RNA–Protein interactions for RNA: ENST00000520561.1

CSMD1-208, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 4

Gene CSMD1, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-208ENST00000520561 DEPDC5O75140 1603 aa13.21□□□□□ -0.29
CSMD1-208ENST00000520561 ATP10AO60312 1499 aa13.21□□□□□ -0.3
CSMD1-208ENST00000520561 RNF17Q9BXT8 1623 aaKnown RBP13.21□□□□□ -0.3
CSMD1-208ENST00000520561 PRDM15P57071 1507 aaPredicted RBP13.19□□□□□ -0.3
CSMD1-208ENST00000520561 IQGAP3Q86VI3 1631 aa13.19□□□□□ -0.3
CSMD1-208ENST00000520561 NUP155O75694 1391 aa13.19□□□□□ -0.3
CSMD1-208ENST00000520561 FAM135AQ9P2D6 1515 aa13.18□□□□□ -0.3
CSMD1-208ENST00000520561 PZPP20742 1482 aa13.17□□□□□ -0.3
CSMD1-208ENST00000520561 KIF3BO15066 747 aa13.17□□□□□ -0.3
CSMD1-208ENST00000520561 AGLP35573 1532 aa13.17□□□□□ -0.3
CSMD1-208ENST00000520561 KANK1Q14678 1352 aa13.17□□□□□ -0.3
CSMD1-208ENST00000520561 MROH1Q8NDA8 1641 aa13.17□□□□□ -0.3
CSMD1-208ENST00000520561 CLSPNQ9HAW4 1339 aa13.15□□□□□ -0.3
CSMD1-208ENST00000520561 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.15□□□□□ -0.3
CSMD1-208ENST00000520561 MPHOSPH9Q99550 1183 aa13.14□□□□□ -0.31
CSMD1-208ENST00000520561 SLC4A1APQ9BWU0 796 aaKnown RBP13.14□□□□□ -0.31
CSMD1-208ENST00000520561 VWDEQ8N2E2 1590 aa13.14□□□□□ -0.31
CSMD1-208ENST00000520561 ZC3H13Q5T200 1668 aaKnown RBP13.13□□□□□ -0.31
CSMD1-208ENST00000520561 TET3O43151 1660 aa13.12□□□□□ -0.31
CSMD1-208ENST00000520561 SIGLEC1Q9BZZ2 1709 aa13.11□□□□□ -0.31
CSMD1-208ENST00000520561 LMTK2Q8IWU2 1503 aa13.11□□□□□ -0.31
CSMD1-208ENST00000520561 CEP152O94986 1710 aa13.1□□□□□ -0.31
CSMD1-208ENST00000520561 GGT6Q6P531 493 aa13.1□□□□□ -0.31
CSMD1-208ENST00000520561 ABCC3O15438 1527 aa13.09□□□□□ -0.31
CSMD1-208ENST00000520561 EFCAB6Q5THR3 1501 aa13.09□□□□□ -0.31
CSMD1-208ENST00000520561 ZEB1P37275 1124 aaPredicted RBP13.08□□□□□ -0.32
CSMD1-208ENST00000520561 PKD2Q13563 968 aa13.08□□□□□ -0.32
CSMD1-208ENST00000520561 CAMSAP1Q5T5Y3 1602 aa13.08□□□□□ -0.32
CSMD1-208ENST00000520561 ARID4BQ4LE39 1312 aaPredicted RBP13.08□□□□□ -0.32
CSMD1-208ENST00000520561 E9PCH4 1651 aa13.06□□□□□ -0.32
CSMD1-208ENST00000520561 WASHC2CQ9Y4E1 1318 aa13.06□□□□□ -0.32
CSMD1-208ENST00000520561 PPP6R1Q9UPN7 881 aa13.05□□□□□ -0.32
CSMD1-208ENST00000520561 RPRD2Q5VT52 1461 aaKnown RBP13.04□□□□□ -0.32
CSMD1-208ENST00000520561 FOXD1Q16676 465 aa13.04□□□□□ -0.32
CSMD1-208ENST00000520561 ANKRD30BQ9BXX2 1392 aa13.04□□□□□ -0.32
CSMD1-208ENST00000520561 CLTCQ00610 1675 aaKnown RBP13.03□□□□□ -0.32
CSMD1-208ENST00000520561 SPHKAPQ2M3C7 1700 aa13.03□□□□□ -0.32
CSMD1-208ENST00000520561 MLECQ14165 292 aa13.03□□□□□ -0.32
CSMD1-208ENST00000520561 TRPM2O94759 1503 aa13.03□□□□□ -0.32
CSMD1-208ENST00000520561 ESF1Q9H501 851 aaKnown RBP13.02□□□□□ -0.33
CSMD1-208ENST00000520561 NPATQ14207 1427 aa13.01□□□□□ -0.33
CSMD1-208ENST00000520561 ARHGAP31Q2M1Z3 1444 aa13.01□□□□□ -0.33
CSMD1-208ENST00000520561 CNTLNQ9NXG0 1405 aa13.01□□□□□ -0.33
CSMD1-208ENST00000520561 MROH2AA6NES4 1674 aa13□□□□□ -0.33
CSMD1-208ENST00000520561 CCDC144AA2RUR9 1427 aa13□□□□□ -0.33
CSMD1-208ENST00000520561 FER1L4A9Z1Z3 1794 aa12.99□□□□□ -0.33
CSMD1-208ENST00000520561 NEUROD1Q13562 356 aa12.99□□□□□ -0.33
CSMD1-208ENST00000520561 PTPRTO14522 1441 aa12.98□□□□□ -0.33
CSMD1-208ENST00000520561 TONSLQ96HA7 1378 aa12.98□□□□□ -0.33
CSMD1-208ENST00000520561 SIN3AQ96ST3 1273 aa12.98□□□□□ -0.33
CSMD1-208ENST00000520561 PREX1Q8TCU6 1659 aa12.97□□□□□ -0.33
CSMD1-208ENST00000520561 PLA2R1Q13018 1463 aa12.97□□□□□ -0.33
CSMD1-208ENST00000520561 CLTCL1P53675 1640 aa12.96□□□□□ -0.33
CSMD1-208ENST00000520561 ERVK-7P63135 1459 aa12.96□□□□□ -0.34
CSMD1-208ENST00000520561 NOS1P29475 1434 aa12.95□□□□□ -0.34
CSMD1-208ENST00000520561 MADDQ8WXG6 1647 aa12.95□□□□□ -0.34
CSMD1-208ENST00000520561 TIMELESSQ9UNS1 1208 aa12.94□□□□□ -0.34
CSMD1-208ENST00000520561 SYNMO15061 1565 aa12.94□□□□□ -0.34
CSMD1-208ENST00000520561 SPATA31D1Q6ZQQ2 1576 aa12.94□□□□□ -0.34
CSMD1-208ENST00000520561 ZMYM3Q14202 1370 aa12.93□□□□□ -0.34
CSMD1-208ENST00000520561 ADAMTSL3P82987 1691 aa12.93□□□□□ -0.34
CSMD1-208ENST00000520561 RIMS1Q86UR5 1692 aaKnown RBP12.93□□□□□ -0.34
CSMD1-208ENST00000520561 UGGT1Q9NYU2 1555 aa12.92□□□□□ -0.34
CSMD1-208ENST00000520561 PIK3C2BO00750 1634 aa12.91□□□□□ -0.34
CSMD1-208ENST00000520561 KIF1BO60333 1816 aa12.91□□□□□ -0.34
CSMD1-208ENST00000520561 NEURL4Q96JN8 1562 aa12.9□□□□□ -0.34
CSMD1-208ENST00000520561 C3P01024 1663 aa12.9□□□□□ -0.34
CSMD1-208ENST00000520561 CFAP65Q6ZU64 1925 aaKnown RBP12.9□□□□□ -0.35
CSMD1-208ENST00000520561 ADGRB3O60242 1522 aa12.89□□□□□ -0.35
CSMD1-208ENST00000520561 TNRQ92752 1358 aa12.87□□□□□ -0.35
CSMD1-208ENST00000520561 SPATA31E1Q6ZUB1 1445 aa12.87□□□□□ -0.35
CSMD1-208ENST00000520561 FBXO31Q5XUX0 539 aaPredicted RBP12.86□□□□□ -0.35
CSMD1-208ENST00000520561 SLC52A1Q9NWF4 448 aa12.86□□□□□ -0.35
CSMD1-208ENST00000520561 L3MBTL2Q969R5 705 aa12.85□□□□□ -0.35
CSMD1-208ENST00000520561 CHGAP10645 457 aaKnown RBP12.84□□□□□ -0.35
CSMD1-208ENST00000520561 NLRP1Q9C000 1473 aa12.84□□□□□ -0.35
CSMD1-208ENST00000520561 RGL3Q3MIN7 710 aa12.83□□□□□ -0.36
CSMD1-208ENST00000520561 TMEM131LA2VDJ0 1609 aa12.83□□□□□ -0.36
CSMD1-208ENST00000520561 MYO3AQ8NEV4 1616 aa12.83□□□□□ -0.36
CSMD1-208ENST00000520561 PPP1R15AO75807 674 aaPredicted RBP12.82□□□□□ -0.36
CSMD1-208ENST00000520561 PLPPR3Q6T4P5 718 aa12.82□□□□□ -0.36
CSMD1-208ENST00000520561 KDM5AP29375 1690 aaKnown RBP12.82□□□□□ -0.36
CSMD1-208ENST00000520561 IFT172Q9UG01 1749 aa12.82□□□□□ -0.36
CSMD1-208ENST00000520561 PTPRMP28827 1452 aa12.81□□□□□ -0.36
CSMD1-208ENST00000520561 MYOM2P54296 1465 aa12.81□□□□□ -0.36
CSMD1-208ENST00000520561 CEBPAP49715 358 aaPredicted RBP12.81□□□□□ -0.36
CSMD1-208ENST00000520561 IDI1Q13907 227 aa12.81□□□□□ -0.36
CSMD1-208ENST00000520561 ZNF326Q5BKZ1 582 aaKnown RBP12.81□□□□□ -0.36
CSMD1-208ENST00000520561 STAG3Q9UJ98 1225 aa12.81□□□□□ -0.36
CSMD1-208ENST00000520561 UHRF1BP1Q6BDS2 1440 aa12.8□□□□□ -0.36
CSMD1-208ENST00000520561 DCAF11Q8TEB1 546 aa12.8□□□□□ -0.36
CSMD1-208ENST00000520561 PPLO60437 1756 aa12.79□□□□□ -0.36
CSMD1-208ENST00000520561 MYO5BQ9ULV0 1848 aa12.79□□□□□ -0.36
CSMD1-208ENST00000520561 STAC3Q96MF2 364 aa12.79□□□□□ -0.36
CSMD1-208ENST00000520561 PRAG1Q86YV5 1406 aa12.79□□□□□ -0.36
CSMD1-208ENST00000520561 A2ML1A8K2U0 1454 aa12.78□□□□□ -0.36
CSMD1-208ENST00000520561 NEXMIFQ5QGS0 1516 aa12.78□□□□□ -0.36
CSMD1-208ENST00000520561 KDM2AQ9Y2K7 1162 aa12.78□□□□□ -0.36
CSMD1-208ENST00000520561 UBR1Q8IWV7 1749 aa12.78□□□□□ -0.36
CSMD1-208ENST00000520561 RPGRIP1LQ68CZ1 1315 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms