RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 RNF17Q9BXT8 1623 aaKnown RBP23.51■■□□□ 1.35
HPS4-216ENST00000493455 RAB3GAP2Q9H2M9 1393 aa23.51■■□□□ 1.35
HPS4-216ENST00000493455 TRIM52Q96A61 297 aa23.5■■□□□ 1.35
HPS4-216ENST00000493455 CEP152O94986 1710 aa23.48■■□□□ 1.35
HPS4-216ENST00000493455 FER1L4A9Z1Z3 1794 aa23.48■■□□□ 1.35
HPS4-216ENST00000493455 UNC13BO14795 1591 aa23.48■■□□□ 1.35
HPS4-216ENST00000493455 DEPDC5O75140 1603 aa23.48■■□□□ 1.35
HPS4-216ENST00000493455 MROH1Q8NDA8 1641 aa23.48■■□□□ 1.35
HPS4-216ENST00000493455 CLTCQ00610 1675 aaKnown RBP23.45■■□□□ 1.34
HPS4-216ENST00000493455 ESF1Q9H501 851 aaKnown RBP23.45■■□□□ 1.34
HPS4-216ENST00000493455 PRDM15P57071 1507 aaPredicted RBP23.44■■□□□ 1.34
HPS4-216ENST00000493455 KANK1Q14678 1352 aa23.44■■□□□ 1.34
HPS4-216ENST00000493455 MADDQ8WXG6 1647 aa23.44■■□□□ 1.34
HPS4-216ENST00000493455 RIMS1Q86UR5 1692 aaKnown RBP23.43■■□□□ 1.34
HPS4-216ENST00000493455 NUP155O75694 1391 aa23.42■■□□□ 1.34
HPS4-216ENST00000493455 PLPPR3Q6T4P5 718 aa23.42■■□□□ 1.34
HPS4-216ENST00000493455 ADAMTSL3P82987 1691 aa23.41■■□□□ 1.34
HPS4-216ENST00000493455 WASHC2CQ9Y4E1 1318 aa23.4■■□□□ 1.34
HPS4-216ENST00000493455 KDM5DQ9BY66 1539 aa23.39■■□□□ 1.34
HPS4-216ENST00000493455 ZC3H13Q5T200 1668 aaKnown RBP23.38■■□□□ 1.33
HPS4-216ENST00000493455 IQGAP3Q86VI3 1631 aa23.38■■□□□ 1.33
HPS4-216ENST00000493455 ABCC3O15438 1527 aa23.37■■□□□ 1.33
HPS4-216ENST00000493455 FAM135AQ9P2D6 1515 aa23.36■■□□□ 1.33
HPS4-216ENST00000493455 CAMSAP1Q5T5Y3 1602 aa23.36■■□□□ 1.33
HPS4-216ENST00000493455 CFAP65Q6ZU64 1925 aaKnown RBP23.35■■□□□ 1.33
HPS4-216ENST00000493455 VWDEQ8N2E2 1590 aa23.35■■□□□ 1.33
HPS4-216ENST00000493455 TET3O43151 1660 aa23.32■■□□□ 1.32
HPS4-216ENST00000493455 PZPP20742 1482 aa23.31■■□□□ 1.32
HPS4-216ENST00000493455 SLC4A1APQ9BWU0 796 aaKnown RBP23.31■■□□□ 1.32
HPS4-216ENST00000493455 PPP6R1Q9UPN7 881 aa23.31■■□□□ 1.32
HPS4-216ENST00000493455 CNTLNQ9NXG0 1405 aa23.31■■□□□ 1.32
HPS4-216ENST00000493455 MROH2AA6NES4 1674 aa23.3■■□□□ 1.32
HPS4-216ENST00000493455 C3P01024 1663 aa23.28■■□□□ 1.32
HPS4-216ENST00000493455 KDM4FA0A1W2PPD8 638 aa23.28■■□□□ 1.32
HPS4-216ENST00000493455 E9PCH4 1651 aa23.28■■□□□ 1.32
HPS4-216ENST00000493455 EFCAB6Q5THR3 1501 aa23.28■■□□□ 1.32
HPS4-216ENST00000493455 LMTK2Q8IWU2 1503 aa23.28■■□□□ 1.32
HPS4-216ENST00000493455 HRCP23327 699 aa23.27■■□□□ 1.32
HPS4-216ENST00000493455 CEBPAP49715 358 aaPredicted RBP23.27■■□□□ 1.32
HPS4-216ENST00000493455 MPHOSPH9Q99550 1183 aa23.26■■□□□ 1.31
HPS4-216ENST00000493455 ACIN1Q9UKV3 1341 aaKnown RBP23.26■■□□□ 1.31
HPS4-216ENST00000493455 ZMYM3Q14202 1370 aa23.26■■□□□ 1.31
HPS4-216ENST00000493455 PKD2Q13563 968 aa23.24■■□□□ 1.31
HPS4-216ENST00000493455 FOXD1Q16676 465 aa23.24■■□□□ 1.31
HPS4-216ENST00000493455 PTPRMP28827 1452 aa23.23■■□□□ 1.31
HPS4-216ENST00000493455 NPATQ14207 1427 aa23.21■■□□□ 1.31
HPS4-216ENST00000493455 PREX1Q8TCU6 1659 aa23.21■■□□□ 1.31
HPS4-216ENST00000493455 FBXO31Q5XUX0 539 aaPredicted RBP23.2■■□□□ 1.3
HPS4-216ENST00000493455 SPHKAPQ2M3C7 1700 aa23.17■■□□□ 1.3
HPS4-216ENST00000493455 ARHGAP31Q2M1Z3 1444 aa23.16■■□□□ 1.3
HPS4-216ENST00000493455 DHX57Q6P158 1386 aaKnown RBP23.15■■□□□ 1.3
HPS4-216ENST00000493455 ERVK-7P63135 1459 aa23.15■■□□□ 1.3
HPS4-216ENST00000493455 RPRD2Q5VT52 1461 aaKnown RBP23.14■■□□□ 1.29
HPS4-216ENST00000493455 SPATA31D1Q6ZQQ2 1576 aa23.11■■□□□ 1.29
HPS4-216ENST00000493455 SYNMO15061 1565 aa23.1■■□□□ 1.29
HPS4-216ENST00000493455 TNRQ92752 1358 aa23.1■■□□□ 1.29
HPS4-216ENST00000493455 UGGT1Q9NYU2 1555 aa23.1■■□□□ 1.29
HPS4-216ENST00000493455 MYO3AQ8NEV4 1616 aa23.07■■□□□ 1.28
HPS4-216ENST00000493455 NOS1P29475 1434 aa23.07■■□□□ 1.28
HPS4-216ENST00000493455 CCER1Q8TC90 406 aaPredicted RBP23.06■■□□□ 1.28
HPS4-216ENST00000493455 TRPM2O94759 1503 aa23.06■■□□□ 1.28
HPS4-216ENST00000493455 CLTCL1P53675 1640 aa23.05■■□□□ 1.28
HPS4-216ENST00000493455 PLA2R1Q13018 1463 aa23.04■■□□□ 1.28
HPS4-216ENST00000493455 PTPRTO14522 1441 aa23.03■■□□□ 1.28
HPS4-216ENST00000493455 CHGAP10645 457 aaKnown RBP23.03■■□□□ 1.28
HPS4-216ENST00000493455 SETD1BQ9UPS6 1966 aaKnown RBP23.03■■□□□ 1.28
HPS4-216ENST00000493455 PIK3C2BO00750 1634 aa23.02■■□□□ 1.28
HPS4-216ENST00000493455 CCDC144AA2RUR9 1427 aa23.01■■□□□ 1.27
HPS4-216ENST00000493455 KIF1BO60333 1816 aa23.01■■□□□ 1.27
HPS4-216ENST00000493455 ANKRD30BQ9BXX2 1392 aa23.01■■□□□ 1.27
HPS4-216ENST00000493455 STAG3Q9UJ98 1225 aa23■■□□□ 1.27
HPS4-216ENST00000493455 MYO5BQ9ULV0 1848 aa23■■□□□ 1.27
HPS4-216ENST00000493455 IDI1Q13907 227 aa22.98■■□□□ 1.27
HPS4-216ENST00000493455 AEBP2Q6ZN18 517 aaPredicted RBP22.98■■□□□ 1.27
HPS4-216ENST00000493455 UHRF1BP1Q6BDS2 1440 aa22.98■■□□□ 1.27
HPS4-216ENST00000493455 NEUROD1Q13562 356 aa22.97■■□□□ 1.27
HPS4-216ENST00000493455 SIN3AQ96ST3 1273 aa22.97■■□□□ 1.27
HPS4-216ENST00000493455 CEP170BQ9Y4F5 1589 aaPredicted RBP22.97■■□□□ 1.27
HPS4-216ENST00000493455 SLC52A1Q9NWF4 448 aa22.96■■□□□ 1.27
HPS4-216ENST00000493455 NLRP1Q9C000 1473 aa22.96■■□□□ 1.27
HPS4-216ENST00000493455 ZNF142P52746 1687 aaPredicted RBP22.95■■□□□ 1.26
HPS4-216ENST00000493455 UBR1Q8IWV7 1749 aa22.94■■□□□ 1.26
HPS4-216ENST00000493455 ADGRB3O60242 1522 aa22.93■■□□□ 1.26
HPS4-216ENST00000493455 A2ML1A8K2U0 1454 aa22.93■■□□□ 1.26
HPS4-216ENST00000493455 ZNF326Q5BKZ1 582 aaKnown RBP22.91■■□□□ 1.26
HPS4-216ENST00000493455 TMEM131LA2VDJ0 1609 aa22.9■■□□□ 1.26
HPS4-216ENST00000493455 RGL3Q3MIN7 710 aa22.9■■□□□ 1.26
HPS4-216ENST00000493455 LMTK3Q96Q04 1460 aa22.85■■□□□ 1.25
HPS4-216ENST00000493455 KDM5AP29375 1690 aaKnown RBP22.85■■□□□ 1.25
HPS4-216ENST00000493455 HSPA2P54652 639 aa22.85■■□□□ 1.25
HPS4-216ENST00000493455 NUTM2DQ5VT03 806 aaPredicted RBP22.83■■□□□ 1.25
HPS4-216ENST00000493455 SENP3Q9H4L4 574 aaPredicted RBP22.83■■□□□ 1.25
HPS4-216ENST00000493455 THEMISQ8N1K5 641 aaPredicted RBP22.82■■□□□ 1.24
HPS4-216ENST00000493455 SPATA31E1Q6ZUB1 1445 aa22.81■■□□□ 1.24
HPS4-216ENST00000493455 CLSPNQ9HAW4 1339 aa22.81■■□□□ 1.24
HPS4-216ENST00000493455 RIMS2Q9UQ26 1411 aa22.79■■□□□ 1.24
HPS4-216ENST00000493455 PPLO60437 1756 aa22.78■■□□□ 1.24
HPS4-216ENST00000493455 TONSLQ96HA7 1378 aa22.78■■□□□ 1.24
HPS4-216ENST00000493455 PPP1R15AO75807 674 aaPredicted RBP22.77■■□□□ 1.24
HPS4-216ENST00000493455 IFT172Q9UG01 1749 aa22.77■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms