RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 ANKLE2Q86XL3 938 aa18.24■□□□□ 0.51
LIMCH1-221ENST00000515785 NEURL4Q96JN8 1562 aa18.24■□□□□ 0.51
LIMCH1-221ENST00000515785 INO80Q9ULG1 1556 aaPredicted RBP18.24■□□□□ 0.51
LIMCH1-221ENST00000515785 TNRQ92752 1358 aa18.22■□□□□ 0.51
LIMCH1-221ENST00000515785 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.22■□□□□ 0.51
LIMCH1-221ENST00000515785 KIAA1107Q9UPP5 1409 aa18.21■□□□□ 0.51
LIMCH1-221ENST00000515785 ADGBQ8N7X0 1667 aa18.21■□□□□ 0.51
LIMCH1-221ENST00000515785 ZNF644Q9H582 1327 aaPredicted RBP18.21■□□□□ 0.51
LIMCH1-221ENST00000515785 ALKQ9UM73 1620 aa18.2■□□□□ 0.5
LIMCH1-221ENST00000515785 PLEKHH2Q8IVE3 1493 aa18.2■□□□□ 0.5
LIMCH1-221ENST00000515785 CCNB3Q8WWL7 1395 aa18.19■□□□□ 0.5
LIMCH1-221ENST00000515785 THEMISQ8N1K5 641 aaPredicted RBP18.19■□□□□ 0.5
LIMCH1-221ENST00000515785 VWDEQ8N2E2 1590 aa18.19■□□□□ 0.5
LIMCH1-221ENST00000515785 KIF3BO15066 747 aa18.18■□□□□ 0.5
LIMCH1-221ENST00000515785 RGS17Q9UGC6 210 aaPredicted RBP18.17■□□□□ 0.5
LIMCH1-221ENST00000515785 NPHP4O75161 1426 aaPredicted RBP18.16■□□□□ 0.5
LIMCH1-221ENST00000515785 WASHC2CQ9Y4E1 1318 aa18.15■□□□□ 0.5
LIMCH1-221ENST00000515785 DHX29Q7Z478 1369 aaKnown RBP18.14■□□□□ 0.49
LIMCH1-221ENST00000515785 FYCO1Q9BQS8 1478 aa18.14■□□□□ 0.49
LIMCH1-221ENST00000515785 STRCP1A6NGW2 1772 aa18.13■□□□□ 0.49
LIMCH1-221ENST00000515785 MIA2Q96PC5 1412 aa18.11■□□□□ 0.49
LIMCH1-221ENST00000515785 PZPP20742 1482 aa18.11■□□□□ 0.49
LIMCH1-221ENST00000515785 LRRC7Q96NW7 1537 aa18.11■□□□□ 0.49
LIMCH1-221ENST00000515785 UGGT1Q9NYU2 1555 aa18.1■□□□□ 0.49
LIMCH1-221ENST00000515785 FAM135AQ9P2D6 1515 aa18.09■□□□□ 0.49
LIMCH1-221ENST00000515785 MED14O60244 1454 aa18.09■□□□□ 0.49
LIMCH1-221ENST00000515785 MTUS2Q5JR59 1369 aa18.09■□□□□ 0.49
LIMCH1-221ENST00000515785 ADRA2BP18089 450 aa18.09■□□□□ 0.49
LIMCH1-221ENST00000515785 IQGAP1P46940 1657 aa18.09■□□□□ 0.49
LIMCH1-221ENST00000515785 DEPDC5O75140 1603 aa18.08■□□□□ 0.48
LIMCH1-221ENST00000515785 MBD5Q9P267 1494 aa18.07■□□□□ 0.48
LIMCH1-221ENST00000515785 KDM5DQ9BY66 1539 aa18.07■□□□□ 0.48
LIMCH1-221ENST00000515785 RTEL1-TNFRSF6BF6WH68 1400 aa18.06■□□□□ 0.48
LIMCH1-221ENST00000515785 POTEAQ6S8J7 498 aa18.06■□□□□ 0.48
LIMCH1-221ENST00000515785 NLRP1Q9C000 1473 aa18.06■□□□□ 0.48
LIMCH1-221ENST00000515785 RNF17Q9BXT8 1623 aaKnown RBP18.05■□□□□ 0.48
LIMCH1-221ENST00000515785 TIAM1Q13009 1591 aa18.03■□□□□ 0.48
LIMCH1-221ENST00000515785 CFAP65Q6ZU64 1925 aaKnown RBP18.02■□□□□ 0.47
LIMCH1-221ENST00000515785 SYNMO15061 1565 aa17.99■□□□□ 0.47
LIMCH1-221ENST00000515785 TXNDC2Q86VQ3 553 aa17.97■□□□□ 0.47
LIMCH1-221ENST00000515785 XIRP1Q702N8 1843 aaKnown RBP17.97■□□□□ 0.47
LIMCH1-221ENST00000515785 CCDC141Q6ZP82 1450 aa17.96■□□□□ 0.47
LIMCH1-221ENST00000515785 LTKP29376 864 aa17.96■□□□□ 0.47
LIMCH1-221ENST00000515785 ZC3H13Q5T200 1668 aaKnown RBP17.96■□□□□ 0.47
LIMCH1-221ENST00000515785 TSPY4P0CV99 314 aa17.94■□□□□ 0.46
LIMCH1-221ENST00000515785 TSPY10P0CW01 314 aa17.94■□□□□ 0.46
LIMCH1-221ENST00000515785 RSPH4AQ5TD94 716 aa17.93■□□□□ 0.46
LIMCH1-221ENST00000515785 CAMSAP2Q08AD1 1489 aa17.93■□□□□ 0.46
LIMCH1-221ENST00000515785 SETD1AO15047 1707 aaKnown RBP17.92■□□□□ 0.46
LIMCH1-221ENST00000515785 RBM33Q96EV2 1170 aaKnown RBP17.92■□□□□ 0.46
LIMCH1-221ENST00000515785 UBR1Q8IWV7 1749 aa17.92■□□□□ 0.46
LIMCH1-221ENST00000515785 ERVK-7P63135 1459 aa17.91■□□□□ 0.46
LIMCH1-221ENST00000515785 SCAF11Q99590 1463 aaKnown RBP17.91■□□□□ 0.46
LIMCH1-221ENST00000515785 ABCC3O15438 1527 aa17.91■□□□□ 0.46
LIMCH1-221ENST00000515785 EHBP1L1Q8N3D4 1523 aa17.91■□□□□ 0.46
LIMCH1-221ENST00000515785 FAM135BQ49AJ0 1406 aa17.9■□□□□ 0.46
LIMCH1-221ENST00000515785 CEP162Q5TB80 1403 aa17.89■□□□□ 0.46
LIMCH1-221ENST00000515785 EID1Q9Y6B2 187 aa17.89■□□□□ 0.45
LIMCH1-221ENST00000515785 NCOA2Q15596 1464 aa17.88■□□□□ 0.45
LIMCH1-221ENST00000515785 PROSER2Q86WR7 435 aaPredicted RBP17.87■□□□□ 0.45
LIMCH1-221ENST00000515785 CEP152O94986 1710 aa17.86■□□□□ 0.45
LIMCH1-221ENST00000515785 TMEM94Q12767 1356 aa17.86■□□□□ 0.45
LIMCH1-221ENST00000515785 ROBO1Q9Y6N7 1651 aa17.86■□□□□ 0.45
LIMCH1-221ENST00000515785 STAG3Q9UJ98 1225 aa17.84■□□□□ 0.45
LIMCH1-221ENST00000515785 SLC26A8Q96RN1 970 aa17.83■□□□□ 0.44
LIMCH1-221ENST00000515785 ARHGEF5Q12774 1597 aa17.83■□□□□ 0.44
LIMCH1-221ENST00000515785 ARHGAP23Q9P227 1491 aa17.82■□□□□ 0.44
LIMCH1-221ENST00000515785 SLIT1O75093 1534 aa17.82■□□□□ 0.44
LIMCH1-221ENST00000515785 KCNA6P17658 529 aa17.81■□□□□ 0.44
LIMCH1-221ENST00000515785 UPF1Q92900 1129 aaKnown RBP eCLIP17.8■□□□□ 0.44
LIMCH1-221ENST00000515785 TRIM52Q96A61 297 aa17.8■□□□□ 0.44
LIMCH1-221ENST00000515785 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.8■□□□□ 0.44
LIMCH1-221ENST00000515785 MROH1Q8NDA8 1641 aa17.8■□□□□ 0.44
LIMCH1-221ENST00000515785 PHLPP1O60346 1717 aa17.78■□□□□ 0.44
LIMCH1-221ENST00000515785 BCANQ96GW7 911 aa17.78■□□□□ 0.44
LIMCH1-221ENST00000515785 SLAIN2Q9P270 581 aa17.78■□□□□ 0.44
LIMCH1-221ENST00000515785 PIK3C2BO00750 1634 aa17.78■□□□□ 0.44
LIMCH1-221ENST00000515785 TMEM2Q9UHN6 1383 aa17.78■□□□□ 0.44
LIMCH1-221ENST00000515785 EIF2AK4Q9P2K8 1649 aaKnown RBP17.76■□□□□ 0.43
LIMCH1-221ENST00000515785 MEX3CQ5U5Q3 659 aaKnown RBP17.76■□□□□ 0.43
LIMCH1-221ENST00000515785 MAP3K1Q13233 1512 aa17.75■□□□□ 0.43
LIMCH1-221ENST00000515785 JCADQ9P266 1359 aa17.75■□□□□ 0.43
LIMCH1-221ENST00000515785 MAST1Q9Y2H9 1570 aa17.74■□□□□ 0.43
LIMCH1-221ENST00000515785 IDI1Q13907 227 aa17.73■□□□□ 0.43
LIMCH1-221ENST00000515785 MSH6P52701 1360 aa17.73■□□□□ 0.43
LIMCH1-221ENST00000515785 LRRC9Q6ZRR7 1453 aa17.72■□□□□ 0.43
LIMCH1-221ENST00000515785 RRP7BPQ9NSQ0 103 aa17.72■□□□□ 0.43
LIMCH1-221ENST00000515785 ZNF772Q68DY9 489 aaPredicted RBP17.7■□□□□ 0.42
LIMCH1-221ENST00000515785 PRDM15P57071 1507 aaPredicted RBP17.7■□□□□ 0.42
LIMCH1-221ENST00000515785 DUOX2Q9NRD8 1548 aa17.7■□□□□ 0.42
LIMCH1-221ENST00000515785 ARHGAP31Q2M1Z3 1444 aa17.7■□□□□ 0.42
LIMCH1-221ENST00000515785 TET3O43151 1660 aa17.7■□□□□ 0.42
LIMCH1-221ENST00000515785 EFCAB6Q5THR3 1501 aa17.69■□□□□ 0.42
LIMCH1-221ENST00000515785 LRP6O75581 1613 aa17.68■□□□□ 0.42
LIMCH1-221ENST00000515785 RXRBP28702 533 aa17.67■□□□□ 0.42
LIMCH1-221ENST00000515785 NUTM2BA6NNL0 878 aaPredicted RBP17.66■□□□□ 0.42
LIMCH1-221ENST00000515785 NUTM2EB1AL46 878 aaPredicted RBP17.66■□□□□ 0.42
LIMCH1-221ENST00000515785 C14orf37Q86TY3 774 aa17.66■□□□□ 0.42
LIMCH1-221ENST00000515785 NUTM2AQ8IVF1 878 aaPredicted RBP17.66■□□□□ 0.42
LIMCH1-221ENST00000515785 KIF15Q9NS87 1388 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms