RNA–Protein interactions for RNA: ENST00000526280.1

SMPD1-202, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 1,344 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-202ENST00000526280 RIMS1Q86UR5 1692 aaKnown RBP19.56■□□□□ 0.72
SMPD1-202ENST00000526280 PTPRMP28827 1452 aa19.56■□□□□ 0.72
SMPD1-202ENST00000526280 RNF17Q9BXT8 1623 aaKnown RBP19.55■□□□□ 0.72
SMPD1-202ENST00000526280 CNTLNQ9NXG0 1405 aa19.54■□□□□ 0.72
SMPD1-202ENST00000526280 MROH1Q8NDA8 1641 aa19.5■□□□□ 0.71
SMPD1-202ENST00000526280 WASHC2CQ9Y4E1 1318 aa19.5■□□□□ 0.71
SMPD1-202ENST00000526280 FAM135AQ9P2D6 1515 aa19.49■□□□□ 0.71
SMPD1-202ENST00000526280 NAIPQ13075 1403 aa19.49■□□□□ 0.71
SMPD1-202ENST00000526280 ZMYM3Q14202 1370 aa19.49■□□□□ 0.71
SMPD1-202ENST00000526280 DEPDC5O75140 1603 aa19.49■□□□□ 0.71
SMPD1-202ENST00000526280 HFM1A2PYH4 1435 aa19.48■□□□□ 0.71
SMPD1-202ENST00000526280 CLTCQ00610 1675 aaKnown RBP19.48■□□□□ 0.71
SMPD1-202ENST00000526280 PRDM15P57071 1507 aaPredicted RBP19.48■□□□□ 0.71
SMPD1-202ENST00000526280 KDM5DQ9BY66 1539 aa19.48■□□□□ 0.71
SMPD1-202ENST00000526280 CEBPAP49715 358 aaPredicted RBP19.48■□□□□ 0.71
SMPD1-202ENST00000526280 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.48■□□□□ 0.71
SMPD1-202ENST00000526280 MROH2AA6NES4 1674 aa19.47■□□□□ 0.71
SMPD1-202ENST00000526280 PLPPR3Q6T4P5 718 aa19.46■□□□□ 0.71
SMPD1-202ENST00000526280 KANK1Q14678 1352 aa19.45■□□□□ 0.7
SMPD1-202ENST00000526280 ABCC3O15438 1527 aa19.45■□□□□ 0.7
SMPD1-202ENST00000526280 C3P01024 1663 aa19.44■□□□□ 0.7
SMPD1-202ENST00000526280 GCC2Q8IWJ2 1684 aa19.44■□□□□ 0.7
SMPD1-202ENST00000526280 VWDEQ8N2E2 1590 aa19.43■□□□□ 0.7
SMPD1-202ENST00000526280 ZC3H13Q5T200 1668 aaKnown RBP19.43■□□□□ 0.7
SMPD1-202ENST00000526280 UNC13BO14795 1591 aa19.41■□□□□ 0.7
SMPD1-202ENST00000526280 CEP152O94986 1710 aa19.4■□□□□ 0.7
SMPD1-202ENST00000526280 LMTK2Q8IWU2 1503 aa19.39■□□□□ 0.69
SMPD1-202ENST00000526280 NUP155O75694 1391 aa19.38■□□□□ 0.69
SMPD1-202ENST00000526280 SETD1BQ9UPS6 1966 aaKnown RBP19.38■□□□□ 0.69
SMPD1-202ENST00000526280 PZPP20742 1482 aa19.37■□□□□ 0.69
SMPD1-202ENST00000526280 NPATQ14207 1427 aa19.37■□□□□ 0.69
SMPD1-202ENST00000526280 ARHGAP31Q2M1Z3 1444 aa19.36■□□□□ 0.69
SMPD1-202ENST00000526280 SETD5Q9C0A6 1442 aa19.36■□□□□ 0.69
SMPD1-202ENST00000526280 FBXO31Q5XUX0 539 aaPredicted RBP19.36■□□□□ 0.69
SMPD1-202ENST00000526280 CAMSAP1Q5T5Y3 1602 aa19.36■□□□□ 0.69
SMPD1-202ENST00000526280 IQGAP3Q86VI3 1631 aa19.34■□□□□ 0.69
SMPD1-202ENST00000526280 TRIM26Q12899 539 aaPredicted RBP19.32■□□□□ 0.68
SMPD1-202ENST00000526280 TRIM52Q96A61 297 aa19.31■□□□□ 0.68
SMPD1-202ENST00000526280 EFCAB6Q5THR3 1501 aa19.31■□□□□ 0.68
SMPD1-202ENST00000526280 TET3O43151 1660 aa19.31■□□□□ 0.68
SMPD1-202ENST00000526280 CFAP65Q6ZU64 1925 aaKnown RBP19.3■□□□□ 0.68
SMPD1-202ENST00000526280 ACIN1Q9UKV3 1341 aaKnown RBP19.3■□□□□ 0.68
SMPD1-202ENST00000526280 TNRQ92752 1358 aa19.29■□□□□ 0.68
SMPD1-202ENST00000526280 RAB3GAP2Q9H2M9 1393 aa19.29■□□□□ 0.68
SMPD1-202ENST00000526280 ERVK-7P63135 1459 aa19.29■□□□□ 0.68
SMPD1-202ENST00000526280 SPATA31D1Q6ZQQ2 1576 aa19.28■□□□□ 0.68
SMPD1-202ENST00000526280 PREX1Q8TCU6 1659 aa19.28■□□□□ 0.68
SMPD1-202ENST00000526280 RPRD2Q5VT52 1461 aaKnown RBP19.27■□□□□ 0.68
SMPD1-202ENST00000526280 LMTK3Q96Q04 1460 aa19.27■□□□□ 0.68
SMPD1-202ENST00000526280 UHRF1BP1Q6BDS2 1440 aa19.27■□□□□ 0.68
SMPD1-202ENST00000526280 HRCP23327 699 aa19.26■□□□□ 0.67
SMPD1-202ENST00000526280 NOS1P29475 1434 aa19.24■□□□□ 0.67
SMPD1-202ENST00000526280 E9PCH4 1651 aa19.24■□□□□ 0.67
SMPD1-202ENST00000526280 SLC4A1APQ9BWU0 796 aaKnown RBP19.24■□□□□ 0.67
SMPD1-202ENST00000526280 MYO3AQ8NEV4 1616 aa19.23■□□□□ 0.67
SMPD1-202ENST00000526280 HSPA2P54652 639 aa19.23■□□□□ 0.67
SMPD1-202ENST00000526280 NLRP1Q9C000 1473 aa19.21■□□□□ 0.67
SMPD1-202ENST00000526280 PKD2Q13563 968 aa19.21■□□□□ 0.67
SMPD1-202ENST00000526280 MPHOSPH9Q99550 1183 aa19.21■□□□□ 0.67
SMPD1-202ENST00000526280 A2ML1A8K2U0 1454 aa19.2■□□□□ 0.66
SMPD1-202ENST00000526280 CEP170BQ9Y4F5 1589 aaPredicted RBP19.19■□□□□ 0.66
SMPD1-202ENST00000526280 SYNMO15061 1565 aa19.19■□□□□ 0.66
SMPD1-202ENST00000526280 ZNF142P52746 1687 aaPredicted RBP19.18■□□□□ 0.66
SMPD1-202ENST00000526280 IDI1Q13907 227 aa19.18■□□□□ 0.66
SMPD1-202ENST00000526280 SLC52A1Q9NWF4 448 aa19.18■□□□□ 0.66
SMPD1-202ENST00000526280 PTPRTO14522 1441 aa19.17■□□□□ 0.66
SMPD1-202ENST00000526280 THEMISQ8N1K5 641 aaPredicted RBP19.14■□□□□ 0.65
SMPD1-202ENST00000526280 UGGT1Q9NYU2 1555 aa19.13■□□□□ 0.65
SMPD1-202ENST00000526280 FOXD1Q16676 465 aa19.13■□□□□ 0.65
SMPD1-202ENST00000526280 PLA2R1Q13018 1463 aa19.12■□□□□ 0.65
SMPD1-202ENST00000526280 SPHKAPQ2M3C7 1700 aa19.12■□□□□ 0.65
SMPD1-202ENST00000526280 PIK3C2BO00750 1634 aa19.11■□□□□ 0.65
SMPD1-202ENST00000526280 UBR1Q8IWV7 1749 aa19.1■□□□□ 0.65
SMPD1-202ENST00000526280 STAG3Q9UJ98 1225 aa19.09■□□□□ 0.65
SMPD1-202ENST00000526280 TRPM2O94759 1503 aa19.09■□□□□ 0.65
SMPD1-202ENST00000526280 KDM5AP29375 1690 aaKnown RBP19.07■□□□□ 0.64
SMPD1-202ENST00000526280 PCGF6Q9BYE7 350 aa19.06■□□□□ 0.64
SMPD1-202ENST00000526280 STRCQ7RTU9 1775 aa19.06■□□□□ 0.64
SMPD1-202ENST00000526280 ADGRB3O60242 1522 aa19.05■□□□□ 0.64
SMPD1-202ENST00000526280 TMEM131LA2VDJ0 1609 aa19.04■□□□□ 0.64
SMPD1-202ENST00000526280 NCKAP5LQ9HCH0 1330 aa19.04■□□□□ 0.64
SMPD1-202ENST00000526280 CLTCL1P53675 1640 aa19.03■□□□□ 0.64
SMPD1-202ENST00000526280 CHGAP10645 457 aaKnown RBP19.03■□□□□ 0.64
SMPD1-202ENST00000526280 ANKLE2Q86XL3 938 aa19.03■□□□□ 0.64
SMPD1-202ENST00000526280 TMEM2Q9UHN6 1383 aa19.03■□□□□ 0.64
SMPD1-202ENST00000526280 SLIT1O75093 1534 aa19.03■□□□□ 0.64
SMPD1-202ENST00000526280 ARHGAP23Q9P227 1491 aa19.02■□□□□ 0.64
SMPD1-202ENST00000526280 ANKRD30BQ9BXX2 1392 aa19.01■□□□□ 0.63
SMPD1-202ENST00000526280 MYO5BQ9ULV0 1848 aa19.01■□□□□ 0.63
SMPD1-202ENST00000526280 DMRT2Q9Y5R5 561 aa19■□□□□ 0.63
SMPD1-202ENST00000526280 CCDC144AA2RUR9 1427 aa19■□□□□ 0.63
SMPD1-202ENST00000526280 LTKP29376 864 aa19■□□□□ 0.63
SMPD1-202ENST00000526280 TXNDC2Q86VQ3 553 aa19■□□□□ 0.63
SMPD1-202ENST00000526280 EID1Q9Y6B2 187 aa18.99■□□□□ 0.63
SMPD1-202ENST00000526280 KIF1BO60333 1816 aa18.97■□□□□ 0.63
SMPD1-202ENST00000526280 SCAF11Q99590 1463 aaKnown RBP18.96■□□□□ 0.63
SMPD1-202ENST00000526280 POLR1AO95602 1720 aaPredicted RBP18.96■□□□□ 0.63
SMPD1-202ENST00000526280 ZFYVE9O95405 1425 aa18.96■□□□□ 0.63
SMPD1-202ENST00000526280 RIMS2Q9UQ26 1411 aa18.96■□□□□ 0.63
SMPD1-202ENST00000526280 HDGFP51858 240 aaKnown RBP18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms