RNA–Protein interactions for RNA: ENST00000493060.5

NVL-222, Transcript of nuclear VCP-like, human

TSL 2

Gene NVL, Length 639 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NVL-222	ENST00000493060	HSPA2	P54652	639 aa		14.09	□□□□□ -0.15
NVL-222	ENST00000493060	CLIP1	P30622	1438 aa		14.08	□□□□□ -0.15
NVL-222	ENST00000493060	ZRANB1	Q9UGI0	708 aa		14.08	□□□□□ -0.16
NVL-222	ENST00000493060	MNX1	P50219	401 aa	Predicted RBP	14.07	□□□□□ -0.16
NVL-222	ENST00000493060	MLEC	Q14165	292 aa		14.07	□□□□□ -0.16
NVL-222	ENST00000493060	CCDC18	Q5T9S5	1454 aa		14.06	□□□□□ -0.16
NVL-222	ENST00000493060	CLCN6	P51797	869 aa		14.06	□□□□□ -0.16
NVL-222	ENST00000493060	EFCAB2	Q5VUJ9	269 aa		14.06	□□□□□ -0.16
NVL-222	ENST00000493060	ATP1B4	Q9UN42	357 aa	Predicted RBP	14.06	□□□□□ -0.16
NVL-222	ENST00000493060	CASKIN1	Q8WXD9	1431 aa		14.06	□□□□□ -0.16
NVL-222	ENST00000493060	SAMD9L	Q8IVG5	1584 aa		14.05	□□□□□ -0.16
NVL-222	ENST00000493060	MLH3	Q9UHC1	1453 aa		14.05	□□□□□ -0.16
NVL-222	ENST00000493060	MROH2A	A6NES4	1674 aa		14.04	□□□□□ -0.16
NVL-222	ENST00000493060	CDK11A	Q9UQ88	783 aa	Predicted RBP	14.04	□□□□□ -0.16
NVL-222	ENST00000493060	AGL	P35573	1532 aa		14.04	□□□□□ -0.16
NVL-222	ENST00000493060	SUPT6H	Q7KZ85	1726 aa	Known RBP	14.04	□□□□□ -0.16
NVL-222	ENST00000493060	FYCO1	Q9BQS8	1478 aa		14.03	□□□□□ -0.16
NVL-222	ENST00000493060	TRAPPC8	Q9Y2L5	1435 aa		14.02	□□□□□ -0.16
NVL-222	ENST00000493060	GALR2	O43603	387 aa	Predicted RBP	14.02	□□□□□ -0.17
NVL-222	ENST00000493060	AFAP1	Q8N556	730 aa		14.01	□□□□□ -0.17
NVL-222	ENST00000493060	INO80	Q9ULG1	1556 aa	Predicted RBP	14	□□□□□ -0.17
NVL-222	ENST00000493060	SYCP2	Q9BX26	1530 aa		14	□□□□□ -0.17
NVL-222	ENST00000493060	CLTC	Q00610	1675 aa	Known RBP	13.99	□□□□□ -0.17
NVL-222	ENST00000493060	CEBPA	P49715	358 aa	Predicted RBP	13.99	□□□□□ -0.17
NVL-222	ENST00000493060	PROM2	Q8N271	834 aa		13.99	□□□□□ -0.17
NVL-222	ENST00000493060	ZNF142	P52746	1687 aa	Predicted RBP	13.98	□□□□□ -0.17
NVL-222	ENST00000493060	PLXNC1	O60486	1568 aa		13.97	□□□□□ -0.17
NVL-222	ENST00000493060	ADGB	Q8N7X0	1667 aa		13.97	□□□□□ -0.17
NVL-222	ENST00000493060	UHRF1BP1	Q6BDS2	1440 aa		13.97	□□□□□ -0.17
NVL-222	ENST00000493060	ATP7A	Q04656	1500 aa		13.95	□□□□□ -0.18
NVL-222	ENST00000493060	PHF12	Q96QT6	1004 aa		13.95	□□□□□ -0.18
NVL-222	ENST00000493060	MYO3A	Q8NEV4	1616 aa		13.94	□□□□□ -0.18
NVL-222	ENST00000493060	CERK	Q8TCT0	537 aa		13.94	□□□□□ -0.18
NVL-222	ENST00000493060	DCBLD2	Q96PD2	775 aa		13.94	□□□□□ -0.18
NVL-222	ENST00000493060	GPATCH8	Q9UKJ3	1502 aa	Known RBP	13.94	□□□□□ -0.18
NVL-222	ENST00000493060	TIAM1	Q13009	1591 aa		13.92	□□□□□ -0.18
NVL-222	ENST00000493060	LTBP4	Q8N2S1	1624 aa		13.91	□□□□□ -0.18
NVL-222	ENST00000493060	MYT1L	Q9UL68	1186 aa		13.91	□□□□□ -0.18
NVL-222	ENST00000493060	CNTLN	Q9NXG0	1405 aa		13.9	□□□□□ -0.18
NVL-222	ENST00000493060	CAMSAP1	Q5T5Y3	1602 aa		13.89	□□□□□ -0.19
NVL-222	ENST00000493060	PTPRT	O14522	1441 aa		13.88	□□□□□ -0.19
NVL-222	ENST00000493060	NCOA1	Q15788	1441 aa		13.88	□□□□□ -0.19
NVL-222	ENST00000493060	POLR1A	O95602	1720 aa	Predicted RBP	13.87	□□□□□ -0.19
NVL-222	ENST00000493060	EHBP1L1	Q8N3D4	1523 aa		13.87	□□□□□ -0.19
NVL-222	ENST00000493060	PLEKHH2	Q8IVE3	1493 aa		13.87	□□□□□ -0.19
NVL-222	ENST00000493060	NPAT	Q14207	1427 aa		13.86	□□□□□ -0.19
NVL-222	ENST00000493060	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.86	□□□□□ -0.19
NVL-222	ENST00000493060	KIAA1107	Q9UPP5	1409 aa		13.85	□□□□□ -0.19
NVL-222	ENST00000493060	A2M	P01023	1474 aa		13.85	□□□□□ -0.19
NVL-222	ENST00000493060	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.84	□□□□□ -0.19
NVL-222	ENST00000493060	SPAG9	O60271	1321 aa	Known RBP	13.83	□□□□□ -0.2
NVL-222	ENST00000493060	CCNB3	Q8WWL7	1395 aa		13.83	□□□□□ -0.2
NVL-222	ENST00000493060	IQSEC2	Q5JU85	1478 aa		13.82	□□□□□ -0.2
NVL-222	ENST00000493060	POTEB2	H3BUK9	544 aa		13.82	□□□□□ -0.2
NVL-222	ENST00000493060	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
NVL-222	ENST00000493060	ESF1	Q9H501	851 aa	Known RBP	13.82	□□□□□ -0.2
NVL-222	ENST00000493060	MBD5	Q9P267	1494 aa		13.81	□□□□□ -0.2
NVL-222	ENST00000493060	SPATA31D1	Q6ZQQ2	1576 aa		13.81	□□□□□ -0.2
NVL-222	ENST00000493060	PAK3	O75914	559 aa	Predicted RBP	13.81	□□□□□ -0.2
NVL-222	ENST00000493060	DNMT1	P26358	1616 aa	Known RBP	13.81	□□□□□ -0.2
NVL-222	ENST00000493060	PTPRK	Q15262	1439 aa		13.81	□□□□□ -0.2
NVL-222	ENST00000493060	PELP1	Q8IZL8	1130 aa	Known RBP	13.8	□□□□□ -0.2
NVL-222	ENST00000493060	ZMYM3	Q14202	1370 aa		13.8	□□□□□ -0.2
NVL-222	ENST00000493060	MTUS2	Q5JR59	1369 aa		13.8	□□□□□ -0.2
NVL-222	ENST00000493060	PLA2R1	Q13018	1463 aa		13.79	□□□□□ -0.2
NVL-222	ENST00000493060	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.78	□□□□□ -0.2
NVL-222	ENST00000493060	CEP162	Q5TB80	1403 aa		13.78	□□□□□ -0.2
NVL-222	ENST00000493060	TCOF1	Q13428	1488 aa	Known RBP	13.78	□□□□□ -0.2
NVL-222	ENST00000493060	NEURL4	Q96JN8	1562 aa		13.77	□□□□□ -0.21
NVL-222	ENST00000493060	CAMSAP2	Q08AD1	1489 aa		13.76	□□□□□ -0.21
NVL-222	ENST00000493060	ZNF644	Q9H582	1327 aa	Predicted RBP	13.76	□□□□□ -0.21
NVL-222	ENST00000493060	MS4A3	Q96HJ5	214 aa		13.76	□□□□□ -0.21
NVL-222	ENST00000493060	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.75	□□□□□ -0.21
NVL-222	ENST00000493060	CFAP65	Q6ZU64	1925 aa	Known RBP	13.75	□□□□□ -0.21
NVL-222	ENST00000493060	ARHGEF5	Q12774	1597 aa		13.75	□□□□□ -0.21
NVL-222	ENST00000493060	FAM135A	Q9P2D6	1515 aa		13.74	□□□□□ -0.21
NVL-222	ENST00000493060	OTUD5	Q96G74	571 aa		13.74	□□□□□ -0.21
NVL-222	ENST00000493060	RNF17	Q9BXT8	1623 aa	Known RBP	13.74	□□□□□ -0.21
NVL-222	ENST00000493060	KDM5D	Q9BY66	1539 aa		13.74	□□□□□ -0.21
NVL-222	ENST00000493060	A2ML1	A8K2U0	1454 aa		13.74	□□□□□ -0.21
NVL-222	ENST00000493060	NCOA2	Q15596	1464 aa		13.74	□□□□□ -0.21
NVL-222	ENST00000493060	CCDC141	Q6ZP82	1450 aa		13.74	□□□□□ -0.21
NVL-222	ENST00000493060	ZC3H13	Q5T200	1668 aa	Known RBP	13.73	□□□□□ -0.21
NVL-222	ENST00000493060	CEP152	O94986	1710 aa		13.73	□□□□□ -0.21
NVL-222	ENST00000493060	NCKAP5L	Q9HCH0	1330 aa		13.72	□□□□□ -0.21
NVL-222	ENST00000493060	DISP3	Q9P2K9	1392 aa		13.71	□□□□□ -0.21
NVL-222	ENST00000493060	GGT6	Q6P531	493 aa		13.71	□□□□□ -0.21
NVL-222	ENST00000493060	MAST1	Q9Y2H9	1570 aa		13.71	□□□□□ -0.22
NVL-222	ENST00000493060	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.7	□□□□□ -0.22
NVL-222	ENST00000493060	PZP	P20742	1482 aa		13.7	□□□□□ -0.22
NVL-222	ENST00000493060	CCDC61	Q9Y6R9	512 aa		13.7	□□□□□ -0.22
NVL-222	ENST00000493060	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.7	□□□□□ -0.22
NVL-222	ENST00000493060	STRCP1	A6NGW2	1772 aa		13.7	□□□□□ -0.22
NVL-222	ENST00000493060	DHX29	Q7Z478	1369 aa	Known RBP	13.7	□□□□□ -0.22
NVL-222	ENST00000493060	CROCC2	H7BZ55	1655 aa		13.69	□□□□□ -0.22
NVL-222	ENST00000493060	ASTL	Q6HA08	431 aa	Predicted RBP	13.69	□□□□□ -0.22
NVL-222	ENST00000493060	ILDR2	Q71H61	639 aa		13.69	□□□□□ -0.22
NVL-222	ENST00000493060	MROH1	Q8NDA8	1641 aa		13.68	□□□□□ -0.22
NVL-222	ENST00000493060	DEPDC5	O75140	1603 aa		13.68	□□□□□ -0.22
NVL-222	ENST00000493060	IQGAP1	P46940	1657 aa		13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms