RNA–Protein interactions for RNA: ENST00000513139.1

SPCS3-204, Transcript of signal peptidase complex subunit 3, humanhuman

TSL 2

Gene SPCS3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3-204ENST00000513139 FAM135AQ9P2D6 1515 aa22.65■■□□□ 1.22
SPCS3-204ENST00000513139 TOM1O60784 492 aa22.64■■□□□ 1.21
SPCS3-204ENST00000513139 MBD5Q9P267 1494 aa22.64■■□□□ 1.21
SPCS3-204ENST00000513139 MTUS2Q5JR59 1369 aa22.63■■□□□ 1.21
SPCS3-204ENST00000513139 SHANK2Q9UPX8 1470 aa22.63■■□□□ 1.21
SPCS3-204ENST00000513139 TIAM1Q13009 1591 aa22.63■■□□□ 1.21
SPCS3-204ENST00000513139 DHX29Q7Z478 1369 aaKnown RBP22.63■■□□□ 1.21
SPCS3-204ENST00000513139 HSPA1LP34931 641 aa22.62■■□□□ 1.21
SPCS3-204ENST00000513139 TNRQ92752 1358 aa22.6■■□□□ 1.21
SPCS3-204ENST00000513139 PZPP20742 1482 aa22.6■■□□□ 1.21
SPCS3-204ENST00000513139 ZNF644Q9H582 1327 aaPredicted RBP22.58■■□□□ 1.21
SPCS3-204ENST00000513139 SCAF1Q9H7N4 1312 aaKnown RBP22.58■■□□□ 1.21
SPCS3-204ENST00000513139 KDM5DQ9BY66 1539 aa22.58■■□□□ 1.21
SPCS3-204ENST00000513139 PIP4K2BP78356 416 aa22.58■■□□□ 1.21
SPCS3-204ENST00000513139 DEPDC5O75140 1603 aa22.57■■□□□ 1.2
SPCS3-204ENST00000513139 EHBP1L1Q8N3D4 1523 aa22.57■■□□□ 1.2
SPCS3-204ENST00000513139 VWDEQ8N2E2 1590 aa22.56■■□□□ 1.2
SPCS3-204ENST00000513139 ANKLE2Q86XL3 938 aa22.56■■□□□ 1.2
SPCS3-204ENST00000513139 FBXO31Q5XUX0 539 aaPredicted RBP22.55■■□□□ 1.2
SPCS3-204ENST00000513139 MED14O60244 1454 aa22.54■■□□□ 1.2
SPCS3-204ENST00000513139 NLRP1Q9C000 1473 aa22.54■■□□□ 1.2
SPCS3-204ENST00000513139 KIF3BO15066 747 aa22.54■■□□□ 1.2
SPCS3-204ENST00000513139 THEMISQ8N1K5 641 aaPredicted RBP22.54■■□□□ 1.2
SPCS3-204ENST00000513139 PIAS4Q8N2W9 510 aaPredicted RBP22.54■■□□□ 1.2
SPCS3-204ENST00000513139 CEP162Q5TB80 1403 aa22.53■■□□□ 1.2
SPCS3-204ENST00000513139 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.51■■□□□ 1.193e-8■□□□□ 11
SPCS3-204ENST00000513139 UGGT1Q9NYU2 1555 aa22.51■■□□□ 1.19
SPCS3-204ENST00000513139 MIA2Q96PC5 1412 aa22.51■■□□□ 1.19
SPCS3-204ENST00000513139 CCDC141Q6ZP82 1450 aa22.51■■□□□ 1.19
SPCS3-204ENST00000513139 WASHC2CQ9Y4E1 1318 aa22.51■■□□□ 1.19
SPCS3-204ENST00000513139 ALKQ9UM73 1620 aa22.5■■□□□ 1.19
SPCS3-204ENST00000513139 IQGAP1P46940 1657 aa22.5■■□□□ 1.19
SPCS3-204ENST00000513139 RSPH4AQ5TD94 716 aa22.5■■□□□ 1.19
SPCS3-204ENST00000513139 NPHP4O75161 1426 aaPredicted RBP22.48■■□□□ 1.19
SPCS3-204ENST00000513139 STRCP1A6NGW2 1772 aa22.45■■□□□ 1.19
SPCS3-204ENST00000513139 CAMSAP2Q08AD1 1489 aa22.45■■□□□ 1.18
SPCS3-204ENST00000513139 ZC3H13Q5T200 1668 aaKnown RBP22.43■■□□□ 1.18
SPCS3-204ENST00000513139 SYNMO15061 1565 aa22.43■■□□□ 1.18
SPCS3-204ENST00000513139 ARHGEF5Q12774 1597 aa22.43■■□□□ 1.18
SPCS3-204ENST00000513139 RNF17Q9BXT8 1623 aaKnown RBP22.42■■□□□ 1.18
SPCS3-204ENST00000513139 LRRC7Q96NW7 1537 aa22.41■■□□□ 1.18
SPCS3-204ENST00000513139 NCOA2Q15596 1464 aa22.4■■□□□ 1.18
SPCS3-204ENST00000513139 CFAP65Q6ZU64 1925 aaKnown RBP22.37■■□□□ 1.17
SPCS3-204ENST00000513139 TSPY4P0CV99 314 aa22.37■■□□□ 1.17
SPCS3-204ENST00000513139 TSPY10P0CW01 314 aa22.37■■□□□ 1.17
SPCS3-204ENST00000513139 ABCC3O15438 1527 aa22.36■■□□□ 1.17
SPCS3-204ENST00000513139 EIF2AK4Q9P2K8 1649 aaKnown RBP22.36■■□□□ 1.17
SPCS3-204ENST00000513139 UBR1Q8IWV7 1749 aa22.35■■□□□ 1.17
SPCS3-204ENST00000513139 MAST1Q9Y2H9 1570 aa22.33■■□□□ 1.17
SPCS3-204ENST00000513139 ERVK-7P63135 1459 aa22.33■■□□□ 1.16
SPCS3-204ENST00000513139 XIRP1Q702N8 1843 aaKnown RBP22.31■■□□□ 1.16
SPCS3-204ENST00000513139 CEP152O94986 1710 aa22.29■■□□□ 1.16
SPCS3-204ENST00000513139 MROH1Q8NDA8 1641 aa22.29■■□□□ 1.16
SPCS3-204ENST00000513139 SCAF11Q99590 1463 aaKnown RBP22.28■■□□□ 1.16
SPCS3-204ENST00000513139 SLIT1O75093 1534 aa22.26■■□□□ 1.15
SPCS3-204ENST00000513139 ARHGAP23Q9P227 1491 aa22.26■■□□□ 1.15
SPCS3-204ENST00000513139 RGS17Q9UGC6 210 aaPredicted RBP22.22■■□□□ 1.15
SPCS3-204ENST00000513139 DUOX2Q9NRD8 1548 aa22.21■■□□□ 1.15
SPCS3-204ENST00000513139 LTKP29376 864 aa22.2■■□□□ 1.14
SPCS3-204ENST00000513139 TXNDC2Q86VQ3 553 aa22.2■■□□□ 1.14
SPCS3-204ENST00000513139 ARHGAP31Q2M1Z3 1444 aa22.2■■□□□ 1.14
SPCS3-204ENST00000513139 FAM135BQ49AJ0 1406 aa22.19■■□□□ 1.14
SPCS3-204ENST00000513139 LRRC9Q6ZRR7 1453 aa22.19■■□□□ 1.14
SPCS3-204ENST00000513139 KDM5AP29375 1690 aaKnown RBP22.18■■□□□ 1.14
SPCS3-204ENST00000513139 PRDM15P57071 1507 aaPredicted RBP22.17■■□□□ 1.14
SPCS3-204ENST00000513139 EID1Q9Y6B2 187 aa22.17■■□□□ 1.14
SPCS3-204ENST00000513139 PIK3C2BO00750 1634 aa22.15■■□□□ 1.14
SPCS3-204ENST00000513139 MYOM3Q5VTT5 1437 aa22.14■■□□□ 1.13
SPCS3-204ENST00000513139 TMEM2Q9UHN6 1383 aa22.12■■□□□ 1.13
SPCS3-204ENST00000513139 ERBINQ96RT1 1412 aa22.11■■□□□ 1.13
SPCS3-204ENST00000513139 ROBO1Q9Y6N7 1651 aa22.11■■□□□ 1.13
SPCS3-204ENST00000513139 CROCC2H7BZ55 1655 aa22.1■■□□□ 1.13
SPCS3-204ENST00000513139 MAP3K1Q13233 1512 aa22.1■■□□□ 1.13
SPCS3-204ENST00000513139 TMEM94Q12767 1356 aa22.08■■□□□ 1.12
SPCS3-204ENST00000513139 KIF15Q9NS87 1388 aa22.08■■□□□ 1.12
SPCS3-204ENST00000513139 VPS8Q8N3P4 1428 aa22.07■■□□□ 1.12
SPCS3-204ENST00000513139 EFCAB6Q5THR3 1501 aa22.07■■□□□ 1.12
SPCS3-204ENST00000513139 TET3O43151 1660 aa22.07■■□□□ 1.12
SPCS3-204ENST00000513139 KCNA6P17658 529 aa22.06■■□□□ 1.12
SPCS3-204ENST00000513139 POTEAQ6S8J7 498 aa22.06■■□□□ 1.12
SPCS3-204ENST00000513139 STAG3Q9UJ98 1225 aa22.05■■□□□ 1.12
SPCS3-204ENST00000513139 KANK1Q14678 1352 aa22.03■■□□□ 1.12
SPCS3-204ENST00000513139 NKTRP30414 1462 aaKnown RBP22.03■■□□□ 1.12
SPCS3-204ENST00000513139 LMTK2Q8IWU2 1503 aa22.02■■□□□ 1.12
SPCS3-204ENST00000513139 NWD1Q149M9 1564 aa22.02■■□□□ 1.12
SPCS3-204ENST00000513139 KANK4Q5T7N3 995 aaPredicted RBP22.01■■□□□ 1.11
SPCS3-204ENST00000513139 PROSER2Q86WR7 435 aaPredicted RBP22.01■■□□□ 1.11
SPCS3-204ENST00000513139 ABCC5O15440 1437 aa22■■□□□ 1.11
SPCS3-204ENST00000513139 IDI1Q13907 227 aa22■■□□□ 1.11
SPCS3-204ENST00000513139 RRP7BPQ9NSQ0 103 aa22■■□□□ 1.11
SPCS3-204ENST00000513139 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.99■■□□□ 1.112e-9■■■■■ 37
SPCS3-204ENST00000513139 PHLPP1O60346 1717 aa21.99■■□□□ 1.11
SPCS3-204ENST00000513139 PTPN23Q9H3S7 1636 aa21.98■■□□□ 1.11
SPCS3-204ENST00000513139 SLC26A8Q96RN1 970 aa21.97■■□□□ 1.11
SPCS3-204ENST00000513139 CHD2O14647 1828 aaKnown RBP21.96■■□□□ 1.11
SPCS3-204ENST00000513139 ADGRB3O60242 1522 aa21.96■■□□□ 1.11
SPCS3-204ENST00000513139 MSH6P52701 1360 aa21.96■■□□□ 1.11
SPCS3-204ENST00000513139 NOS1P29475 1434 aa21.96■■□□□ 1.11
SPCS3-204ENST00000513139 SETD1AO15047 1707 aaKnown RBP21.95■■□□□ 1.1
SPCS3-204ENST00000513139 DAPK1P53355 1430 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms