RNA–Protein interactions for RNA: ENST00000502781.5

LSM6-202, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 1,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-202ENST00000502781 CNTLNQ9NXG0 1405 aa38.17■■■■□ 3.7
LSM6-202ENST00000502781 RNF17Q9BXT8 1623 aaKnown RBP38.17■■■■□ 3.7
LSM6-202ENST00000502781 ANKRD50Q9ULJ7 1429 aa38.14■■■■□ 3.7
LSM6-202ENST00000502781 ESF1Q9H501 851 aaKnown RBP38.12■■■■□ 3.69
LSM6-202ENST00000502781 FAM135AQ9P2D6 1515 aa38.12■■■■□ 3.69
LSM6-202ENST00000502781 MROH1Q8NDA8 1641 aa38.09■■■■□ 3.69
LSM6-202ENST00000502781 KDM5DQ9BY66 1539 aa38.04■■■■□ 3.68
LSM6-202ENST00000502781 MROH2AA6NES4 1674 aa38.04■■■■□ 3.68
LSM6-202ENST00000502781 DEPDC5O75140 1603 aa38.04■■■■□ 3.68
LSM6-202ENST00000502781 PRDM15P57071 1507 aaPredicted RBP38.03■■■■□ 3.68
LSM6-202ENST00000502781 ZMYM3Q14202 1370 aa38.03■■■■□ 3.68
LSM6-202ENST00000502781 CLTCQ00610 1675 aaKnown RBP38.02■■■■□ 3.68
LSM6-202ENST00000502781 CEBPAP49715 358 aaPredicted RBP38.01■■■■□ 3.68
LSM6-202ENST00000502781 WASHC2CQ9Y4E1 1318 aa38■■■■□ 3.67
LSM6-202ENST00000502781 NAIPQ13075 1403 aa37.98■■■■□ 3.67
LSM6-202ENST00000502781 ABCC3O15438 1527 aa37.97■■■■□ 3.67
LSM6-202ENST00000502781 C3P01024 1663 aa37.97■■■■□ 3.67
LSM6-202ENST00000502781 HFM1A2PYH4 1435 aa37.97■■■■□ 3.67
LSM6-202ENST00000502781 VWDEQ8N2E2 1590 aa37.94■■■■□ 3.66
LSM6-202ENST00000502781 ZC3H13Q5T200 1668 aaKnown RBP37.93■■■■□ 3.66
LSM6-202ENST00000502781 PLPPR3Q6T4P5 718 aa37.91■■■■□ 3.66
LSM6-202ENST00000502781 GRWD1Q9BQ67 446 aaKnown RBP eCLIP37.91■■■■□ 3.661e-6■■■■□ 22.6
LSM6-202ENST00000502781 KANK1Q14678 1352 aa37.89■■■■□ 3.66
LSM6-202ENST00000502781 GCC2Q8IWJ2 1684 aa37.88■■■■□ 3.65
LSM6-202ENST00000502781 NPATQ14207 1427 aa37.87■■■■□ 3.65
LSM6-202ENST00000502781 UNC13BO14795 1591 aa37.87■■■■□ 3.65
LSM6-202ENST00000502781 LMTK2Q8IWU2 1503 aa37.86■■■■□ 3.65
LSM6-202ENST00000502781 PZPP20742 1482 aa37.86■■■■□ 3.65
LSM6-202ENST00000502781 CEP152O94986 1710 aa37.83■■■■□ 3.65
LSM6-202ENST00000502781 ARHGAP31Q2M1Z3 1444 aa37.81■■■■□ 3.64
LSM6-202ENST00000502781 SETD1BQ9UPS6 1966 aaKnown RBP37.79■■■■□ 3.64
LSM6-202ENST00000502781 CAMSAP1Q5T5Y3 1602 aa37.79■■■■□ 3.64
LSM6-202ENST00000502781 FBXO31Q5XUX0 539 aaPredicted RBP37.76■■■■□ 3.64
LSM6-202ENST00000502781 NUP155O75694 1391 aa37.74■■■■□ 3.63
LSM6-202ENST00000502781 LMTK3Q96Q04 1460 aa37.74■■■■□ 3.63
LSM6-202ENST00000502781 IQGAP3Q86VI3 1631 aa37.71■■■■□ 3.63
LSM6-202ENST00000502781 EFCAB6Q5THR3 1501 aa37.7■■■■□ 3.63
LSM6-202ENST00000502781 PREX1Q8TCU6 1659 aa37.69■■■■□ 3.62
LSM6-202ENST00000502781 UHRF1BP1Q6BDS2 1440 aa37.68■■■■□ 3.62
LSM6-202ENST00000502781 SPATA31D1Q6ZQQ2 1576 aa37.68■■■■□ 3.62
LSM6-202ENST00000502781 ERVK-7P63135 1459 aa37.67■■■■□ 3.62
LSM6-202ENST00000502781 TET3O43151 1660 aa37.66■■■■□ 3.62
LSM6-202ENST00000502781 TNRQ92752 1358 aa37.66■■■■□ 3.62
LSM6-202ENST00000502781 SETD5Q9C0A6 1442 aa37.66■■■■□ 3.62
LSM6-202ENST00000502781 RPRD2Q5VT52 1461 aaKnown RBP37.62■■■■□ 3.61
LSM6-202ENST00000502781 MYO3AQ8NEV4 1616 aa37.59■■■■□ 3.61
LSM6-202ENST00000502781 NOS1P29475 1434 aa37.57■■■■□ 3.6
LSM6-202ENST00000502781 NLRP1Q9C000 1473 aa37.54■■■■□ 3.6
LSM6-202ENST00000502781 ACIN1Q9UKV3 1341 aaKnown RBP37.54■■■■□ 3.6
LSM6-202ENST00000502781 TRIM52Q96A61 297 aa37.54■■■■□ 3.6
LSM6-202ENST00000502781 RAB3GAP2Q9H2M9 1393 aa37.53■■■■□ 3.6
LSM6-202ENST00000502781 ZNF142P52746 1687 aaPredicted RBP37.52■■■■□ 3.6
LSM6-202ENST00000502781 A2ML1A8K2U0 1454 aa37.52■■■■□ 3.6
LSM6-202ENST00000502781 CEP170BQ9Y4F5 1589 aaPredicted RBP37.51■■■■□ 3.6
LSM6-202ENST00000502781 HSPA2P54652 639 aa37.51■■■■□ 3.59
LSM6-202ENST00000502781 E9PCH4 1651 aa37.51■■■■□ 3.59
LSM6-202ENST00000502781 CFAP65Q6ZU64 1925 aaKnown RBP37.51■■■■□ 3.59
LSM6-202ENST00000502781 HRCP23327 699 aa37.46■■■■□ 3.59
LSM6-202ENST00000502781 SYNMO15061 1565 aa37.46■■■■□ 3.59
LSM6-202ENST00000502781 TRIM26Q12899 539 aaPredicted RBP37.44■■■■□ 3.58
LSM6-202ENST00000502781 SLC4A1APQ9BWU0 796 aaKnown RBP37.42■■■■□ 3.58
LSM6-202ENST00000502781 SLC52A1Q9NWF4 448 aa37.39■■■■□ 3.58
LSM6-202ENST00000502781 PTPRTO14522 1441 aa37.38■■■■□ 3.58
LSM6-202ENST00000502781 PKD2Q13563 968 aa37.38■■■■□ 3.57
LSM6-202ENST00000502781 IDI1Q13907 227 aa37.37■■■■□ 3.57
LSM6-202ENST00000502781 UGGT1Q9NYU2 1555 aa37.37■■■■□ 3.57
LSM6-202ENST00000502781 MPHOSPH9Q99550 1183 aa37.35■■■■□ 3.57
LSM6-202ENST00000502781 PLA2R1Q13018 1463 aa37.34■■■■□ 3.57
LSM6-202ENST00000502781 THEMISQ8N1K5 641 aaPredicted RBP37.31■■■■□ 3.56
LSM6-202ENST00000502781 PIK3C2BO00750 1634 aa37.3■■■■□ 3.56
LSM6-202ENST00000502781 UBR1Q8IWV7 1749 aa37.27■■■■□ 3.56
LSM6-202ENST00000502781 SPHKAPQ2M3C7 1700 aa37.26■■■■□ 3.55
LSM6-202ENST00000502781 KDM5AP29375 1690 aaKnown RBP37.25■■■■□ 3.55
LSM6-202ENST00000502781 STRCQ7RTU9 1775 aa37.24■■■■□ 3.55
LSM6-202ENST00000502781 TRPM2O94759 1503 aa37.24■■■■□ 3.55
LSM6-202ENST00000502781 ADGRB3O60242 1522 aa37.21■■■■□ 3.55
LSM6-202ENST00000502781 FOXD1Q16676 465 aa37.2■■■■□ 3.55
LSM6-202ENST00000502781 ARHGAP23Q9P227 1491 aa37.19■■■■□ 3.54
LSM6-202ENST00000502781 STAG3Q9UJ98 1225 aa37.17■■■■□ 3.54
LSM6-202ENST00000502781 SLIT1O75093 1534 aa37.17■■■■□ 3.54
LSM6-202ENST00000502781 NCKAP5LQ9HCH0 1330 aa37.15■■■■□ 3.54
LSM6-202ENST00000502781 TMEM131LA2VDJ0 1609 aa37.15■■■■□ 3.54
LSM6-202ENST00000502781 TMEM2Q9UHN6 1383 aa37.14■■■■□ 3.54
LSM6-202ENST00000502781 ANKLE2Q86XL3 938 aa37.13■■■■□ 3.53
LSM6-202ENST00000502781 CLTCL1P53675 1640 aa37.12■■■■□ 3.53
LSM6-202ENST00000502781 DMRT2Q9Y5R5 561 aa37.12■■■■□ 3.53
LSM6-202ENST00000502781 NEURL4Q96JN8 1562 aa37.07■■■■□ 3.53
LSM6-202ENST00000502781 MED14O60244 1454 aa37.06■■■■□ 3.52
LSM6-202ENST00000502781 LTKP29376 864 aa37.05■■■■□ 3.52
LSM6-202ENST00000502781 SCAF11Q99590 1463 aaKnown RBP37.04■■■■□ 3.52
LSM6-202ENST00000502781 POLR1AO95602 1720 aaPredicted RBP37.04■■■■□ 3.52
LSM6-202ENST00000502781 ZFYVE9O95405 1425 aa37.04■■■■□ 3.52
LSM6-202ENST00000502781 CHGAP10645 457 aaKnown RBP37.04■■■■□ 3.52
LSM6-202ENST00000502781 CCDC144AA2RUR9 1427 aa37.02■■■■□ 3.52
LSM6-202ENST00000502781 TXNDC2Q86VQ3 553 aa37.02■■■■□ 3.52
LSM6-202ENST00000502781 MYO5BQ9ULV0 1848 aa37.02■■■■□ 3.52
LSM6-202ENST00000502781 ANKRD30BQ9BXX2 1392 aa37.01■■■■□ 3.51
LSM6-202ENST00000502781 EID1Q9Y6B2 187 aa37■■■■□ 3.51
LSM6-202ENST00000502781 NPHP4O75161 1426 aaPredicted RBP36.98■■■■□ 3.51
LSM6-202ENST00000502781 RIMS2Q9UQ26 1411 aa36.98■■■■□ 3.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms