RNA–Protein interactions for RNA: ENST00000497018.1

UBR4-217, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 183 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-217ENST00000497018 USTQ9Y2C2 406 aa3.04□□□□□ -1.92
UBR4-217ENST00000497018 CCDC61Q9Y6R9 512 aa3.04□□□□□ -1.92
UBR4-217ENST00000497018 SPATA31D1Q6ZQQ2 1576 aa3.04□□□□□ -1.92
UBR4-217ENST00000497018 UNCXA6NJT0 531 aa3.03□□□□□ -1.92
UBR4-217ENST00000497018 PITPNM1O00562 1244 aa3.03□□□□□ -1.92
UBR4-217ENST00000497018 EIF5BO60841 1220 aaKnown RBP3.03□□□□□ -1.92
UBR4-217ENST00000497018 BRD1O95696 1058 aa3.03□□□□□ -1.92
UBR4-217ENST00000497018 SRPK2P78362 688 aaKnown RBP3.03□□□□□ -1.92
UBR4-217ENST00000497018 TTLL12Q14166 644 aaPredicted RBP3.03□□□□□ -1.92
UBR4-217ENST00000497018 HIC1Q14526 733 aa3.03□□□□□ -1.92
UBR4-217ENST00000497018 SKIV2LQ15477 1246 aaKnown RBP3.03□□□□□ -1.92
UBR4-217ENST00000497018 FARP1Q9Y4F1 1045 aaPredicted RBP3.03□□□□□ -1.92
UBR4-217ENST00000497018 CCDC180Q9P1Z9 1646 aa3.03□□□□□ -1.92
UBR4-217ENST00000497018 BAZ1AQ9NRL2 1556 aaPredicted RBP3.03□□□□□ -1.92
UBR4-217ENST00000497018 OSBPP22059 807 aa3.02□□□□□ -1.93
UBR4-217ENST00000497018 FBXO31Q5XUX0 539 aaPredicted RBP3.02□□□□□ -1.93
UBR4-217ENST00000497018 SND1Q7KZF4 910 aaKnown RBP eCLIP3.02□□□□□ -1.93
UBR4-217ENST00000497018 IFNL1Q8IU54 200 aa3.02□□□□□ -1.93
UBR4-217ENST00000497018 PROCA1Q8NCQ7 364 aaPredicted RBP3.02□□□□□ -1.93
UBR4-217ENST00000497018 CHMP4AQ9BY43 222 aa3.02□□□□□ -1.93
UBR4-217ENST00000497018 GPHNQ9NQX3 736 aaPredicted RBP3.02□□□□□ -1.93
UBR4-217ENST00000497018 SNRKQ9NRH2 765 aa3.02□□□□□ -1.93
UBR4-217ENST00000497018 PRIM1P49642 420 aaKnown RBP3.01□□□□□ -1.93
UBR4-217ENST00000497018 RSPH4AQ5TD94 716 aa3.01□□□□□ -1.93
UBR4-217ENST00000497018 MTMR14Q8NCE2 650 aa3.01□□□□□ -1.93
UBR4-217ENST00000497018 BANK1Q8NDB2 785 aa3.01□□□□□ -1.93
UBR4-217ENST00000497018 PBXIP1Q96AQ6 731 aa3.01□□□□□ -1.93
UBR4-217ENST00000497018 ZNF330Q9Y3S2 320 aaPredicted RBP3.01□□□□□ -1.93
UBR4-217ENST00000497018 NUTM2FA1L443 756 aa3□□□□□ -1.93
UBR4-217ENST00000497018 POM121CA8CG34 1229 aa3□□□□□ -1.93
UBR4-217ENST00000497018 TBC1D12O60347 775 aa3□□□□□ -1.93
UBR4-217ENST00000497018 FCHSD2O94868 740 aa3□□□□□ -1.93
UBR4-217ENST00000497018 PDE4CQ08493 712 aa3□□□□□ -1.93
UBR4-217ENST00000497018 CCDC27Q2M243 656 aa3□□□□□ -1.93
UBR4-217ENST00000497018 FAM177A1Q8N128 213 aaPredicted RBP3□□□□□ -1.93
UBR4-217ENST00000497018 GLMNQ92990 594 aa3□□□□□ -1.93
UBR4-217ENST00000497018 USP35Q9P2H5 1018 aa3□□□□□ -1.93
UBR4-217ENST00000497018 IVNS1ABPQ9Y6Y0 642 aa3□□□□□ -1.93
UBR4-217ENST00000497018 EIF4G1Q04637 1599 aaKnown RBP3□□□□□ -1.93
UBR4-217ENST00000497018 RBM47A0AV96 593 aaKnown RBP2.99□□□□□ -1.93
UBR4-217ENST00000497018 PRKAR2AP13861 404 aaKnown RBP2.99□□□□□ -1.93
UBR4-217ENST00000497018 RFC5P40937 340 aa2.99□□□□□ -1.93
UBR4-217ENST00000497018 PTGDRQ13258 359 aa2.99□□□□□ -1.93
UBR4-217ENST00000497018 DSG2Q14126 1118 aa2.99□□□□□ -1.93
UBR4-217ENST00000497018 CFAP70Q5T0N1 1121 aa2.99□□□□□ -1.93
UBR4-217ENST00000497018 MYSM1Q5VVJ2 828 aa2.99□□□□□ -1.93
UBR4-217ENST00000497018 CCDC125Q86Z20 511 aa2.99□□□□□ -1.93
UBR4-217ENST00000497018 ADAMTS19Q8TE59 1207 aa2.99□□□□□ -1.93
UBR4-217ENST00000497018 PHOX2BQ99453 314 aa2.99□□□□□ -1.93
UBR4-217ENST00000497018 KIAA1522Q9P206 1035 aaPredicted RBP2.99□□□□□ -1.93
UBR4-217ENST00000497018 BICRAQ9NZM4 1560 aa2.99□□□□□ -1.93
UBR4-217ENST00000497018 HECW2Q9P2P5 1572 aa2.99□□□□□ -1.93
UBR4-217ENST00000497018 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP2.98□□□□□ -1.93
UBR4-217ENST00000497018 CARNS1A5YM72 827 aa2.98□□□□□ -1.93
UBR4-217ENST00000497018 TMEM88BA6NKF7 163 aa2.98□□□□□ -1.93
UBR4-217ENST00000497018 GPR37L1O60883 481 aa2.98□□□□□ -1.93
UBR4-217ENST00000497018 CLCN1P35523 988 aa2.98□□□□□ -1.93
UBR4-217ENST00000497018 PTGER2P43116 358 aa2.98□□□□□ -1.93
UBR4-217ENST00000497018 PPP2R2DQ66LE6 453 aa2.98□□□□□ -1.93
UBR4-217ENST00000497018 CHADLQ6NUI6 762 aa2.98□□□□□ -1.93
UBR4-217ENST00000497018 TXNDC2Q86VQ3 553 aa2.98□□□□□ -1.93
UBR4-217ENST00000497018 CALR3Q96L12 384 aaKnown RBP2.98□□□□□ -1.93
UBR4-217ENST00000497018 GDPD2Q9HCC8 539 aa2.98□□□□□ -1.93
UBR4-217ENST00000497018 GPCPD1Q9NPB8 672 aa2.98□□□□□ -1.93
UBR4-217ENST00000497018 GNEQ9Y223 722 aaKnown RBP2.98□□□□□ -1.93
UBR4-217ENST00000497018 GRXCR2A6NFK2 248 aa2.97□□□□□ -1.93
UBR4-217ENST00000497018 MAP3K13O43283 966 aa2.97□□□□□ -1.93
UBR4-217ENST00000497018 SSTR3P32745 418 aaPredicted RBP2.97□□□□□ -1.93
UBR4-217ENST00000497018 CLK2P49760 499 aaKnown RBP2.97□□□□□ -1.93
UBR4-217ENST00000497018 FOXK1P85037 733 aa2.97□□□□□ -1.93
UBR4-217ENST00000497018 MDM2Q00987 491 aaPredicted RBP2.97□□□□□ -1.93
UBR4-217ENST00000497018 DNAJC14Q6Y2X3 702 aaPredicted RBP2.97□□□□□ -1.93
UBR4-217ENST00000497018 KIF12Q96FN5 646 aa2.97□□□□□ -1.93
UBR4-217ENST00000497018 BEGAINQ9BUH8 593 aa2.97□□□□□ -1.93
UBR4-217ENST00000497018 FAM217BQ9NTX9 383 aaPredicted RBP2.97□□□□□ -1.93
UBR4-217ENST00000497018 ARHGEF11O15085 1522 aa2.97□□□□□ -1.93
UBR4-217ENST00000497018 NOM1Q5C9Z4 860 aaKnown RBP2.96□□□□□ -1.94
UBR4-217ENST00000497018 POLR3EQ9NVU0 708 aa2.96□□□□□ -1.94
UBR4-217ENST00000497018 TBC1D2BQ9UPU7 963 aa2.96□□□□□ -1.94
UBR4-217ENST00000497018 THOC2Q8NI27 1593 aaKnown RBP2.95□□□□□ -1.94
UBR4-217ENST00000497018 ACIN1Q9UKV3 1341 aaKnown RBP2.95□□□□□ -1.94
UBR4-217ENST00000497018 KIF3CO14782 793 aa2.95□□□□□ -1.94
UBR4-217ENST00000497018 CSB-PGBD3P0DP91 1061 aa2.95□□□□□ -1.94
UBR4-217ENST00000497018 TMEM259Q4ZIN3 620 aa2.95□□□□□ -1.94
UBR4-217ENST00000497018 NPDC1Q9NQX5 325 aaPredicted RBP2.95□□□□□ -1.94
UBR4-217ENST00000497018 LIMD1Q9UGP4 676 aa2.95□□□□□ -1.94
UBR4-217ENST00000497018 NACADO15069 1562 aa2.95□□□□□ -1.94
UBR4-217ENST00000497018 G3V3G9 751 aa2.94□□□□□ -1.94
UBR4-217ENST00000497018 ATG7O95352 703 aa2.94□□□□□ -1.94
UBR4-217ENST00000497018 TUSC1Q2TAM9 212 aa2.94□□□□□ -1.94
UBR4-217ENST00000497018 CYB5RLQ6IPT4 315 aa2.94□□□□□ -1.94
UBR4-217ENST00000497018 TMC2Q8TDI7 906 aa2.94□□□□□ -1.94
UBR4-217ENST00000497018 C8orf37Q96NL8 207 aa2.94□□□□□ -1.94
UBR4-217ENST00000497018 UCN2Q96RP3 112 aa2.94□□□□□ -1.94
UBR4-217ENST00000497018 TMEM106CQ9BVX2 250 aa2.94□□□□□ -1.94
UBR4-217ENST00000497018 VRTNQ9H8Y1 702 aa2.94□□□□□ -1.94
UBR4-217ENST00000497018 CDHR5Q9HBB8 845 aa2.94□□□□□ -1.94
UBR4-217ENST00000497018 ZRANB1Q9UGI0 708 aa2.94□□□□□ -1.94
UBR4-217ENST00000497018 ZNF16P17020 682 aaPredicted RBP2.93□□□□□ -1.94
UBR4-217ENST00000497018 ABL2P42684 1182 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms