RNA–Protein interactions for RNA: ENST00000496653.4

LIMS1-213, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-213ENST00000496653 RIMS1Q86UR5 1692 aaKnown RBP22.24■■□□□ 1.15
LIMS1-213ENST00000496653 KDM5DQ9BY66 1539 aa22.21■■□□□ 1.15
LIMS1-213ENST00000496653 RNF17Q9BXT8 1623 aaKnown RBP22.2■■□□□ 1.15
LIMS1-213ENST00000496653 ANKRD50Q9ULJ7 1429 aa22.19■■□□□ 1.14
LIMS1-213ENST00000496653 PTPRKQ15262 1439 aa22.18■■□□□ 1.14
LIMS1-213ENST00000496653 MROH2AA6NES4 1674 aa22.17■■□□□ 1.14
LIMS1-213ENST00000496653 ITGAEP38570 1179 aa22.17■■□□□ 1.14
LIMS1-213ENST00000496653 KANK1Q14678 1352 aa22.16■■□□□ 1.14
LIMS1-213ENST00000496653 WASHC2CQ9Y4E1 1318 aa22.16■■□□□ 1.14
LIMS1-213ENST00000496653 PRDM15P57071 1507 aaPredicted RBP22.15■■□□□ 1.14
LIMS1-213ENST00000496653 NPATQ14207 1427 aa22.14■■□□□ 1.14
LIMS1-213ENST00000496653 ZMYM3Q14202 1370 aa22.14■■□□□ 1.14
LIMS1-213ENST00000496653 ZC3H13Q5T200 1668 aaKnown RBP22.13■■□□□ 1.13
LIMS1-213ENST00000496653 DEPDC5O75140 1603 aa22.09■■□□□ 1.13
LIMS1-213ENST00000496653 CLTCQ00610 1675 aaKnown RBP22.09■■□□□ 1.13
LIMS1-213ENST00000496653 ABCC3O15438 1527 aa22.09■■□□□ 1.13
LIMS1-213ENST00000496653 PLPPR3Q6T4P5 718 aa22.08■■□□□ 1.13
LIMS1-213ENST00000496653 MROH1Q8NDA8 1641 aa22.08■■□□□ 1.13
LIMS1-213ENST00000496653 PZPP20742 1482 aa22.08■■□□□ 1.12
LIMS1-213ENST00000496653 C3P01024 1663 aa22.07■■□□□ 1.12
LIMS1-213ENST00000496653 HFM1A2PYH4 1435 aa22.06■■□□□ 1.12
LIMS1-213ENST00000496653 CEBPAP49715 358 aaPredicted RBP22.06■■□□□ 1.12
LIMS1-213ENST00000496653 UHRF1BP1Q6BDS2 1440 aa22.06■■□□□ 1.12
LIMS1-213ENST00000496653 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.04■■□□□ 1.12
LIMS1-213ENST00000496653 LMTK2Q8IWU2 1503 aa22.04■■□□□ 1.12
LIMS1-213ENST00000496653 ARHGAP31Q2M1Z3 1444 aa22.03■■□□□ 1.12
LIMS1-213ENST00000496653 VWDEQ8N2E2 1590 aa22.02■■□□□ 1.12
LIMS1-213ENST00000496653 NAIPQ13075 1403 aa22.01■■□□□ 1.11
LIMS1-213ENST00000496653 ACIN1Q9UKV3 1341 aaKnown RBP22.01■■□□□ 1.11
LIMS1-213ENST00000496653 UNC13BO14795 1591 aa22■■□□□ 1.11
LIMS1-213ENST00000496653 LMTK3Q96Q04 1460 aa22■■□□□ 1.11
LIMS1-213ENST00000496653 PREX1Q8TCU6 1659 aa21.99■■□□□ 1.11
LIMS1-213ENST00000496653 GCC2Q8IWJ2 1684 aa21.98■■□□□ 1.11
LIMS1-213ENST00000496653 TNRQ92752 1358 aa21.98■■□□□ 1.11
LIMS1-213ENST00000496653 CAMSAP1Q5T5Y3 1602 aa21.97■■□□□ 1.11
LIMS1-213ENST00000496653 RPRD2Q5VT52 1461 aaKnown RBP21.96■■□□□ 1.11
LIMS1-213ENST00000496653 SETD1BQ9UPS6 1966 aaKnown RBP21.95■■□□□ 1.1
LIMS1-213ENST00000496653 NLRP1Q9C000 1473 aa21.95■■□□□ 1.1
LIMS1-213ENST00000496653 EFCAB6Q5THR3 1501 aa21.95■■□□□ 1.1
LIMS1-213ENST00000496653 NUP155O75694 1391 aa21.94■■□□□ 1.1
LIMS1-213ENST00000496653 ERVK-7P63135 1459 aa21.94■■□□□ 1.1
LIMS1-213ENST00000496653 CEP152O94986 1710 aa21.93■■□□□ 1.1
LIMS1-213ENST00000496653 SPATA31D1Q6ZQQ2 1576 aa21.93■■□□□ 1.1
LIMS1-213ENST00000496653 IQGAP3Q86VI3 1631 aa21.91■■□□□ 1.1
LIMS1-213ENST00000496653 TET3O43151 1660 aa21.9■■□□□ 1.1
LIMS1-213ENST00000496653 MYO3AQ8NEV4 1616 aa21.9■■□□□ 1.1
LIMS1-213ENST00000496653 FBXO31Q5XUX0 539 aaPredicted RBP21.89■■□□□ 1.09
LIMS1-213ENST00000496653 A2ML1A8K2U0 1454 aa21.89■■□□□ 1.09
LIMS1-213ENST00000496653 CEP170BQ9Y4F5 1589 aaPredicted RBP21.88■■□□□ 1.09
LIMS1-213ENST00000496653 ZNF142P52746 1687 aaPredicted RBP21.87■■□□□ 1.09
LIMS1-213ENST00000496653 SETD5Q9C0A6 1442 aa21.85■■□□□ 1.09
LIMS1-213ENST00000496653 NOS1P29475 1434 aa21.83■■□□□ 1.09
LIMS1-213ENST00000496653 TRIM52Q96A61 297 aa21.83■■□□□ 1.09
LIMS1-213ENST00000496653 PLA2R1Q13018 1463 aa21.83■■□□□ 1.08
LIMS1-213ENST00000496653 HSPA2P54652 639 aa21.82■■□□□ 1.08
LIMS1-213ENST00000496653 SLC52A1Q9NWF4 448 aa21.81■■□□□ 1.08
LIMS1-213ENST00000496653 THEMISQ8N1K5 641 aaPredicted RBP21.8■■□□□ 1.08
LIMS1-213ENST00000496653 UGGT1Q9NYU2 1555 aa21.79■■□□□ 1.08
LIMS1-213ENST00000496653 DMRT2Q9Y5R5 561 aa21.79■■□□□ 1.08
LIMS1-213ENST00000496653 PKD2Q13563 968 aa21.76■■□□□ 1.07
LIMS1-213ENST00000496653 SLC4A1APQ9BWU0 796 aaKnown RBP21.76■■□□□ 1.07
LIMS1-213ENST00000496653 RAB3GAP2Q9H2M9 1393 aa21.75■■□□□ 1.07
LIMS1-213ENST00000496653 HRCP23327 699 aa21.75■■□□□ 1.07
LIMS1-213ENST00000496653 STAG3Q9UJ98 1225 aa21.74■■□□□ 1.07
LIMS1-213ENST00000496653 E9PCH4 1651 aa21.73■■□□□ 1.07
LIMS1-213ENST00000496653 SYNMO15061 1565 aa21.73■■□□□ 1.07
LIMS1-213ENST00000496653 KDM5AP29375 1690 aaKnown RBP21.71■■□□□ 1.07
LIMS1-213ENST00000496653 PTPRTO14522 1441 aa21.71■■□□□ 1.07
LIMS1-213ENST00000496653 ADGRB3O60242 1522 aa21.7■■□□□ 1.06
LIMS1-213ENST00000496653 IDI1Q13907 227 aa21.69■■□□□ 1.06
LIMS1-213ENST00000496653 ANKLE2Q86XL3 938 aa21.69■■□□□ 1.06
LIMS1-213ENST00000496653 TRPM2O94759 1503 aa21.67■■□□□ 1.06
LIMS1-213ENST00000496653 TRIM26Q12899 539 aaPredicted RBP21.67■■□□□ 1.06
LIMS1-213ENST00000496653 MPHOSPH9Q99550 1183 aa21.66■■□□□ 1.06
LIMS1-213ENST00000496653 PIK3C2BO00750 1634 aa21.66■■□□□ 1.06
LIMS1-213ENST00000496653 SLIT1O75093 1534 aa21.65■■□□□ 1.06
LIMS1-213ENST00000496653 EID1Q9Y6B2 187 aa21.65■■□□□ 1.06
LIMS1-213ENST00000496653 UBR1Q8IWV7 1749 aa21.65■■□□□ 1.06
LIMS1-213ENST00000496653 TMEM2Q9UHN6 1383 aa21.64■■□□□ 1.06
LIMS1-213ENST00000496653 ARHGAP23Q9P227 1491 aa21.64■■□□□ 1.05
LIMS1-213ENST00000496653 SPHKAPQ2M3C7 1700 aa21.63■■□□□ 1.05
LIMS1-213ENST00000496653 HDGFP51858 240 aaKnown RBP21.63■■□□□ 1.05
LIMS1-213ENST00000496653 SCAF11Q99590 1463 aaKnown RBP21.63■■□□□ 1.05
LIMS1-213ENST00000496653 CFAP65Q6ZU64 1925 aaKnown RBP21.61■■□□□ 1.05
LIMS1-213ENST00000496653 NCKAP5LQ9HCH0 1330 aa21.6■■□□□ 1.05
LIMS1-213ENST00000496653 MED14O60244 1454 aa21.6■■□□□ 1.05
LIMS1-213ENST00000496653 STRCQ7RTU9 1775 aa21.6■■□□□ 1.05
LIMS1-213ENST00000496653 CCDC144AA2RUR9 1427 aa21.58■■□□□ 1.05
LIMS1-213ENST00000496653 NPHP4O75161 1426 aaPredicted RBP21.58■■□□□ 1.05
LIMS1-213ENST00000496653 CHGAP10645 457 aaKnown RBP21.58■■□□□ 1.05
LIMS1-213ENST00000496653 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.58■■□□□ 1.05
LIMS1-213ENST00000496653 POLR1AO95602 1720 aaPredicted RBP21.58■■□□□ 1.04
LIMS1-213ENST00000496653 TXNDC2Q86VQ3 553 aa21.57■■□□□ 1.04
LIMS1-213ENST00000496653 TMEM131LA2VDJ0 1609 aa21.56■■□□□ 1.04
LIMS1-213ENST00000496653 NEURL4Q96JN8 1562 aa21.55■■□□□ 1.04
LIMS1-213ENST00000496653 PPP1R15AO75807 674 aaPredicted RBP21.53■■□□□ 1.04
LIMS1-213ENST00000496653 ZFYVE9O95405 1425 aa21.53■■□□□ 1.04
LIMS1-213ENST00000496653 RIMS2Q9UQ26 1411 aa21.53■■□□□ 1.04
LIMS1-213ENST00000496653 CLTCL1P53675 1640 aa21.52■■□□□ 1.04
LIMS1-213ENST00000496653 FOXD1Q16676 465 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms