RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 UBTFP17480 764 aaKnown RBP17.63■□□□□ 0.41
NEDD9-215ENST00000514660 POTEAQ6S8J7 498 aa17.63■□□□□ 0.41
NEDD9-215ENST00000514660 TNRQ92752 1358 aa17.63■□□□□ 0.41
NEDD9-215ENST00000514660 MED14O60244 1454 aa17.63■□□□□ 0.41
NEDD9-215ENST00000514660 NPHP4O75161 1426 aaPredicted RBP17.61■□□□□ 0.41
NEDD9-215ENST00000514660 CASKIN1Q8WXD9 1431 aa17.61■□□□□ 0.41
NEDD9-215ENST00000514660 KIAA1107Q9UPP5 1409 aa17.61■□□□□ 0.41
NEDD9-215ENST00000514660 ADGBQ8N7X0 1667 aa17.61■□□□□ 0.41
NEDD9-215ENST00000514660 DEPDC5O75140 1603 aa17.59■□□□□ 0.41
NEDD9-215ENST00000514660 CCDC18Q5T9S5 1454 aa17.59■□□□□ 0.41
NEDD9-215ENST00000514660 ANKLE2Q86XL3 938 aa17.59■□□□□ 0.41
NEDD9-215ENST00000514660 IQGAP1P46940 1657 aa17.58■□□□□ 0.41
NEDD9-215ENST00000514660 RNF17Q9BXT8 1623 aaKnown RBP17.58■□□□□ 0.41
NEDD9-215ENST00000514660 XIRP1Q702N8 1843 aaKnown RBP17.58■□□□□ 0.4
NEDD9-215ENST00000514660 SETD1AO15047 1707 aaKnown RBP17.58■□□□□ 0.4
NEDD9-215ENST00000514660 PZPP20742 1482 aa17.57■□□□□ 0.4
NEDD9-215ENST00000514660 ZNF644Q9H582 1327 aaPredicted RBP17.57■□□□□ 0.4
NEDD9-215ENST00000514660 MBD5Q9P267 1494 aa17.55■□□□□ 0.4
NEDD9-215ENST00000514660 UGGT1Q9NYU2 1555 aa17.54■□□□□ 0.4
NEDD9-215ENST00000514660 ZC3H13Q5T200 1668 aaKnown RBP17.54■□□□□ 0.4
NEDD9-215ENST00000514660 MIA2Q96PC5 1412 aa17.53■□□□□ 0.4
NEDD9-215ENST00000514660 SYNMO15061 1565 aa17.53■□□□□ 0.4
NEDD9-215ENST00000514660 CFDP1Q9UEE9 299 aaPredicted RBP17.52■□□□□ 0.4
NEDD9-215ENST00000514660 DHX29Q7Z478 1369 aaKnown RBP17.52■□□□□ 0.39
NEDD9-215ENST00000514660 PLEKHH2Q8IVE3 1493 aa17.51■□□□□ 0.39
NEDD9-215ENST00000514660 THEMISQ8N1K5 641 aaPredicted RBP17.51■□□□□ 0.39
NEDD9-215ENST00000514660 KDM5DQ9BY66 1539 aa17.51■□□□□ 0.39
NEDD9-215ENST00000514660 NLRP1Q9C000 1473 aa17.5■□□□□ 0.39
NEDD9-215ENST00000514660 KIF3BO15066 747 aa17.49■□□□□ 0.39
NEDD9-215ENST00000514660 FAM135AQ9P2D6 1515 aa17.47■□□□□ 0.39
NEDD9-215ENST00000514660 FYCO1Q9BQS8 1478 aa17.47■□□□□ 0.39
NEDD9-215ENST00000514660 CCNB3Q8WWL7 1395 aa17.46■□□□□ 0.39
NEDD9-215ENST00000514660 RTEL1-TNFRSF6BF6WH68 1400 aa17.46■□□□□ 0.39
NEDD9-215ENST00000514660 TIAM1Q13009 1591 aa17.45■□□□□ 0.38
NEDD9-215ENST00000514660 WASHC2CQ9Y4E1 1318 aa17.44■□□□□ 0.38
NEDD9-215ENST00000514660 FAM135BQ49AJ0 1406 aa17.42■□□□□ 0.38
NEDD9-215ENST00000514660 LTKP29376 864 aa17.41■□□□□ 0.38
NEDD9-215ENST00000514660 NCOA2Q15596 1464 aa17.41■□□□□ 0.38
NEDD9-215ENST00000514660 UBR1Q8IWV7 1749 aa17.41■□□□□ 0.38
NEDD9-215ENST00000514660 CFAP65Q6ZU64 1925 aaKnown RBP17.39■□□□□ 0.37
NEDD9-215ENST00000514660 ROBO1Q9Y6N7 1651 aa17.39■□□□□ 0.37
NEDD9-215ENST00000514660 ERVK-7P63135 1459 aa17.37■□□□□ 0.37
NEDD9-215ENST00000514660 SCAF11Q99590 1463 aaKnown RBP17.37■□□□□ 0.37
NEDD9-215ENST00000514660 ABCC3O15438 1527 aa17.37■□□□□ 0.37
NEDD9-215ENST00000514660 UPF1Q92900 1129 aaKnown RBP eCLIP17.36■□□□□ 0.37
NEDD9-215ENST00000514660 ARHGAP23Q9P227 1491 aa17.36■□□□□ 0.37
NEDD9-215ENST00000514660 RBM33Q96EV2 1170 aaKnown RBP17.35■□□□□ 0.37
NEDD9-215ENST00000514660 MAP3K1Q13233 1512 aa17.35■□□□□ 0.37
NEDD9-215ENST00000514660 MROH1Q8NDA8 1641 aa17.34■□□□□ 0.37
NEDD9-215ENST00000514660 CCDC141Q6ZP82 1450 aa17.33■□□□□ 0.37
NEDD9-215ENST00000514660 TMEM94Q12767 1356 aa17.33■□□□□ 0.36
NEDD9-215ENST00000514660 SLIT1O75093 1534 aa17.32■□□□□ 0.36
NEDD9-215ENST00000514660 MTUS2Q5JR59 1369 aa17.32■□□□□ 0.36
NEDD9-215ENST00000514660 TXNDC2Q86VQ3 553 aa17.31■□□□□ 0.36
NEDD9-215ENST00000514660 CEP152O94986 1710 aa17.3■□□□□ 0.36
NEDD9-215ENST00000514660 CAMSAP2Q08AD1 1489 aa17.3■□□□□ 0.36
NEDD9-215ENST00000514660 LRP6O75581 1613 aa17.29■□□□□ 0.36
NEDD9-215ENST00000514660 CEP162Q5TB80 1403 aa17.27■□□□□ 0.35
NEDD9-215ENST00000514660 PHLPP1O60346 1717 aa17.27■□□□□ 0.35
NEDD9-215ENST00000514660 EHBP1L1Q8N3D4 1523 aa17.26■□□□□ 0.35
NEDD9-215ENST00000514660 COL16A1Q07092 1604 aaPredicted RBP17.25■□□□□ 0.35
NEDD9-215ENST00000514660 TRIM52Q96A61 297 aa17.24■□□□□ 0.35
NEDD9-215ENST00000514660 PIK3C2BO00750 1634 aa17.24■□□□□ 0.35
NEDD9-215ENST00000514660 ARHGEF5Q12774 1597 aa17.23■□□□□ 0.35
NEDD9-215ENST00000514660 TET3O43151 1660 aa17.23■□□□□ 0.35
NEDD9-215ENST00000514660 KCNA6P17658 529 aa17.22■□□□□ 0.35
NEDD9-215ENST00000514660 JCADQ9P266 1359 aa17.22■□□□□ 0.35
NEDD9-215ENST00000514660 TMEM2Q9UHN6 1383 aa17.21■□□□□ 0.35
NEDD9-215ENST00000514660 PROSER2Q86WR7 435 aaPredicted RBP17.21■□□□□ 0.35
NEDD9-215ENST00000514660 PRDM15P57071 1507 aaPredicted RBP17.21■□□□□ 0.34
NEDD9-215ENST00000514660 SLC26A8Q96RN1 970 aa17.2■□□□□ 0.34
NEDD9-215ENST00000514660 EIF2AK4Q9P2K8 1649 aaKnown RBP17.19■□□□□ 0.34
NEDD9-215ENST00000514660 NWD1Q149M9 1564 aa17.19■□□□□ 0.34
NEDD9-215ENST00000514660 LRRC9Q6ZRR7 1453 aa17.18■□□□□ 0.34
NEDD9-215ENST00000514660 RSPH4AQ5TD94 716 aa17.18■□□□□ 0.34
NEDD9-215ENST00000514660 SLAIN2Q9P270 581 aa17.18■□□□□ 0.34
NEDD9-215ENST00000514660 MAST1Q9Y2H9 1570 aa17.17■□□□□ 0.34
NEDD9-215ENST00000514660 EID1Q9Y6B2 187 aa17.15■□□□□ 0.34
NEDD9-215ENST00000514660 ARHGAP31Q2M1Z3 1444 aa17.14■□□□□ 0.33
NEDD9-215ENST00000514660 NKTRP30414 1462 aaKnown RBP17.13■□□□□ 0.33
NEDD9-215ENST00000514660 TSPY4P0CV99 314 aa17.13■□□□□ 0.33
NEDD9-215ENST00000514660 TSPY10P0CW01 314 aa17.13■□□□□ 0.33
NEDD9-215ENST00000514660 SRCAPQ6ZRS2 3230 aa17.13■□□□□ 0.33
NEDD9-215ENST00000514660 IDI1Q13907 227 aa17.12■□□□□ 0.33
NEDD9-215ENST00000514660 EFCAB6Q5THR3 1501 aa17.11■□□□□ 0.33
NEDD9-215ENST00000514660 KDM5AP29375 1690 aaKnown RBP17.11■□□□□ 0.33
NEDD9-215ENST00000514660 ZNF772Q68DY9 489 aaPredicted RBP17.11■□□□□ 0.33
NEDD9-215ENST00000514660 MSH6P52701 1360 aa17.11■□□□□ 0.33
NEDD9-215ENST00000514660 SHPRHQ149N8 1683 aa17.1■□□□□ 0.33
NEDD9-215ENST00000514660 SPATA31A6Q5VVP1 1343 aa17.1■□□□□ 0.33
NEDD9-215ENST00000514660 FGD6Q6ZV73 1430 aa17.1■□□□□ 0.33
NEDD9-215ENST00000514660 CHD2O14647 1828 aaKnown RBP17.1■□□□□ 0.33
NEDD9-215ENST00000514660 RXRBP28702 533 aa17.09■□□□□ 0.33
NEDD9-215ENST00000514660 DIP2AQ14689 1571 aa17.09■□□□□ 0.33
NEDD9-215ENST00000514660 CDK12Q9NYV4 1490 aaPredicted RBP17.08■□□□□ 0.32
NEDD9-215ENST00000514660 AHDC1Q5TGY3 1603 aaPredicted RBP17.07■□□□□ 0.32
NEDD9-215ENST00000514660 MEX3CQ5U5Q3 659 aaKnown RBP17.07■□□□□ 0.32
NEDD9-215ENST00000514660 RGS12O14924 1447 aa17.06■□□□□ 0.32
NEDD9-215ENST00000514660 DUOX2Q9NRD8 1548 aa17.06■□□□□ 0.32
NEDD9-215ENST00000514660 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms