ENST00000530700 ABCA6Q8N139 1617 aa20.16■□□□□ 0.82
USH1C-209ENST00000530700 WASHC2CQ9Y4E1 1318 aa20.14■□□□□ 0.81
USH1C-209ENST00000530700 NUP155O75694 1391 aa20.13■□□□□ 0.81
USH1C-209ENST00000530700 MLECQ14165 292 aa20.13■□□□□ 0.81
USH1C-209ENST00000530700 SLC4A1APQ9BWU0 796 aaKnown RBP20.09■□□□□ 0.81
USH1C-209ENST00000530700 EIF2AK4Q9P2K8 1649 aaKnown RBP20.08■□□□□ 0.8
USH1C-209ENST00000530700 MPHOSPH9Q99550 1183 aa20.07■□□□□ 0.8
USH1C-209ENST00000530700 GCC2Q8IWJ2 1684 aa20.06■□□□□ 0.8
USH1C-209ENST00000530700 CNTLNQ9NXG0 1405 aa20.02■□□□□ 0.8
USH1C-209ENST00000530700 BCORL1Q5H9F3 1711 aa20.02■□□□□ 0.79
USH1C-209ENST00000530700 PKD2Q13563 968 aa20■□□□□ 0.79
USH1C-209ENST00000530700 FAM135AQ9P2D6 1515 aa20■□□□□ 0.79
USH1C-209ENST00000530700 RNF17Q9BXT8 1623 aaKnown RBP19.98■□□□□ 0.79
USH1C-209ENST00000530700 KDM5DQ9BY66 1539 aa19.97■□□□□ 0.79
USH1C-209ENST00000530700 PRDM15P57071 1507 aaPredicted RBP19.97■□□□□ 0.79
USH1C-209ENST00000530700 ZMYM3Q14202 1370 aa19.96■□□□□ 0.79
USH1C-209ENST00000530700 LMTK2Q8IWU2 1503 aa19.96■□□□□ 0.79
USH1C-209ENST00000530700 UNC13BO14795 1591 aa19.95■□□□□ 0.78
USH1C-209ENST00000530700 DEPDC5O75140 1603 aa19.94■□□□□ 0.78
USH1C-209ENST00000530700 ARHGAP31Q2M1Z3 1444 aa19.94■□□□□ 0.78
USH1C-209ENST00000530700 VWDEQ8N2E2 1590 aa19.93■□□□□ 0.78
USH1C-209ENST00000530700 PZPP20742 1482 aa19.92■□□□□ 0.78
USH1C-209ENST00000530700 ABCC3O15438 1527 aa19.92■□□□□ 0.78
USH1C-209ENST00000530700 CCER1Q8TC90 406 aaPredicted RBP19.91■□□□□ 0.78
USH1C-209ENST00000530700 MROH1Q8NDA8 1641 aa19.91■□□□□ 0.78
USH1C-209ENST00000530700 DHX57Q6P158 1386 aaKnown RBP19.9■□□□□ 0.78
USH1C-209ENST00000530700 KDM4FA0A1W2PPD8 638 aa19.89■□□□□ 0.77
USH1C-209ENST00000530700 RPRD2Q5VT52 1461 aaKnown RBP19.89■□□□□ 0.77
USH1C-209ENST00000530700 IQGAP3Q86VI3 1631 aa19.89■□□□□ 0.77
USH1C-209ENST00000530700 SIGLEC1Q9BZZ2 1709 aa19.89■□□□□ 0.77
USH1C-209ENST00000530700 CLSPNQ9HAW4 1339 aa19.89■□□□□ 0.77
USH1C-209ENST00000530700 SLC52A1Q9NWF4 448 aa19.87■□□□□ 0.77
USH1C-209ENST00000530700 CEBPAP49715 358 aaPredicted RBP19.86■□□□□ 0.77
USH1C-209ENST00000530700 FOXD1Q16676 465 aa19.86■□□□□ 0.77
USH1C-209ENST00000530700 NPATQ14207 1427 aa19.85■□□□□ 0.77
USH1C-209ENST00000530700 ZC3H13Q5T200 1668 aaKnown RBP19.85■□□□□ 0.77
USH1C-209ENST00000530700 FBXO31Q5XUX0 539 aaPredicted RBP19.85■□□□□ 0.77
USH1C-209ENST00000530700 ADAMTSL3P82987 1691 aa19.83■□□□□ 0.76
USH1C-209ENST00000530700 TET3O43151 1660 aa19.82■□□□□ 0.76
USH1C-209ENST00000530700 PLPPR3Q6T4P5 718 aa19.82■□□□□ 0.76
USH1C-209ENST00000530700 ANKRD30BQ9BXX2 1392 aa19.82■□□□□ 0.76
USH1C-209ENST00000530700 EFCAB6Q5THR3 1501 aa19.81■□□□□ 0.76
USH1C-209ENST00000530700 PTPRTO14522 1441 aa19.81■□□□□ 0.76
USH1C-209ENST00000530700 NOS1P29475 1434 aa19.79■□□□□ 0.76
USH1C-209ENST00000530700 PTPRMP28827 1452 aa19.79■□□□□ 0.76
USH1C-209ENST00000530700 CLTCQ00610 1675 aaKnown RBP19.78■□□□□ 0.76
USH1C-209ENST00000530700 TNRQ92752 1358 aa19.78■□□□□ 0.76
USH1C-209ENST00000530700 MADDQ8WXG6 1647 aa19.77■□□□□ 0.76
USH1C-209ENST00000530700 STAG3Q9UJ98 1225 aa19.77■□□□□ 0.76
USH1C-209ENST00000530700 MROH2AA6NES4 1674 aa19.77■□□□□ 0.76
USH1C-209ENST00000530700 CCDC144AA2RUR9 1427 aa19.76■□□□□ 0.75
USH1C-209ENST00000530700 CAMSAP1Q5T5Y3 1602 aa19.76■□□□□ 0.75
USH1C-209ENST00000530700 IDI1Q13907 227 aa19.76■□□□□ 0.75
USH1C-209ENST00000530700 FER1L4A9Z1Z3 1794 aa19.75■□□□□ 0.75
USH1C-209ENST00000530700 ERVK-7P63135 1459 aa19.75■□□□□ 0.75
USH1C-209ENST00000530700 CEP152O94986 1710 aa19.74■□□□□ 0.75
USH1C-209ENST00000530700 NEUROD1Q13562 356 aa19.73■□□□□ 0.75
USH1C-209ENST00000530700 TIMELESSQ9UNS1 1208 aa19.73■□□□□ 0.75
USH1C-209ENST00000530700 PLA2R1Q13018 1463 aa19.73■□□□□ 0.75
USH1C-209ENST00000530700 HDGFP51858 240 aaKnown RBP19.72■□□□□ 0.75
USH1C-209ENST00000530700 CHGAP10645 457 aaKnown RBP19.71■□□□□ 0.75
USH1C-209ENST00000530700 SIN3AQ96ST3 1273 aa19.71■□□□□ 0.75
USH1C-209ENST00000530700 E9PCH4 1651 aa19.71■□□□□ 0.75
USH1C-209ENST00000530700 RIMS1Q86UR5 1692 aaKnown RBP19.71■□□□□ 0.75
USH1C-209ENST00000530700 SPATA31D1Q6ZQQ2 1576 aa19.7■□□□□ 0.74
USH1C-209ENST00000530700 THEMISQ8N1K5 641 aaPredicted RBP19.7■□□□□ 0.74
USH1C-209ENST00000530700 NLRP1Q9C000 1473 aa19.69■□□□□ 0.74
USH1C-209ENST00000530700 STAC3Q96MF2 364 aa19.69■□□□□ 0.74
USH1C-209ENST00000530700 TRPM2O94759 1503 aa19.68■□□□□ 0.74
USH1C-209ENST00000530700 RPGRIP1LQ68CZ1 1315 aa19.67■□□□□ 0.74
USH1C-209ENST00000530700 ZNF326Q5BKZ1 582 aaKnown RBP19.66■□□□□ 0.74
USH1C-209ENST00000530700 C3P01024 1663 aa19.65■□□□□ 0.74
USH1C-209ENST00000530700 RGL3Q3MIN7 710 aa19.65■□□□□ 0.74
USH1C-209ENST00000530700 UHRF1BP1Q6BDS2 1440 aa19.64■□□□□ 0.73
USH1C-209ENST00000530700 SETD1BQ9UPS6 1966 aaKnown RBP19.63■□□□□ 0.73
USH1C-209ENST00000530700 PREX1Q8TCU6 1659 aa19.63■□□□□ 0.73
USH1C-209ENST00000530700 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.63■□□□□ 0.73
USH1C-209ENST00000530700 TONSLQ96HA7 1378 aa19.61■□□□□ 0.73
USH1C-209ENST00000530700 ZEB1P37275 1124 aaPredicted RBP19.61■□□□□ 0.73
USH1C-209ENST00000530700 A2ML1A8K2U0 1454 aa19.6■□□□□ 0.73
USH1C-209ENST00000530700 SPHKAPQ2M3C7 1700 aa19.6■□□□□ 0.73
USH1C-209ENST00000530700 VGFO15240 615 aaPredicted RBP19.6■□□□□ 0.73
USH1C-209ENST00000530700 EID1Q9Y6B2 187 aa19.6■□□□□ 0.73
USH1C-209ENST00000530700 SYNMO15061 1565 aa19.6■□□□□ 0.73
USH1C-209ENST00000530700 CFAP65Q6ZU64 1925 aaKnown RBP19.59■□□□□ 0.73
USH1C-209ENST00000530700 DCAF11Q8TEB1 546 aa19.58■□□□□ 0.72
USH1C-209ENST00000530700 L3MBTL2Q969R5 705 aa19.57■□□□□ 0.72
USH1C-209ENST00000530700 SPATA31E1Q6ZUB1 1445 aa19.57■□□□□ 0.72
USH1C-209ENST00000530700 ANKLE2Q86XL3 938 aa19.56■□□□□ 0.72
USH1C-209ENST00000530700 NEURL4Q96JN8 1562 aa19.55■□□□□ 0.72
USH1C-209ENST00000530700 UGGT1Q9NYU2 1555 aa19.55■□□□□ 0.72
USH1C-209ENST00000530700 PIK3C2BO00750 1634 aa19.54■□□□□ 0.72
USH1C-209ENST00000530700 PPP1R15AO75807 674 aaPredicted RBP19.54■□□□□ 0.72
USH1C-209ENST00000530700 TXNDC2Q86VQ3 553 aa19.54■□□□□ 0.72
USH1C-209ENST00000530700 TMEM2Q9UHN6 1383 aa19.54■□□□□ 0.72
USH1C-209ENST00000530700 CLTCL1P53675 1640 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms