RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 HFM1A2PYH4 1435 aa32.26■■■□□ 2.76
CAPN1-220ENST00000530567 DEPDC5O75140 1603 aa32.25■■■□□ 2.75
CAPN1-220ENST00000530567 GGT6Q6P531 493 aa32.24■■■□□ 2.75
CAPN1-220ENST00000530567 RIMS1Q86UR5 1692 aaKnown RBP32.23■■■□□ 2.75
CAPN1-220ENST00000530567 PRDM15P57071 1507 aaPredicted RBP32.21■■■□□ 2.75
CAPN1-220ENST00000530567 FAM135AQ9P2D6 1515 aa32.17■■■□□ 2.74
CAPN1-220ENST00000530567 PPP6R1Q9UPN7 881 aa32.16■■■□□ 2.74
CAPN1-220ENST00000530567 CLTCQ00610 1675 aaKnown RBP32.15■■■□□ 2.74
CAPN1-220ENST00000530567 UNC13BO14795 1591 aa32.15■■■□□ 2.74
CAPN1-220ENST00000530567 KDM5DQ9BY66 1539 aa32.15■■■□□ 2.74
CAPN1-220ENST00000530567 PTPRMP28827 1452 aa32.14■■■□□ 2.74
CAPN1-220ENST00000530567 CNTLNQ9NXG0 1405 aa32.14■■■□□ 2.74
CAPN1-220ENST00000530567 VWDEQ8N2E2 1590 aa32.13■■■□□ 2.73
CAPN1-220ENST00000530567 ABCC3O15438 1527 aa32.13■■■□□ 2.73
CAPN1-220ENST00000530567 MROH2AA6NES4 1674 aa32.12■■■□□ 2.73
CAPN1-220ENST00000530567 ZC3H13Q5T200 1668 aaKnown RBP32.11■■■□□ 2.73
CAPN1-220ENST00000530567 CEP152O94986 1710 aa32.09■■■□□ 2.73
CAPN1-220ENST00000530567 C3P01024 1663 aa32.06■■■□□ 2.72
CAPN1-220ENST00000530567 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.06■■■□□ 2.725e-6■■□□□ 13.2
CAPN1-220ENST00000530567 ESF1Q9H501 851 aaKnown RBP32.06■■■□□ 2.72
CAPN1-220ENST00000530567 WASHC2CQ9Y4E1 1318 aa32.05■■■□□ 2.72
CAPN1-220ENST00000530567 LMTK2Q8IWU2 1503 aa32.03■■■□□ 2.72
CAPN1-220ENST00000530567 TRIM26Q12899 539 aaPredicted RBP32.03■■■□□ 2.72
CAPN1-220ENST00000530567 SETD5Q9C0A6 1442 aa32.03■■■□□ 2.72
CAPN1-220ENST00000530567 ZMYM3Q14202 1370 aa32.03■■■□□ 2.72
CAPN1-220ENST00000530567 KANK1Q14678 1352 aa32.02■■■□□ 2.72
CAPN1-220ENST00000530567 CAMSAP1Q5T5Y3 1602 aa32.01■■■□□ 2.72
CAPN1-220ENST00000530567 IQGAP3Q86VI3 1631 aa32.01■■■□□ 2.72
CAPN1-220ENST00000530567 CEBPAP49715 358 aaPredicted RBP32■■■□□ 2.71
CAPN1-220ENST00000530567 NUP155O75694 1391 aa31.96■■■□□ 2.71
CAPN1-220ENST00000530567 RAB3GAP2Q9H2M9 1393 aa31.95■■■□□ 2.71
CAPN1-220ENST00000530567 PZPP20742 1482 aa31.95■■■□□ 2.71
CAPN1-220ENST00000530567 EFCAB6Q5THR3 1501 aa31.94■■■□□ 2.7
CAPN1-220ENST00000530567 TET3O43151 1660 aa31.94■■■□□ 2.7
CAPN1-220ENST00000530567 ARHGAP31Q2M1Z3 1444 aa31.93■■■□□ 2.7
CAPN1-220ENST00000530567 PLPPR3Q6T4P5 718 aa31.92■■■□□ 2.7
CAPN1-220ENST00000530567 NPATQ14207 1427 aa31.91■■■□□ 2.7
CAPN1-220ENST00000530567 FBXO31Q5XUX0 539 aaPredicted RBP31.84■■■□□ 2.69
CAPN1-220ENST00000530567 E9PCH4 1651 aa31.84■■■□□ 2.69
CAPN1-220ENST00000530567 TRIM52Q96A61 297 aa31.83■■■□□ 2.69
CAPN1-220ENST00000530567 ERVK-7P63135 1459 aa31.83■■■□□ 2.69
CAPN1-220ENST00000530567 SPATA31D1Q6ZQQ2 1576 aa31.83■■■□□ 2.69
CAPN1-220ENST00000530567 PREX1Q8TCU6 1659 aa31.83■■■□□ 2.69
CAPN1-220ENST00000530567 RPRD2Q5VT52 1461 aaKnown RBP31.82■■■□□ 2.68
CAPN1-220ENST00000530567 AEBP2Q6ZN18 517 aaPredicted RBP31.81■■■□□ 2.68
CAPN1-220ENST00000530567 HRCP23327 699 aa31.8■■■□□ 2.68
CAPN1-220ENST00000530567 CFAP65Q6ZU64 1925 aaKnown RBP31.79■■■□□ 2.68
CAPN1-220ENST00000530567 SETD1BQ9UPS6 1966 aaKnown RBP31.79■■■□□ 2.68
CAPN1-220ENST00000530567 ACIN1Q9UKV3 1341 aaKnown RBP31.77■■■□□ 2.68
CAPN1-220ENST00000530567 TNRQ92752 1358 aa31.76■■■□□ 2.67
CAPN1-220ENST00000530567 NOS1P29475 1434 aa31.75■■■□□ 2.67
CAPN1-220ENST00000530567 MYO3AQ8NEV4 1616 aa31.75■■■□□ 2.67
CAPN1-220ENST00000530567 SYNMO15061 1565 aa31.72■■■□□ 2.67
CAPN1-220ENST00000530567 SLC4A1APQ9BWU0 796 aaKnown RBP31.72■■■□□ 2.67
CAPN1-220ENST00000530567 LMTK3Q96Q04 1460 aa31.7■■■□□ 2.67
CAPN1-220ENST00000530567 UHRF1BP1Q6BDS2 1440 aa31.69■■■□□ 2.66
CAPN1-220ENST00000530567 MPHOSPH9Q99550 1183 aa31.68■■■□□ 2.66
CAPN1-220ENST00000530567 PKD2Q13563 968 aa31.67■■■□□ 2.66
CAPN1-220ENST00000530567 ZNF142P52746 1687 aaPredicted RBP31.67■■■□□ 2.66
CAPN1-220ENST00000530567 PTPRTO14522 1441 aa31.65■■■□□ 2.66
CAPN1-220ENST00000530567 SPHKAPQ2M3C7 1700 aa31.65■■■□□ 2.66
CAPN1-220ENST00000530567 NLRP1Q9C000 1473 aa31.65■■■□□ 2.66
CAPN1-220ENST00000530567 CEP170BQ9Y4F5 1589 aaPredicted RBP31.65■■■□□ 2.66
CAPN1-220ENST00000530567 PCGF6Q9BYE7 350 aa31.64■■■□□ 2.66
CAPN1-220ENST00000530567 A2ML1A8K2U0 1454 aa31.62■■■□□ 2.65
CAPN1-220ENST00000530567 PLA2R1Q13018 1463 aa31.62■■■□□ 2.65
CAPN1-220ENST00000530567 PIK3C2BO00750 1634 aa31.61■■■□□ 2.65
CAPN1-220ENST00000530567 UGGT1Q9NYU2 1555 aa31.6■■■□□ 2.65
CAPN1-220ENST00000530567 FOXD1Q16676 465 aa31.59■■■□□ 2.65
CAPN1-220ENST00000530567 TRPM2O94759 1503 aa31.59■■■□□ 2.65
CAPN1-220ENST00000530567 IDI1Q13907 227 aa31.54■■■□□ 2.64
CAPN1-220ENST00000530567 SLC52A1Q9NWF4 448 aa31.53■■■□□ 2.64
CAPN1-220ENST00000530567 UBR1Q8IWV7 1749 aa31.53■■■□□ 2.64
CAPN1-220ENST00000530567 CLTCL1P53675 1640 aa31.51■■■□□ 2.64
CAPN1-220ENST00000530567 HSPA2P54652 639 aa31.5■■■□□ 2.63
CAPN1-220ENST00000530567 KDM5AP29375 1690 aaKnown RBP31.49■■■□□ 2.63
CAPN1-220ENST00000530567 ADGRB3O60242 1522 aa31.49■■■□□ 2.63
CAPN1-220ENST00000530567 TMEM131LA2VDJ0 1609 aa31.45■■■□□ 2.63
CAPN1-220ENST00000530567 ANKRD30BQ9BXX2 1392 aa31.43■■■□□ 2.62
CAPN1-220ENST00000530567 DHX57Q6P158 1386 aaKnown RBP31.42■■■□□ 2.62
CAPN1-220ENST00000530567 MYO5BQ9ULV0 1848 aa31.42■■■□□ 2.62
CAPN1-220ENST00000530567 THEMISQ8N1K5 641 aaPredicted RBP31.39■■■□□ 2.62
CAPN1-220ENST00000530567 CCDC144AA2RUR9 1427 aa31.38■■■□□ 2.61
CAPN1-220ENST00000530567 ARHGAP23Q9P227 1491 aa31.37■■■□□ 2.61
CAPN1-220ENST00000530567 SLIT1O75093 1534 aa31.37■■■□□ 2.61
CAPN1-220ENST00000530567 STRCQ7RTU9 1775 aa31.36■■■□□ 2.61
CAPN1-220ENST00000530567 KIF1BO60333 1816 aa31.35■■■□□ 2.61
CAPN1-220ENST00000530567 STAG3Q9UJ98 1225 aa31.34■■■□□ 2.61
CAPN1-220ENST00000530567 TMEM2Q9UHN6 1383 aa31.33■■■□□ 2.61
CAPN1-220ENST00000530567 CHGAP10645 457 aaKnown RBP31.31■■■□□ 2.6
CAPN1-220ENST00000530567 POLR1AO95602 1720 aaPredicted RBP31.29■■■□□ 2.6
CAPN1-220ENST00000530567 ZFYVE9O95405 1425 aa31.29■■■□□ 2.6
CAPN1-220ENST00000530567 SPATA31E1Q6ZUB1 1445 aa31.29■■■□□ 2.6
CAPN1-220ENST00000530567 NEURL4Q96JN8 1562 aa31.28■■■□□ 2.6
CAPN1-220ENST00000530567 NCKAP5LQ9HCH0 1330 aa31.25■■■□□ 2.59
CAPN1-220ENST00000530567 SCAF11Q99590 1463 aaKnown RBP31.25■■■□□ 2.59
CAPN1-220ENST00000530567 RIMS2Q9UQ26 1411 aa31.25■■■□□ 2.59
CAPN1-220ENST00000530567 LTKP29376 864 aa31.24■■■□□ 2.59
CAPN1-220ENST00000530567 NEXMIFQ5QGS0 1516 aa31.22■■■□□ 2.59
CAPN1-220ENST00000530567 ANKLE2Q86XL3 938 aa31.22■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms