RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 ROCK1Q13464 1354 aa13.87□□□□□ -0.19
NUP54-207ENST00000508583 FAM135AQ9P2D6 1515 aa13.87□□□□□ -0.19
NUP54-207ENST00000508583 NCOA1Q15788 1441 aa13.87□□□□□ -0.19
NUP54-207ENST00000508583 PTPRMP28827 1452 aa13.87□□□□□ -0.19
NUP54-207ENST00000508583 RRP7BPQ9NSQ0 103 aa13.85□□□□□ -0.19
NUP54-207ENST00000508583 CHIC2Q9UKJ5 165 aa13.85□□□□□ -0.19
NUP54-207ENST00000508583 KIF3BO15066 747 aa13.84□□□□□ -0.19
NUP54-207ENST00000508583 PLPPR3Q6T4P5 718 aa13.83□□□□□ -0.2
NUP54-207ENST00000508583 CLTCQ00610 1675 aaKnown RBP13.82□□□□□ -0.2
NUP54-207ENST00000508583 ITGAEP38570 1179 aa13.82□□□□□ -0.2
NUP54-207ENST00000508583 GGT6Q6P531 493 aa13.82□□□□□ -0.2
NUP54-207ENST00000508583 RNF17Q9BXT8 1623 aaKnown RBP13.82□□□□□ -0.2
NUP54-207ENST00000508583 C3P01024 1663 aa13.81□□□□□ -0.2
NUP54-207ENST00000508583 ANKRD50Q9ULJ7 1429 aa13.81□□□□□ -0.2
NUP54-207ENST00000508583 MROH2AA6NES4 1674 aa13.8□□□□□ -0.2
NUP54-207ENST00000508583 KDM5DQ9BY66 1539 aa13.8□□□□□ -0.2
NUP54-207ENST00000508583 ZC3H13Q5T200 1668 aaKnown RBP13.79□□□□□ -0.2
NUP54-207ENST00000508583 KANK1Q14678 1352 aa13.79□□□□□ -0.2
NUP54-207ENST00000508583 PTPRKQ15262 1439 aa13.79□□□□□ -0.2
NUP54-207ENST00000508583 WASHC2CQ9Y4E1 1318 aa13.78□□□□□ -0.2
NUP54-207ENST00000508583 PRDM15P57071 1507 aaPredicted RBP13.77□□□□□ -0.21
NUP54-207ENST00000508583 MROH1Q8NDA8 1641 aa13.77□□□□□ -0.21
NUP54-207ENST00000508583 DEPDC5O75140 1603 aa13.76□□□□□ -0.21
NUP54-207ENST00000508583 CEBPAP49715 358 aaPredicted RBP13.75□□□□□ -0.21
NUP54-207ENST00000508583 NPATQ14207 1427 aa13.74□□□□□ -0.21
NUP54-207ENST00000508583 ZMYM3Q14202 1370 aa13.74□□□□□ -0.21
NUP54-207ENST00000508583 ACIN1Q9UKV3 1341 aaKnown RBP13.74□□□□□ -0.21
NUP54-207ENST00000508583 CEP152O94986 1710 aa13.74□□□□□ -0.21
NUP54-207ENST00000508583 HFM1A2PYH4 1435 aa13.73□□□□□ -0.21
NUP54-207ENST00000508583 GCC2Q8IWJ2 1684 aa13.73□□□□□ -0.21
NUP54-207ENST00000508583 SETD1BQ9UPS6 1966 aaKnown RBP13.73□□□□□ -0.21
NUP54-207ENST00000508583 ABCC3O15438 1527 aa13.73□□□□□ -0.21
NUP54-207ENST00000508583 PREX1Q8TCU6 1659 aa13.72□□□□□ -0.21
NUP54-207ENST00000508583 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.71□□□□□ -0.21
NUP54-207ENST00000508583 PZPP20742 1482 aa13.71□□□□□ -0.21
NUP54-207ENST00000508583 NAIPQ13075 1403 aa13.71□□□□□ -0.22
NUP54-207ENST00000508583 CAMSAP1Q5T5Y3 1602 aa13.71□□□□□ -0.22
NUP54-207ENST00000508583 UNC13BO14795 1591 aa13.71□□□□□ -0.22
NUP54-207ENST00000508583 LMTK3Q96Q04 1460 aa13.7□□□□□ -0.22
NUP54-207ENST00000508583 LMTK2Q8IWU2 1503 aa13.69□□□□□ -0.22
NUP54-207ENST00000508583 VWDEQ8N2E2 1590 aa13.69□□□□□ -0.22
NUP54-207ENST00000508583 ARHGAP31Q2M1Z3 1444 aa13.68□□□□□ -0.22
NUP54-207ENST00000508583 UHRF1BP1Q6BDS2 1440 aa13.68□□□□□ -0.22
NUP54-207ENST00000508583 MYO3AQ8NEV4 1616 aa13.68□□□□□ -0.22
NUP54-207ENST00000508583 NUP155O75694 1391 aa13.66□□□□□ -0.22
NUP54-207ENST00000508583 RPRD2Q5VT52 1461 aaKnown RBP13.66□□□□□ -0.22
NUP54-207ENST00000508583 EFCAB6Q5THR3 1501 aa13.65□□□□□ -0.22
NUP54-207ENST00000508583 IQGAP3Q86VI3 1631 aa13.65□□□□□ -0.22
NUP54-207ENST00000508583 TET3O43151 1660 aa13.65□□□□□ -0.22
NUP54-207ENST00000508583 TNRQ92752 1358 aa13.64□□□□□ -0.23
NUP54-207ENST00000508583 SETD5Q9C0A6 1442 aa13.63□□□□□ -0.23
NUP54-207ENST00000508583 ZNF142P52746 1687 aaPredicted RBP13.63□□□□□ -0.23
NUP54-207ENST00000508583 SPATA31D1Q6ZQQ2 1576 aa13.62□□□□□ -0.23
NUP54-207ENST00000508583 ERVK-7P63135 1459 aa13.62□□□□□ -0.23
NUP54-207ENST00000508583 NLRP1Q9C000 1473 aa13.62□□□□□ -0.23
NUP54-207ENST00000508583 HSPA2P54652 639 aa13.61□□□□□ -0.23
NUP54-207ENST00000508583 FBXO31Q5XUX0 539 aaPredicted RBP13.61□□□□□ -0.23
NUP54-207ENST00000508583 CEP170BQ9Y4F5 1589 aaPredicted RBP13.61□□□□□ -0.23
NUP54-207ENST00000508583 TRIM52Q96A61 297 aa13.6□□□□□ -0.23
NUP54-207ENST00000508583 A2ML1A8K2U0 1454 aa13.59□□□□□ -0.23
NUP54-207ENST00000508583 CFAP65Q6ZU64 1925 aaKnown RBP13.58□□□□□ -0.23
NUP54-207ENST00000508583 HRCP23327 699 aa13.57□□□□□ -0.24
NUP54-207ENST00000508583 E9PCH4 1651 aa13.56□□□□□ -0.24
NUP54-207ENST00000508583 TRIM26Q12899 539 aaPredicted RBP13.56□□□□□ -0.24
NUP54-207ENST00000508583 SLC4A1APQ9BWU0 796 aaKnown RBP13.56□□□□□ -0.24
NUP54-207ENST00000508583 SLC52A1Q9NWF4 448 aa13.56□□□□□ -0.24
NUP54-207ENST00000508583 RAB3GAP2Q9H2M9 1393 aa13.56□□□□□ -0.24
NUP54-207ENST00000508583 NOS1P29475 1434 aa13.56□□□□□ -0.24
NUP54-207ENST00000508583 STRCQ7RTU9 1775 aa13.55□□□□□ -0.24
NUP54-207ENST00000508583 SYNMO15061 1565 aa13.54□□□□□ -0.24
NUP54-207ENST00000508583 UGGT1Q9NYU2 1555 aa13.54□□□□□ -0.24
NUP54-207ENST00000508583 THEMISQ8N1K5 641 aaPredicted RBP13.54□□□□□ -0.24
NUP54-207ENST00000508583 STAG3Q9UJ98 1225 aa13.53□□□□□ -0.24
NUP54-207ENST00000508583 PLA2R1Q13018 1463 aa13.53□□□□□ -0.24
NUP54-207ENST00000508583 PIK3C2BO00750 1634 aa13.53□□□□□ -0.24
NUP54-207ENST00000508583 KDM5AP29375 1690 aaKnown RBP13.53□□□□□ -0.24
NUP54-207ENST00000508583 DMRT2Q9Y5R5 561 aa13.52□□□□□ -0.25
NUP54-207ENST00000508583 UBR1Q8IWV7 1749 aa13.52□□□□□ -0.25
NUP54-207ENST00000508583 SPHKAPQ2M3C7 1700 aa13.51□□□□□ -0.25
NUP54-207ENST00000508583 PKD2Q13563 968 aa13.51□□□□□ -0.25
NUP54-207ENST00000508583 POLR1AO95602 1720 aaPredicted RBP13.5□□□□□ -0.25
NUP54-207ENST00000508583 PTPRTO14522 1441 aa13.49□□□□□ -0.25
NUP54-207ENST00000508583 MPHOSPH9Q99550 1183 aa13.49□□□□□ -0.25
NUP54-207ENST00000508583 ADGRB3O60242 1522 aa13.49□□□□□ -0.25
NUP54-207ENST00000508583 TRPM2O94759 1503 aa13.49□□□□□ -0.25
NUP54-207ENST00000508583 IDI1Q13907 227 aa13.48□□□□□ -0.25
NUP54-207ENST00000508583 HDGFP51858 240 aaKnown RBP13.47□□□□□ -0.25
NUP54-207ENST00000508583 CACNB1Q02641 598 aaPredicted RBP13.47□□□□□ -0.25
NUP54-207ENST00000508583 ANKLE2Q86XL3 938 aa13.47□□□□□ -0.25
NUP54-207ENST00000508583 EID1Q9Y6B2 187 aa13.46□□□□□ -0.25
NUP54-207ENST00000508583 NEURL4Q96JN8 1562 aa13.45□□□□□ -0.26
NUP54-207ENST00000508583 MYO5BQ9ULV0 1848 aa13.45□□□□□ -0.26
NUP54-207ENST00000508583 SLIT1O75093 1534 aa13.44□□□□□ -0.26
NUP54-207ENST00000508583 CCDC144AA2RUR9 1427 aa13.44□□□□□ -0.26
NUP54-207ENST00000508583 TMEM2Q9UHN6 1383 aa13.44□□□□□ -0.26
NUP54-207ENST00000508583 NCKAP5LQ9HCH0 1330 aa13.43□□□□□ -0.26
NUP54-207ENST00000508583 ARHGAP23Q9P227 1491 aa13.43□□□□□ -0.26
NUP54-207ENST00000508583 CHGAP10645 457 aaKnown RBP13.43□□□□□ -0.26
NUP54-207ENST00000508583 TMEM131LA2VDJ0 1609 aa13.42□□□□□ -0.26
NUP54-207ENST00000508583 SCAF11Q99590 1463 aaKnown RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms