RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 FBXO31Q5XUX0 539 aaPredicted RBP26.98■■□□□ 1.91
VIM-208ENST00000497849 VWDEQ8N2E2 1590 aa26.97■■□□□ 1.91
VIM-208ENST00000497849 MBD5Q9P267 1494 aa26.97■■□□□ 1.91
VIM-208ENST00000497849 TNRQ92752 1358 aa26.97■■□□□ 1.91
VIM-208ENST00000497849 ZNF644Q9H582 1327 aaPredicted RBP26.96■■□□□ 1.91
VIM-208ENST00000497849 CHIC1Q5VXU3 224 aa26.95■■□□□ 1.9
VIM-208ENST00000497849 DHX29Q7Z478 1369 aaKnown RBP26.94■■□□□ 1.9
VIM-208ENST00000497849 RTEL1-TNFRSF6BF6WH68 1400 aa26.93■■□□□ 1.9
VIM-208ENST00000497849 PZPP20742 1482 aa26.93■■□□□ 1.9
VIM-208ENST00000497849 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.91■■□□□ 1.9
VIM-208ENST00000497849 TIAM1Q13009 1591 aa26.91■■□□□ 1.9
VIM-208ENST00000497849 ANKLE2Q86XL3 938 aa26.89■■□□□ 1.9
VIM-208ENST00000497849 KDM5DQ9BY66 1539 aa26.89■■□□□ 1.89
VIM-208ENST00000497849 MTUS2Q5JR59 1369 aa26.88■■□□□ 1.89
VIM-208ENST00000497849 PHF23Q9BUL5 403 aaPredicted RBP26.88■■□□□ 1.89
VIM-208ENST00000497849 MED14O60244 1454 aa26.87■■□□□ 1.89
VIM-208ENST00000497849 KIF3BO15066 747 aa26.87■■□□□ 1.89
VIM-208ENST00000497849 DEPDC5O75140 1603 aa26.87■■□□□ 1.89
VIM-208ENST00000497849 FAM135AQ9P2D6 1515 aa26.86■■□□□ 1.89
VIM-208ENST00000497849 NPHP4O75161 1426 aaPredicted RBP26.86■■□□□ 1.89
VIM-208ENST00000497849 STRCP1A6NGW2 1772 aa26.84■■□□□ 1.89
VIM-208ENST00000497849 MIA2Q96PC5 1412 aa26.84■■□□□ 1.89
VIM-208ENST00000497849 THEMISQ8N1K5 641 aaPredicted RBP26.84■■□□□ 1.89
VIM-208ENST00000497849 UGGT1Q9NYU2 1555 aa26.84■■□□□ 1.89
VIM-208ENST00000497849 NLRP1Q9C000 1473 aa26.83■■□□□ 1.89
VIM-208ENST00000497849 IQGAP1P46940 1657 aa26.81■■□□□ 1.88
VIM-208ENST00000497849 WASHC2CQ9Y4E1 1318 aa26.81■■□□□ 1.88
VIM-208ENST00000497849 LRRC7Q96NW7 1537 aa26.79■■□□□ 1.88
VIM-208ENST00000497849 EHBP1L1Q8N3D4 1523 aa26.78■■□□□ 1.88
VIM-208ENST00000497849 CCDC141Q6ZP82 1450 aa26.77■■□□□ 1.88
VIM-208ENST00000497849 SENP3Q9H4L4 574 aaPredicted RBP26.77■■□□□ 1.88
VIM-208ENST00000497849 RNF17Q9BXT8 1623 aaKnown RBP26.76■■□□□ 1.87
VIM-208ENST00000497849 CEP162Q5TB80 1403 aa26.75■■□□□ 1.87
VIM-208ENST00000497849 SYNMO15061 1565 aa26.73■■□□□ 1.87
VIM-208ENST00000497849 CAMSAP2Q08AD1 1489 aa26.71■■□□□ 1.87
VIM-208ENST00000497849 RGS17Q9UGC6 210 aaPredicted RBP26.71■■□□□ 1.87
VIM-208ENST00000497849 ZC3H13Q5T200 1668 aaKnown RBP26.7■■□□□ 1.86
VIM-208ENST00000497849 RSPH4AQ5TD94 716 aa26.67■■□□□ 1.86
VIM-208ENST00000497849 ABCC3O15438 1527 aa26.65■■□□□ 1.86
VIM-208ENST00000497849 NCOA2Q15596 1464 aa26.63■■□□□ 1.85
VIM-208ENST00000497849 ARHGEF5Q12774 1597 aa26.63■■□□□ 1.85
VIM-208ENST00000497849 ERVK-7P63135 1459 aa26.62■■□□□ 1.85
VIM-208ENST00000497849 XIRP1Q702N8 1843 aaKnown RBP26.62■■□□□ 1.85
VIM-208ENST00000497849 UBR1Q8IWV7 1749 aa26.62■■□□□ 1.85
VIM-208ENST00000497849 CFAP65Q6ZU64 1925 aaKnown RBP26.58■■□□□ 1.85
VIM-208ENST00000497849 TSPY4P0CV99 314 aa26.57■■□□□ 1.84
VIM-208ENST00000497849 TSPY10P0CW01 314 aa26.57■■□□□ 1.84
VIM-208ENST00000497849 MROH1Q8NDA8 1641 aa26.57■■□□□ 1.84
VIM-208ENST00000497849 SCAF11Q99590 1463 aaKnown RBP26.56■■□□□ 1.84
VIM-208ENST00000497849 LTKP29376 864 aa26.54■■□□□ 1.84
VIM-208ENST00000497849 ARHGAP23Q9P227 1491 aa26.54■■□□□ 1.84
VIM-208ENST00000497849 EIF2AK4Q9P2K8 1649 aaKnown RBP26.54■■□□□ 1.84
VIM-208ENST00000497849 CEP152O94986 1710 aa26.53■■□□□ 1.84
VIM-208ENST00000497849 SLIT1O75093 1534 aa26.52■■□□□ 1.84
VIM-208ENST00000497849 MAST1Q9Y2H9 1570 aa26.52■■□□□ 1.84
VIM-208ENST00000497849 POTEAQ6S8J7 498 aa26.5■■□□□ 1.83
VIM-208ENST00000497849 FAM135BQ49AJ0 1406 aa26.49■■□□□ 1.83
VIM-208ENST00000497849 TXNDC2Q86VQ3 553 aa26.49■■□□□ 1.83
VIM-208ENST00000497849 ARHGAP31Q2M1Z3 1444 aa26.4■■□□□ 1.82
VIM-208ENST00000497849 ROBO1Q9Y6N7 1651 aa26.4■■□□□ 1.82
VIM-208ENST00000497849 PIK3C2BO00750 1634 aa26.39■■□□□ 1.82
VIM-208ENST00000497849 TMEM94Q12767 1356 aa26.39■■□□□ 1.82
VIM-208ENST00000497849 EID1Q9Y6B2 187 aa26.38■■□□□ 1.81
VIM-208ENST00000497849 TMEM2Q9UHN6 1383 aa26.37■■□□□ 1.81
VIM-208ENST00000497849 MAP3K1Q13233 1512 aa26.37■■□□□ 1.81
VIM-208ENST00000497849 DUOX2Q9NRD8 1548 aa26.37■■□□□ 1.81
VIM-208ENST00000497849 PRDM15P57071 1507 aaPredicted RBP26.36■■□□□ 1.81
VIM-208ENST00000497849 SETD1AO15047 1707 aaKnown RBP26.36■■□□□ 1.81
VIM-208ENST00000497849 LRRC9Q6ZRR7 1453 aa26.34■■□□□ 1.81
VIM-208ENST00000497849 KCNA6P17658 529 aa26.32■■□□□ 1.8
VIM-208ENST00000497849 TET3O43151 1660 aa26.31■■□□□ 1.8
VIM-208ENST00000497849 RBM33Q96EV2 1170 aaKnown RBP26.31■■□□□ 1.8
VIM-208ENST00000497849 KDM5AP29375 1690 aaKnown RBP26.3■■□□□ 1.8
VIM-208ENST00000497849 EFCAB6Q5THR3 1501 aa26.29■■□□□ 1.8
VIM-208ENST00000497849 PROSER2Q86WR7 435 aaPredicted RBP26.28■■□□□ 1.8
VIM-208ENST00000497849 SLC26A8Q96RN1 970 aa26.27■■□□□ 1.8
VIM-208ENST00000497849 MYOM3Q5VTT5 1437 aa26.27■■□□□ 1.8
VIM-208ENST00000497849 KIF15Q9NS87 1388 aa26.26■■□□□ 1.79
VIM-208ENST00000497849 STAG3Q9UJ98 1225 aa26.26■■□□□ 1.79
VIM-208ENST00000497849 ERBINQ96RT1 1412 aa26.25■■□□□ 1.79
VIM-208ENST00000497849 NWD1Q149M9 1564 aa26.24■■□□□ 1.79
VIM-208ENST00000497849 IDI1Q13907 227 aa26.24■■□□□ 1.79
VIM-208ENST00000497849 PHLPP1O60346 1717 aa26.24■■□□□ 1.79
VIM-208ENST00000497849 NKTRP30414 1462 aaKnown RBP26.23■■□□□ 1.79
VIM-208ENST00000497849 KANK4Q5T7N3 995 aaPredicted RBP26.22■■□□□ 1.79
VIM-208ENST00000497849 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.22■■□□□ 1.79
VIM-208ENST00000497849 CROCC2H7BZ55 1655 aa26.22■■□□□ 1.79
VIM-208ENST00000497849 RRP7BPQ9NSQ0 103 aa26.2■■□□□ 1.78
VIM-208ENST00000497849 JCADQ9P266 1359 aa26.2■■□□□ 1.78
VIM-208ENST00000497849 ABCC5O15440 1437 aa26.18■■□□□ 1.78
VIM-208ENST00000497849 SLAIN2Q9P270 581 aa26.18■■□□□ 1.78
VIM-208ENST00000497849 LMTK2Q8IWU2 1503 aa26.18■■□□□ 1.78
VIM-208ENST00000497849 MSH6P52701 1360 aa26.18■■□□□ 1.78
VIM-208ENST00000497849 VPS8Q8N3P4 1428 aa26.17■■□□□ 1.78
VIM-208ENST00000497849 COL16A1Q07092 1604 aaPredicted RBP26.16■■□□□ 1.78
VIM-208ENST00000497849 ADGRB3O60242 1522 aa26.15■■□□□ 1.78
VIM-208ENST00000497849 KANK1Q14678 1352 aa26.15■■□□□ 1.78
VIM-208ENST00000497849 NOS1P29475 1434 aa26.14■■□□□ 1.78
VIM-208ENST00000497849 LRP6O75581 1613 aa26.14■■□□□ 1.77
VIM-208ENST00000497849 CHD2O14647 1828 aaKnown RBP26.12■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms