RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.43□□□□□ -0.74
CD44-221ENST00000526000 SPATA31D1Q6ZQQ2 1576 aa10.43□□□□□ -0.74
CD44-221ENST00000526000 CEP170BQ9Y4F5 1589 aaPredicted RBP10.43□□□□□ -0.74
CD44-221ENST00000526000 A2ML1A8K2U0 1454 aa10.42□□□□□ -0.74
CD44-221ENST00000526000 TCOF1Q13428 1488 aaKnown RBP10.42□□□□□ -0.74
CD44-221ENST00000526000 RTEL1-TNFRSF6BF6WH68 1400 aa10.42□□□□□ -0.74
CD44-221ENST00000526000 TIAM1Q13009 1591 aa10.42□□□□□ -0.74
CD44-221ENST00000526000 INO80Q9ULG1 1556 aaPredicted RBP10.42□□□□□ -0.74
CD44-221ENST00000526000 PLA2R1Q13018 1463 aa10.42□□□□□ -0.74
CD44-221ENST00000526000 NCOA2Q15596 1464 aa10.42□□□□□ -0.74
CD44-221ENST00000526000 MIA2Q96PC5 1412 aa10.41□□□□□ -0.74
CD44-221ENST00000526000 PLXNC1O60486 1568 aa10.41□□□□□ -0.74
CD44-221ENST00000526000 IQSEC2Q5JU85 1478 aa10.41□□□□□ -0.74
CD44-221ENST00000526000 MROH2AA6NES4 1674 aa10.41□□□□□ -0.74
CD44-221ENST00000526000 PHF23Q9BUL5 403 aaPredicted RBP10.4□□□□□ -0.74
CD44-221ENST00000526000 RRP7BPQ9NSQ0 103 aa10.4□□□□□ -0.74
CD44-221ENST00000526000 MYO3AQ8NEV4 1616 aa10.4□□□□□ -0.75
CD44-221ENST00000526000 CAMSAP2Q08AD1 1489 aa10.39□□□□□ -0.75
CD44-221ENST00000526000 CCDC141Q6ZP82 1450 aa10.39□□□□□ -0.75
CD44-221ENST00000526000 SHANK2Q9UPX8 1470 aa10.39□□□□□ -0.75
CD44-221ENST00000526000 TXNDC2Q86VQ3 553 aa10.39□□□□□ -0.75
CD44-221ENST00000526000 DNMT1P26358 1616 aaKnown RBP10.39□□□□□ -0.75
CD44-221ENST00000526000 EHBP1L1Q8N3D4 1523 aa10.38□□□□□ -0.75
CD44-221ENST00000526000 CHIC2Q9UKJ5 165 aa10.38□□□□□ -0.75
CD44-221ENST00000526000 NPHP4O75161 1426 aaPredicted RBP10.38□□□□□ -0.75
CD44-221ENST00000526000 LTKP29376 864 aa10.37□□□□□ -0.75
CD44-221ENST00000526000 RBM33Q96EV2 1170 aaKnown RBP10.37□□□□□ -0.75
CD44-221ENST00000526000 STAG3Q9UJ98 1225 aa10.37□□□□□ -0.75
CD44-221ENST00000526000 PZPP20742 1482 aa10.36□□□□□ -0.75
CD44-221ENST00000526000 ADGBQ8N7X0 1667 aa10.36□□□□□ -0.75
CD44-221ENST00000526000 FAM135AQ9P2D6 1515 aa10.35□□□□□ -0.75
CD44-221ENST00000526000 APLP2Q06481 763 aa10.34□□□□□ -0.75
CD44-221ENST00000526000 BCANQ96GW7 911 aa10.34□□□□□ -0.75
CD44-221ENST00000526000 UGGT1Q9NYU2 1555 aa10.34□□□□□ -0.75
CD44-221ENST00000526000 KDM5DQ9BY66 1539 aa10.33□□□□□ -0.76
CD44-221ENST00000526000 EID1Q9Y6B2 187 aa10.33□□□□□ -0.76
CD44-221ENST00000526000 NEURL4Q96JN8 1562 aa10.33□□□□□ -0.76
CD44-221ENST00000526000 ZNF142P52746 1687 aaPredicted RBP10.33□□□□□ -0.76
CD44-221ENST00000526000 LRRC9Q6ZRR7 1453 aa10.32□□□□□ -0.76
CD44-221ENST00000526000 SLC26A8Q96RN1 970 aa10.32□□□□□ -0.76
CD44-221ENST00000526000 CPS1P31327 1500 aa10.32□□□□□ -0.76
CD44-221ENST00000526000 CFAP65Q6ZU64 1925 aaKnown RBP10.31□□□□□ -0.76
CD44-221ENST00000526000 NLRP1Q9C000 1473 aa10.31□□□□□ -0.76
CD44-221ENST00000526000 IDI1Q13907 227 aa10.31□□□□□ -0.76
CD44-221ENST00000526000 PROSER2Q86WR7 435 aaPredicted RBP10.3□□□□□ -0.76
CD44-221ENST00000526000 VPS8Q8N3P4 1428 aa10.3□□□□□ -0.76
CD44-221ENST00000526000 VWDEQ8N2E2 1590 aa10.3□□□□□ -0.76
CD44-221ENST00000526000 ERVK-7P63135 1459 aa10.3□□□□□ -0.76
CD44-221ENST00000526000 ABCC3O15438 1527 aa10.29□□□□□ -0.76
CD44-221ENST00000526000 LRRC7Q96NW7 1537 aa10.29□□□□□ -0.76
CD44-221ENST00000526000 KIF15Q9NS87 1388 aa10.28□□□□□ -0.76
CD44-221ENST00000526000 MED1Q15648 1581 aaPredicted RBP10.28□□□□□ -0.76
CD44-221ENST00000526000 FAM50AQ14320 339 aaKnown RBP10.28□□□□□ -0.76
CD44-221ENST00000526000 RGS17Q9UGC6 210 aaPredicted RBP10.28□□□□□ -0.76
CD44-221ENST00000526000 MED14O60244 1454 aa10.28□□□□□ -0.76
CD44-221ENST00000526000 ARHGEF5Q12774 1597 aa10.27□□□□□ -0.76
CD44-221ENST00000526000 MYOM3Q5VTT5 1437 aa10.27□□□□□ -0.77
CD44-221ENST00000526000 ABCC5O15440 1437 aa10.26□□□□□ -0.77
CD44-221ENST00000526000 CHGAP10645 457 aaKnown RBP10.26□□□□□ -0.77
CD44-221ENST00000526000 NUTM2DQ5VT03 806 aaPredicted RBP10.26□□□□□ -0.77
CD44-221ENST00000526000 SCAF11Q99590 1463 aaKnown RBP10.25□□□□□ -0.77
CD44-221ENST00000526000 KCNA6P17658 529 aa10.25□□□□□ -0.77
CD44-221ENST00000526000 POTEAQ6S8J7 498 aa10.25□□□□□ -0.77
CD44-221ENST00000526000 ALKQ9UM73 1620 aa10.25□□□□□ -0.77
CD44-221ENST00000526000 KANK1Q14678 1352 aa10.25□□□□□ -0.77
CD44-221ENST00000526000 POLR1AO95602 1720 aaPredicted RBP10.24□□□□□ -0.77
CD44-221ENST00000526000 TMEM94Q12767 1356 aa10.24□□□□□ -0.77
CD44-221ENST00000526000 TMEM2Q9UHN6 1383 aa10.24□□□□□ -0.77
CD44-221ENST00000526000 STRCP1A6NGW2 1772 aa10.23□□□□□ -0.77
CD44-221ENST00000526000 DUOX2Q9NRD8 1548 aa10.23□□□□□ -0.77
CD44-221ENST00000526000 IQGAP1P46940 1657 aa10.22□□□□□ -0.77
CD44-221ENST00000526000 PPP1R15AO75807 674 aaPredicted RBP10.22□□□□□ -0.77
CD44-221ENST00000526000 PPARGC1BQ86YN6 1023 aaKnown RBP10.22□□□□□ -0.77
CD44-221ENST00000526000 DEPDC5O75140 1603 aa10.22□□□□□ -0.77
CD44-221ENST00000526000 C14orf37Q86TY3 774 aa10.21□□□□□ -0.77
CD44-221ENST00000526000 ANKRD30AQ9BXX3 1397 aa10.21□□□□□ -0.78
CD44-221ENST00000526000 MAST1Q9Y2H9 1570 aa10.21□□□□□ -0.78
CD44-221ENST00000526000 MROH1Q8NDA8 1641 aa10.21□□□□□ -0.78
CD44-221ENST00000526000 CEP152O94986 1710 aa10.21□□□□□ -0.78
CD44-221ENST00000526000 ITGAEP38570 1179 aa10.2□□□□□ -0.78
CD44-221ENST00000526000 DAPK1P53355 1430 aa10.2□□□□□ -0.78
CD44-221ENST00000526000 RNF17Q9BXT8 1623 aaKnown RBP10.2□□□□□ -0.78
CD44-221ENST00000526000 SLAIN2Q9P270 581 aa10.2□□□□□ -0.78
CD44-221ENST00000526000 ARHGAP23Q9P227 1491 aa10.19□□□□□ -0.78
CD44-221ENST00000526000 ARHGAP31Q2M1Z3 1444 aa10.19□□□□□ -0.78
CD44-221ENST00000526000 SLC52A1Q9NWF4 448 aa10.18□□□□□ -0.78
CD44-221ENST00000526000 SLIT1O75093 1534 aa10.17□□□□□ -0.78
CD44-221ENST00000526000 FAM135BQ49AJ0 1406 aa10.17□□□□□ -0.78
CD44-221ENST00000526000 FGD6Q6ZV73 1430 aa10.17□□□□□ -0.78
CD44-221ENST00000526000 ERBINQ96RT1 1412 aa10.17□□□□□ -0.78
CD44-221ENST00000526000 UBR1Q8IWV7 1749 aa10.17□□□□□ -0.78
CD44-221ENST00000526000 MAP3K1Q13233 1512 aa10.17□□□□□ -0.78
CD44-221ENST00000526000 PTPN23Q9H3S7 1636 aa10.16□□□□□ -0.78
CD44-221ENST00000526000 HDGFP51858 240 aaKnown RBP10.16□□□□□ -0.78
CD44-221ENST00000526000 PIK3C2BO00750 1634 aa10.15□□□□□ -0.78
CD44-221ENST00000526000 EIF2AK4Q9P2K8 1649 aaKnown RBP10.15□□□□□ -0.78
CD44-221ENST00000526000 ZC3H13Q5T200 1668 aaKnown RBP10.15□□□□□ -0.79
CD44-221ENST00000526000 MSH6P52701 1360 aa10.14□□□□□ -0.79
CD44-221ENST00000526000 EFCAB6Q5THR3 1501 aa10.14□□□□□ -0.79
CD44-221ENST00000526000 NUTM2BA6NNL0 878 aaPredicted RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms