RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 ESF1Q9H501 851 aaKnown RBP22.39■■□□□ 1.17
NUP54-213ENST00000513352 FER1L4A9Z1Z3 1794 aa22.39■■□□□ 1.17
NUP54-213ENST00000513352 SETD5Q9C0A6 1442 aa22.37■■□□□ 1.17
NUP54-213ENST00000513352 DEPDC5O75140 1603 aa22.35■■□□□ 1.17
NUP54-213ENST00000513352 MADDQ8WXG6 1647 aa22.35■■□□□ 1.17
NUP54-213ENST00000513352 ADAMTSL3P82987 1691 aa22.35■■□□□ 1.17
NUP54-213ENST00000513352 KANK1Q14678 1352 aa22.35■■□□□ 1.17
NUP54-213ENST00000513352 MROH1Q8NDA8 1641 aa22.35■■□□□ 1.17
NUP54-213ENST00000513352 RIMS1Q86UR5 1692 aaKnown RBP22.33■■□□□ 1.17
NUP54-213ENST00000513352 PRDM15P57071 1507 aaPredicted RBP22.33■■□□□ 1.17
NUP54-213ENST00000513352 UNC13BO14795 1591 aa22.33■■□□□ 1.16
NUP54-213ENST00000513352 CLTCQ00610 1675 aaKnown RBP22.33■■□□□ 1.16
NUP54-213ENST00000513352 CEP152O94986 1710 aa22.32■■□□□ 1.16
NUP54-213ENST00000513352 TRIM52Q96A61 297 aa22.32■■□□□ 1.16
NUP54-213ENST00000513352 PCGF6Q9BYE7 350 aa22.32■■□□□ 1.16
NUP54-213ENST00000513352 WASHC2CQ9Y4E1 1318 aa22.31■■□□□ 1.16
NUP54-213ENST00000513352 KDM5DQ9BY66 1539 aa22.31■■□□□ 1.16
NUP54-213ENST00000513352 RAB3GAP2Q9H2M9 1393 aa22.31■■□□□ 1.16
NUP54-213ENST00000513352 PLPPR3Q6T4P5 718 aa22.29■■□□□ 1.16
NUP54-213ENST00000513352 PPP6R1Q9UPN7 881 aa22.29■■□□□ 1.16
NUP54-213ENST00000513352 ZC3H13Q5T200 1668 aaKnown RBP22.29■■□□□ 1.16
NUP54-213ENST00000513352 NUP155O75694 1391 aa22.28■■□□□ 1.16
NUP54-213ENST00000513352 ABCC3O15438 1527 aa22.27■■□□□ 1.16
NUP54-213ENST00000513352 FAM135AQ9P2D6 1515 aa22.27■■□□□ 1.16
NUP54-213ENST00000513352 KDM4FA0A1W2PPD8 638 aa22.27■■□□□ 1.16
NUP54-213ENST00000513352 CNTLNQ9NXG0 1405 aa22.27■■□□□ 1.16
NUP54-213ENST00000513352 IQGAP3Q86VI3 1631 aa22.24■■□□□ 1.15
NUP54-213ENST00000513352 MROH2AA6NES4 1674 aa22.24■■□□□ 1.15
NUP54-213ENST00000513352 VWDEQ8N2E2 1590 aa22.24■■□□□ 1.15
NUP54-213ENST00000513352 CAMSAP1Q5T5Y3 1602 aa22.24■■□□□ 1.15
NUP54-213ENST00000513352 C3P01024 1663 aa22.2■■□□□ 1.15
NUP54-213ENST00000513352 PTPRMP28827 1452 aa22.2■■□□□ 1.14
NUP54-213ENST00000513352 TET3O43151 1660 aa22.2■■□□□ 1.14
NUP54-213ENST00000513352 ZMYM3Q14202 1370 aa22.19■■□□□ 1.14
NUP54-213ENST00000513352 LMTK2Q8IWU2 1503 aa22.19■■□□□ 1.14
NUP54-213ENST00000513352 CFAP65Q6ZU64 1925 aaKnown RBP22.19■■□□□ 1.14
NUP54-213ENST00000513352 ACIN1Q9UKV3 1341 aaKnown RBP22.18■■□□□ 1.14
NUP54-213ENST00000513352 CEBPAP49715 358 aaPredicted RBP22.18■■□□□ 1.14
NUP54-213ENST00000513352 EFCAB6Q5THR3 1501 aa22.16■■□□□ 1.14
NUP54-213ENST00000513352 SLC4A1APQ9BWU0 796 aaKnown RBP22.16■■□□□ 1.14
NUP54-213ENST00000513352 PZPP20742 1482 aa22.15■■□□□ 1.14
NUP54-213ENST00000513352 HRCP23327 699 aa22.15■■□□□ 1.14
NUP54-213ENST00000513352 E9PCH4 1651 aa22.13■■□□□ 1.13
NUP54-213ENST00000513352 NPATQ14207 1427 aa22.12■■□□□ 1.13
NUP54-213ENST00000513352 PKD2Q13563 968 aa22.1■■□□□ 1.13
NUP54-213ENST00000513352 ARHGAP31Q2M1Z3 1444 aa22.1■■□□□ 1.13
NUP54-213ENST00000513352 MPHOSPH9Q99550 1183 aa22.1■■□□□ 1.13
NUP54-213ENST00000513352 FBXO31Q5XUX0 539 aaPredicted RBP22.09■■□□□ 1.13
NUP54-213ENST00000513352 PREX1Q8TCU6 1659 aa22.09■■□□□ 1.13
NUP54-213ENST00000513352 ERVK-7P63135 1459 aa22.08■■□□□ 1.12
NUP54-213ENST00000513352 RPRD2Q5VT52 1461 aaKnown RBP22.08■■□□□ 1.12
NUP54-213ENST00000513352 TNRQ92752 1358 aa22.05■■□□□ 1.12
NUP54-213ENST00000513352 FOXD1Q16676 465 aa22.05■■□□□ 1.12
NUP54-213ENST00000513352 SPATA31D1Q6ZQQ2 1576 aa22.04■■□□□ 1.12
NUP54-213ENST00000513352 SPHKAPQ2M3C7 1700 aa22.03■■□□□ 1.12
NUP54-213ENST00000513352 SETD1BQ9UPS6 1966 aaKnown RBP22.01■■□□□ 1.11
NUP54-213ENST00000513352 SYNMO15061 1565 aa21.99■■□□□ 1.11
NUP54-213ENST00000513352 MYO3AQ8NEV4 1616 aa21.99■■□□□ 1.11
NUP54-213ENST00000513352 NOS1P29475 1434 aa21.99■■□□□ 1.11
NUP54-213ENST00000513352 UHRF1BP1Q6BDS2 1440 aa21.97■■□□□ 1.11
NUP54-213ENST00000513352 DHX57Q6P158 1386 aaKnown RBP21.95■■□□□ 1.1
NUP54-213ENST00000513352 TRPM2O94759 1503 aa21.95■■□□□ 1.1
NUP54-213ENST00000513352 UGGT1Q9NYU2 1555 aa21.95■■□□□ 1.1
NUP54-213ENST00000513352 PTPRTO14522 1441 aa21.94■■□□□ 1.1
NUP54-213ENST00000513352 NLRP1Q9C000 1473 aa21.93■■□□□ 1.1
NUP54-213ENST00000513352 STAG3Q9UJ98 1225 aa21.92■■□□□ 1.1
NUP54-213ENST00000513352 CLTCL1P53675 1640 aa21.91■■□□□ 1.1
NUP54-213ENST00000513352 CEP170BQ9Y4F5 1589 aaPredicted RBP21.91■■□□□ 1.1
NUP54-213ENST00000513352 CHGAP10645 457 aaKnown RBP21.91■■□□□ 1.1
NUP54-213ENST00000513352 ZNF142P52746 1687 aaPredicted RBP21.91■■□□□ 1.1
NUP54-213ENST00000513352 PIK3C2BO00750 1634 aa21.91■■□□□ 1.1
NUP54-213ENST00000513352 PLA2R1Q13018 1463 aa21.9■■□□□ 1.1
NUP54-213ENST00000513352 SLC52A1Q9NWF4 448 aa21.9■■□□□ 1.1
NUP54-213ENST00000513352 A2ML1A8K2U0 1454 aa21.9■■□□□ 1.1
NUP54-213ENST00000513352 CCDC144AA2RUR9 1427 aa21.89■■□□□ 1.1
NUP54-213ENST00000513352 IDI1Q13907 227 aa21.89■■□□□ 1.09
NUP54-213ENST00000513352 KIF1BO60333 1816 aa21.87■■□□□ 1.09
NUP54-213ENST00000513352 ANKRD30BQ9BXX2 1392 aa21.87■■□□□ 1.09
NUP54-213ENST00000513352 ADGRB3O60242 1522 aa21.85■■□□□ 1.09
NUP54-213ENST00000513352 MYO5BQ9ULV0 1848 aa21.85■■□□□ 1.09
NUP54-213ENST00000513352 LMTK3Q96Q04 1460 aa21.85■■□□□ 1.09
NUP54-213ENST00000513352 UBR1Q8IWV7 1749 aa21.85■■□□□ 1.09
NUP54-213ENST00000513352 CCER1Q8TC90 406 aaPredicted RBP21.83■■□□□ 1.09
NUP54-213ENST00000513352 TMEM131LA2VDJ0 1609 aa21.81■■□□□ 1.08
NUP54-213ENST00000513352 HSPA2P54652 639 aa21.81■■□□□ 1.08
NUP54-213ENST00000513352 ZNF326Q5BKZ1 582 aaKnown RBP21.8■■□□□ 1.08
NUP54-213ENST00000513352 KDM5AP29375 1690 aaKnown RBP21.79■■□□□ 1.08
NUP54-213ENST00000513352 THEMISQ8N1K5 641 aaPredicted RBP21.79■■□□□ 1.08
NUP54-213ENST00000513352 NEUROD1Q13562 356 aa21.77■■□□□ 1.08
NUP54-213ENST00000513352 RGL3Q3MIN7 710 aa21.76■■□□□ 1.07
NUP54-213ENST00000513352 SIN3AQ96ST3 1273 aa21.75■■□□□ 1.07
NUP54-213ENST00000513352 TMEM2Q9UHN6 1383 aa21.72■■□□□ 1.07
NUP54-213ENST00000513352 RIMS2Q9UQ26 1411 aa21.72■■□□□ 1.07
NUP54-213ENST00000513352 POLR1AO95602 1720 aaPredicted RBP21.7■■□□□ 1.06
NUP54-213ENST00000513352 PPP1R15AO75807 674 aaPredicted RBP21.7■■□□□ 1.06
NUP54-213ENST00000513352 NUTM2DQ5VT03 806 aaPredicted RBP21.7■■□□□ 1.06
NUP54-213ENST00000513352 EID1Q9Y6B2 187 aa21.7■■□□□ 1.06
NUP54-213ENST00000513352 SPATA31E1Q6ZUB1 1445 aa21.7■■□□□ 1.06
NUP54-213ENST00000513352 SLIT1O75093 1534 aa21.7■■□□□ 1.06
NUP54-213ENST00000513352 ANKLE2Q86XL3 938 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms