RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 A2MP01023 1474 aa23.04■■□□□ 1.28
NUP54-214ENST00000514307 MAGI2Q86UL8 1455 aa23.03■■□□□ 1.28
NUP54-214ENST00000514307 PPP1R15AO75807 674 aaPredicted RBP23■■□□□ 1.27
NUP54-214ENST00000514307 HECW2Q9P2P5 1572 aa22.98■■□□□ 1.27
NUP54-214ENST00000514307 KIDINS220Q9ULH0 1771 aa22.96■■□□□ 1.27
NUP54-214ENST00000514307 COL17A1Q9UMD9 1497 aaPredicted RBP22.96■■□□□ 1.27
NUP54-214ENST00000514307 FAM135AQ9P2D6 1515 aa22.96■■□□□ 1.27
NUP54-214ENST00000514307 UNC13BO14795 1591 aa22.95■■□□□ 1.26
NUP54-214ENST00000514307 GGT6Q6P531 493 aa22.95■■□□□ 1.26
NUP54-214ENST00000514307 PPP6R1Q9UPN7 881 aa22.93■■□□□ 1.26
NUP54-214ENST00000514307 ATP10AO60312 1499 aa22.92■■□□□ 1.26
NUP54-214ENST00000514307 EIF2AK4Q9P2K8 1649 aaKnown RBP22.91■■□□□ 1.26
NUP54-214ENST00000514307 ZMYM4Q5VZL5 1548 aa22.91■■□□□ 1.26
NUP54-214ENST00000514307 RICTORQ6R327 1708 aa22.9■■□□□ 1.26
NUP54-214ENST00000514307 RPRD2Q5VT52 1461 aaKnown RBP22.9■■□□□ 1.26
NUP54-214ENST00000514307 WASHC2CQ9Y4E1 1318 aa22.89■■□□□ 1.26
NUP54-214ENST00000514307 L3MBTL2Q969R5 705 aa22.88■■□□□ 1.25
NUP54-214ENST00000514307 YEATS2Q9ULM3 1422 aa22.88■■□□□ 1.25
NUP54-214ENST00000514307 IQGAP3Q86VI3 1631 aa22.87■■□□□ 1.25
NUP54-214ENST00000514307 ZNF316A6NFI3 1004 aaPredicted RBP22.87■■□□□ 1.25
NUP54-214ENST00000514307 DIP2CQ9Y2E4 1556 aa22.83■■□□□ 1.25
NUP54-214ENST00000514307 CCDC144AA2RUR9 1427 aa22.82■■□□□ 1.24
NUP54-214ENST00000514307 FRMPD1Q5SYB0 1578 aa22.82■■□□□ 1.24
NUP54-214ENST00000514307 ABCA6Q8N139 1617 aa22.82■■□□□ 1.24
NUP54-214ENST00000514307 DEPDC5O75140 1603 aa22.81■■□□□ 1.24
NUP54-214ENST00000514307 VWDEQ8N2E2 1590 aa22.8■■□□□ 1.24
NUP54-214ENST00000514307 PRDM15P57071 1507 aaPredicted RBP22.78■■□□□ 1.24
NUP54-214ENST00000514307 STAC3Q96MF2 364 aa22.78■■□□□ 1.24
NUP54-214ENST00000514307 LMTK2Q8IWU2 1503 aa22.77■■□□□ 1.24
NUP54-214ENST00000514307 ESF1Q9H501 851 aaKnown RBP22.76■■□□□ 1.23
NUP54-214ENST00000514307 AGLP35573 1532 aa22.76■■□□□ 1.23
NUP54-214ENST00000514307 RNF17Q9BXT8 1623 aaKnown RBP22.75■■□□□ 1.23
NUP54-214ENST00000514307 PTPRTO14522 1441 aa22.75■■□□□ 1.23
NUP54-214ENST00000514307 PLA2R1Q13018 1463 aa22.75■■□□□ 1.23
NUP54-214ENST00000514307 BCORL1Q5H9F3 1711 aa22.75■■□□□ 1.23
NUP54-214ENST00000514307 REREQ9P2R6 1566 aa22.75■■□□□ 1.23
NUP54-214ENST00000514307 ARID4BQ4LE39 1312 aaPredicted RBP22.73■■□□□ 1.23
NUP54-214ENST00000514307 TET3O43151 1660 aa22.72■■□□□ 1.23
NUP54-214ENST00000514307 DCAF11Q8TEB1 546 aa22.72■■□□□ 1.23
NUP54-214ENST00000514307 RGL3Q3MIN7 710 aa22.71■■□□□ 1.23
NUP54-214ENST00000514307 AEBP2Q6ZN18 517 aaPredicted RBP22.71■■□□□ 1.23
NUP54-214ENST00000514307 MROH1Q8NDA8 1641 aa22.71■■□□□ 1.23
NUP54-214ENST00000514307 ARHGAP31Q2M1Z3 1444 aa22.68■■□□□ 1.22
NUP54-214ENST00000514307 KDM2AQ9Y2K7 1162 aa22.68■■□□□ 1.22
NUP54-214ENST00000514307 MLECQ14165 292 aa22.66■■□□□ 1.22
NUP54-214ENST00000514307 ABCC3O15438 1527 aa22.66■■□□□ 1.22
NUP54-214ENST00000514307 SLC52A1Q9NWF4 448 aa22.65■■□□□ 1.22
NUP54-214ENST00000514307 EFCAB6Q5THR3 1501 aa22.64■■□□□ 1.21
NUP54-214ENST00000514307 ARHGEF40Q8TER5 1519 aa22.63■■□□□ 1.21
NUP54-214ENST00000514307 NBPF8Q3BBV2 869 aa22.63■■□□□ 1.21
NUP54-214ENST00000514307 CNTLNQ9NXG0 1405 aa22.63■■□□□ 1.21
NUP54-214ENST00000514307 TRPM2O94759 1503 aa22.62■■□□□ 1.21
NUP54-214ENST00000514307 E9PCH4 1651 aa22.62■■□□□ 1.21
NUP54-214ENST00000514307 KDM4FA0A1W2PPD8 638 aa22.62■■□□□ 1.21
NUP54-214ENST00000514307 NPATQ14207 1427 aa22.62■■□□□ 1.21
NUP54-214ENST00000514307 EIF4G2P78344 907 aaKnown RBP eCLIP22.61■■□□□ 1.21
NUP54-214ENST00000514307 ZNF326Q5BKZ1 582 aaKnown RBP22.61■■□□□ 1.21
NUP54-214ENST00000514307 UHRF1BP1Q6BDS2 1440 aa22.59■■□□□ 1.21
NUP54-214ENST00000514307 RPGRIP1LQ68CZ1 1315 aa22.57■■□□□ 1.2
NUP54-214ENST00000514307 CHGAP10645 457 aaKnown RBP22.57■■□□□ 1.2
NUP54-214ENST00000514307 SPATA31E1Q6ZUB1 1445 aa22.57■■□□□ 1.2
NUP54-214ENST00000514307 ZC3H13Q5T200 1668 aaKnown RBP22.56■■□□□ 1.2
NUP54-214ENST00000514307 NOS1P29475 1434 aa22.56■■□□□ 1.2
NUP54-214ENST00000514307 SIGLEC1Q9BZZ2 1709 aa22.55■■□□□ 1.2
NUP54-214ENST00000514307 DIEXFQ68CQ4 756 aaKnown RBP22.54■■□□□ 1.2
NUP54-214ENST00000514307 ZMYM3Q14202 1370 aa22.52■■□□□ 1.2
NUP54-214ENST00000514307 CEP152O94986 1710 aa22.52■■□□□ 1.2
NUP54-214ENST00000514307 SPHKAPQ2M3C7 1700 aa22.52■■□□□ 1.2
NUP54-214ENST00000514307 IDI1Q13907 227 aa22.52■■□□□ 1.2
NUP54-214ENST00000514307 FBXO31Q5XUX0 539 aaPredicted RBP22.51■■□□□ 1.19
NUP54-214ENST00000514307 NEURL4Q96JN8 1562 aa22.5■■□□□ 1.19
NUP54-214ENST00000514307 CAMSAP1Q5T5Y3 1602 aa22.5■■□□□ 1.19
NUP54-214ENST00000514307 HSPA5P11021 654 aaKnown RBP22.5■■□□□ 1.19
NUP54-214ENST00000514307 CARD11Q9BXL7 1154 aa22.5■■□□□ 1.19
NUP54-214ENST00000514307 VGFO15240 615 aaPredicted RBP22.48■■□□□ 1.19
NUP54-214ENST00000514307 STAG3Q9UJ98 1225 aa22.48■■□□□ 1.19
NUP54-214ENST00000514307 PRAG1Q86YV5 1406 aa22.46■■□□□ 1.19
NUP54-214ENST00000514307 CLTCL1P53675 1640 aa22.46■■□□□ 1.19
NUP54-214ENST00000514307 MADDQ8WXG6 1647 aa22.43■■□□□ 1.18
NUP54-214ENST00000514307 ROCK2O75116 1388 aaKnown RBP22.43■■□□□ 1.18
NUP54-214ENST00000514307 HDGFP51858 240 aaKnown RBP22.43■■□□□ 1.18
NUP54-214ENST00000514307 HIRIP3Q9BW71 556 aaPredicted RBP22.42■■□□□ 1.18
NUP54-214ENST00000514307 ERVK-7P63135 1459 aa22.41■■□□□ 1.18
NUP54-214ENST00000514307 RALGAPBQ86X10 1494 aa22.41■■□□□ 1.18
NUP54-214ENST00000514307 ADAMTSL3P82987 1691 aa22.41■■□□□ 1.18
NUP54-214ENST00000514307 RIMS1Q86UR5 1692 aaKnown RBP22.39■■□□□ 1.18
NUP54-214ENST00000514307 UGGT1Q9NYU2 1555 aa22.38■■□□□ 1.17
NUP54-214ENST00000514307 NBPF1Q3BBV0 1214 aa22.37■■□□□ 1.17
NUP54-214ENST00000514307 CLTCQ00610 1675 aaKnown RBP22.36■■□□□ 1.17
NUP54-214ENST00000514307 SLC24A1O60721 1099 aa22.36■■□□□ 1.17
NUP54-214ENST00000514307 GPRASP1Q5JY77 1395 aa22.36■■□□□ 1.17
NUP54-214ENST00000514307 USP47Q96K76 1375 aa22.36■■□□□ 1.17
NUP54-214ENST00000514307 KIF1BO60333 1816 aa22.36■■□□□ 1.17
NUP54-214ENST00000514307 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.35■■□□□ 1.17
NUP54-214ENST00000514307 TNRQ92752 1358 aa22.35■■□□□ 1.17
NUP54-214ENST00000514307 ADGRF5Q8IZF2 1346 aa22.34■■□□□ 1.17
NUP54-214ENST00000514307 FER1L4A9Z1Z3 1794 aa22.34■■□□□ 1.17
NUP54-214ENST00000514307 MYOM2P54296 1465 aa22.34■■□□□ 1.17
NUP54-214ENST00000514307 SYNMO15061 1565 aa22.33■■□□□ 1.17
NUP54-214ENST00000514307 ADGRB3O60242 1522 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms